Wall clock time and date at job start Mon Mar 30 2020 06:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99824 * 2 1 4 4 H 1.48497 * 109.46771 * 239.99634 * 3 2 1 5 5 H 1.48496 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46927 * 120.00044 * 3 2 1 7 7 C 1.37871 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00664 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99657 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47385 * 299.99739 * 9 7 2 11 11 N 1.46895 * 109.47677 * 59.99837 * 9 7 2 12 12 C 1.50706 * 109.47219 * 180.02562 * 9 7 2 13 13 C 1.38260 * 119.99718 * 265.00317 * 12 9 7 14 14 C 1.38215 * 119.99680 * 179.97438 * 13 12 9 15 15 C 1.38256 * 120.00141 * 359.94722 * 14 13 12 16 16 C 1.38211 * 120.00062 * 0.28711 * 15 14 13 17 17 C 1.38211 * 120.00259 * 84.97402 * 12 9 7 18 18 C 1.50707 * 119.99838 * 0.02562 * 17 12 9 19 19 H 1.09001 * 110.43375 * 0.70719 * 18 17 12 20 20 C 1.54809 * 110.49009 * 238.15475 * 18 17 12 21 21 C 1.55217 * 101.98614 * 220.52103 * 20 18 17 22 22 O 1.44380 * 103.56776 * 36.88286 * 21 20 18 23 23 C 1.43740 * 106.97585 * 320.00818 * 22 21 20 24 24 H 0.97000 * 119.99833 * 0.02562 * 1 2 3 25 25 H 1.00903 * 110.99914 * 296.05188 * 11 9 7 26 26 H 1.00905 * 110.99827 * 59.99580 * 11 9 7 27 27 H 1.07996 * 119.99860 * 359.96763 * 13 12 9 28 28 H 1.07999 * 119.99782 * 179.97438 * 14 13 12 29 29 H 1.08002 * 119.99676 * 180.02562 * 15 14 13 30 30 H 1.07998 * 120.00348 * 179.72205 * 16 15 14 31 31 H 1.09001 * 110.90591 * 338.64131 * 20 18 17 32 32 H 1.08997 * 110.90529 * 102.24726 * 20 18 17 33 33 H 1.09004 * 110.52005 * 278.38315 * 21 20 18 34 34 H 1.09002 * 110.78028 * 155.50348 * 21 20 18 35 35 H 1.08998 * 109.88137 * 267.09098 * 23 22 21 36 36 H 1.09003 * 110.00601 * 146.00716 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5566 0.8903 11 7 0.4069 -2.5772 -1.1991 12 6 2.2303 -3.6446 0.0018 13 6 2.6011 -4.2383 -1.1905 14 6 3.4996 -5.2885 -1.1894 15 6 4.0284 -5.7446 0.0039 16 6 3.6540 -5.1543 1.1962 17 6 2.7581 -4.1012 1.1947 18 6 2.3540 -3.4540 2.4943 19 1 1.6338 -2.6558 2.3142 20 6 3.5971 -2.9051 3.2360 21 6 3.2844 -3.2791 4.7096 22 8 2.6359 -4.5646 4.6026 23 6 1.7669 -4.5024 3.4593 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3004 -1.8577 -1.1910 26 1 0.9652 -2.5260 -2.0381 27 1 2.1886 -3.8815 -2.1226 28 1 3.7890 -5.7526 -2.1207 29 1 4.7308 -6.5650 0.0046 30 1 4.0636 -5.5135 2.1287 31 1 4.5050 -3.4014 2.8933 32 1 3.6765 -1.8248 3.1152 33 1 2.6122 -2.5460 5.1555 34 1 4.2027 -3.3598 5.2913 35 1 0.7666 -4.2010 3.7700 36 1 1.7253 -5.4751 2.9691 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260257362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:11 Heat of formation + Delta-G solvation = -46.084437 kcal Electronic energy + Delta-G solvation = -18360.805285 eV Core-core repulsion = 15615.408384 eV Total energy + Delta-G solvation = -2745.396902 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12381 -39.38493 -36.53106 -34.24266 -33.53902 -31.04664 -30.71606 -29.23112 -27.92674 -24.78305 -24.15646 -23.23444 -21.50700 -20.85813 -18.56135 -17.99332 -17.29622 -16.93876 -16.49368 -16.05040 -15.88025 -15.38716 -15.15393 -14.80725 -14.31424 -13.87668 -13.76154 -13.59036 -13.15019 -13.00113 -12.83453 -12.69951 -12.45346 -12.29975 -12.24178 -11.98240 -11.76854 -11.51060 -11.06779 -10.72222 -10.64979 -9.48091 -9.37723 -9.10974 -8.10870 -6.36187 0.62585 0.73853 1.35758 1.37698 1.44809 2.35286 2.98207 3.05794 3.07852 3.72425 3.86883 4.03389 4.20923 4.26334 4.31914 4.33462 4.36860 4.44985 4.68477 4.76135 4.78419 4.85963 4.93787 4.98034 5.10374 5.20180 5.27706 5.33808 5.50633 5.62902 5.74741 5.80221 5.90128 6.03022 6.17477 6.34498 6.65354 6.94445 7.10613 7.39296 8.82417 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.009506 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.027397 B = 2944.682244 C = 3863.659935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.042 0.958 9 C 0.246 3.754 10 H 0.018 0.982 11 N -0.846 5.846 12 C -0.057 4.057 13 C -0.128 4.128 14 C -0.127 4.127 15 C -0.137 4.137 16 C -0.119 4.119 17 C -0.089 4.089 18 C -0.084 4.084 19 H 0.075 0.925 20 C -0.138 4.138 21 C 0.048 3.952 22 O -0.390 6.390 23 C 0.061 3.939 24 H 0.267 0.733 25 H 0.344 0.656 26 H 0.317 0.683 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.056 0.944 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.294 -7.410 3.829 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.174 4.174 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.060 0.940 9 C 0.136 3.864 10 H 0.036 0.964 11 N -0.375 5.375 12 C -0.058 4.058 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.155 4.155 16 C -0.137 4.137 17 C -0.090 4.090 18 C -0.103 4.103 19 H 0.093 0.907 20 C -0.176 4.176 21 C -0.028 4.028 22 O -0.310 6.310 23 C -0.015 4.015 24 H 0.076 0.924 25 H 0.159 0.841 26 H 0.127 0.873 27 H 0.133 0.867 28 H 0.159 0.841 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.075 0.925 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.932 -8.198 4.252 11.547 hybrid contribution 0.292 2.482 -0.559 2.561 sum 7.223 -5.716 3.693 9.924 Atomic orbital electron populations 1.69827 1.06794 1.27887 1.50929 1.25648 0.95621 1.01926 0.94254 0.85731 0.78500 0.79430 0.78710 1.20097 1.20857 1.19772 1.21855 0.92943 0.92080 1.51624 0.93952 1.17793 0.89047 0.89189 0.90344 0.96396 1.59546 1.18297 1.55282 1.04346 1.20243 0.96668 0.95563 0.93325 1.21064 0.98654 0.97309 0.97648 1.21362 0.97122 0.96761 0.99205 1.21295 1.01207 1.01100 0.91901 1.21069 0.97684 0.95940 0.98973 1.19567 0.98723 0.97169 0.93530 1.21459 0.98393 0.97601 0.92804 0.90672 1.23187 0.97503 1.01669 0.95215 1.23731 0.98219 0.84846 0.95969 1.88781 1.60204 1.34234 1.47753 1.23208 0.93223 0.99494 0.85604 0.92399 0.84113 0.87270 0.86674 0.84122 0.83567 0.85079 0.89981 0.90877 0.91928 0.86475 0.92537 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.83 11.54 21.44 0.25 -49.58 16 2 C 0.03 1.36 5.38 84.65 0.46 1.81 16 3 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -28.78 8.54 25.60 0.22 -28.56 16 8 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 9 C 0.25 12.20 2.26 43.43 0.10 12.30 16 10 H 0.02 1.01 6.38 -2.39 -0.02 0.99 16 11 N -0.85 -40.61 8.79 -174.95 -1.54 -42.15 16 12 C -0.06 -2.48 4.99 -19.86 -0.10 -2.58 16 13 C -0.13 -4.95 9.27 22.27 0.21 -4.74 16 14 C -0.13 -3.95 10.05 22.27 0.22 -3.72 16 15 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 16 C -0.12 -3.79 8.10 22.27 0.18 -3.61 16 17 C -0.09 -3.41 4.75 -19.86 -0.09 -3.50 16 18 C -0.08 -3.07 3.03 -10.55 -0.03 -3.11 16 19 H 0.07 3.31 5.52 -2.39 -0.01 3.30 16 20 C -0.14 -4.32 6.62 31.97 0.21 -4.11 16 21 C 0.05 1.29 7.72 72.74 0.56 1.85 16 22 O -0.39 -12.03 11.52 -148.98 -1.72 -13.74 16 23 C 0.06 1.99 7.08 72.36 0.51 2.50 16 24 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.34 17.75 7.08 -89.69 -0.63 17.11 16 26 H 0.32 14.42 7.21 -89.69 -0.65 13.77 16 27 H 0.12 4.40 6.29 -2.91 -0.02 4.38 16 28 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 29 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.13 3.68 7.85 -2.91 -0.02 3.65 16 31 H 0.08 2.42 7.08 -2.39 -0.02 2.40 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 2.74 7.29 -2.39 -0.02 2.72 16 Total: -1.00 -57.66 289.98 1.50 -56.15 By element: Atomic # 1 Polarization: 44.44 SS G_CDS: -0.18 Total: 44.25 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 2.67 Total: -39.19 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -1.29 Total: -91.73 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -1.72 Total: -13.74 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -57.66 1.50 -56.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260257362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.070 kcal (2) G-P(sol) polarization free energy of solvation -57.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds