Wall clock time and date at job start Mon Mar 30 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35708 * 117.00291 * 2 1 4 4 C 1.38425 * 120.11360 * 0.02562 * 3 2 1 5 5 C 1.38698 * 120.03880 * 179.97438 * 4 3 2 6 6 O 1.35751 * 119.86321 * 179.97438 * 5 4 3 7 7 C 1.39132 * 120.27489 * 0.02562 * 5 4 3 8 8 C 1.50699 * 119.87939 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47459 * 84.99368 * 8 7 5 10 10 C 1.50699 * 109.47459 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99552 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00244 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99687 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99992 * 359.97438 * 12 10 9 15 15 H 1.48491 * 109.47238 * 90.00414 * 14 12 10 16 16 H 1.48502 * 109.47155 * 210.00741 * 14 12 10 17 17 H 1.48499 * 109.46847 * 330.00150 * 14 12 10 18 18 C 1.37609 * 120.23649 * 359.97438 * 7 5 4 19 19 C 1.39843 * 119.95913 * 0.02562 * 18 7 5 20 20 C 1.43201 * 120.13526 * 180.02562 * 19 18 7 21 21 N 3.53201 * 165.87493 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47004 * 59.99674 * 1 2 3 23 23 H 1.09004 * 109.46846 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46727 * 299.99315 * 1 2 3 25 25 H 1.07998 * 119.98139 * 359.70371 * 4 3 2 26 26 H 0.96701 * 114.00171 * 90.00074 * 6 5 4 27 27 H 1.09003 * 109.46994 * 204.99618 * 8 7 5 28 28 H 1.09004 * 109.47139 * 324.98885 * 8 7 5 29 29 H 1.09003 * 109.47222 * 300.00111 * 9 8 7 30 30 H 1.09004 * 109.47339 * 59.99640 * 9 8 7 31 31 H 0.97002 * 119.99588 * 180.02562 * 13 12 10 32 32 H 1.08007 * 120.02122 * 180.02562 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2936 2.3716 0.0005 5 6 1.9250 3.6065 0.0011 6 8 1.1844 4.7443 0.0011 7 6 3.3141 3.6841 0.0005 8 6 3.9908 5.0307 0.0005 9 6 4.1080 5.5426 1.4375 10 6 4.7852 6.8889 1.4376 11 1 5.1009 7.3345 0.5058 12 6 5.0027 7.5511 2.6271 13 7 5.5933 8.7262 2.6270 14 14 4.4573 6.7800 4.2388 15 1 5.5585 5.9485 4.7873 16 1 4.1150 7.8508 5.2090 17 1 3.2646 5.9278 4.0010 18 6 4.0723 2.5358 0.0000 19 6 3.4460 1.2854 -0.0005 20 6 4.2313 0.0880 -0.0005 21 7 4.8542 -0.8620 0.0004 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.2150 2.3169 -0.0039 26 1 0.9695 5.0737 0.8845 27 1 4.9860 4.9371 -0.4341 28 1 3.4016 5.7334 -0.5887 29 1 3.1127 5.6362 1.8722 30 1 4.6971 4.8399 2.0268 31 1 5.7467 9.1920 3.4640 32 1 5.1504 2.6001 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260263442.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:02 Heat of formation + Delta-G solvation = -58.913843 kcal Electronic energy + Delta-G solvation = -17015.462757 eV Core-core repulsion = 14133.676436 eV Total energy + Delta-G solvation = -2881.786321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.59839 -39.61680 -38.00946 -36.88843 -35.65349 -33.80776 -31.56329 -30.76072 -28.43422 -26.52828 -24.65534 -23.31553 -22.10085 -19.86050 -19.66609 -18.79740 -18.02625 -17.29027 -16.80725 -16.32255 -15.74386 -15.54774 -15.22466 -14.88261 -14.74973 -14.58991 -14.43342 -14.11357 -13.61807 -13.33485 -13.13610 -12.93674 -12.81102 -12.37276 -12.25017 -11.81965 -11.70472 -11.51489 -11.43348 -11.17975 -10.70908 -9.91177 -9.12696 -8.23444 -6.27300 -0.33484 0.28727 1.41425 1.41983 1.53155 1.62411 1.81174 2.15570 2.40778 2.69959 2.84763 3.12730 3.24706 3.78538 3.94290 4.08495 4.31981 4.40073 4.44418 4.59423 4.73537 4.78632 4.80993 4.90093 5.03693 5.15220 5.33187 5.42696 5.60199 5.72196 5.72684 6.17613 6.34841 6.47377 6.81683 6.81880 7.37246 8.93502 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026060 B = 0.005704 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.193639 B = 4907.896058 C = 5270.156169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.189 3.811 4 C -0.228 4.228 5 C 0.188 3.812 6 O -0.499 6.499 7 C -0.146 4.146 8 C -0.054 4.054 9 C -0.001 4.001 10 C -0.528 4.528 11 H 0.032 0.968 12 C 0.004 3.996 13 N -0.955 5.955 14 Si 0.947 3.053 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.235 1.235 18 C -0.012 4.012 19 C -0.090 4.090 20 C 0.289 3.711 21 N -0.466 5.466 22 H 0.074 0.926 23 H 0.119 0.881 24 H 0.075 0.925 25 H 0.173 0.827 26 H 0.415 0.585 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.017 0.983 31 H 0.264 0.736 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.464 -15.255 -3.327 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.140 3.860 4 C -0.247 4.247 5 C 0.141 3.859 6 O -0.314 6.314 7 C -0.146 4.146 8 C -0.091 4.091 9 C -0.038 4.038 10 C -0.566 4.566 11 H 0.050 0.950 12 C -0.193 4.193 13 N -0.596 5.596 14 Si 0.771 3.229 15 H -0.199 1.199 16 H -0.215 1.215 17 H -0.158 1.158 18 C -0.033 4.033 19 C -0.095 4.095 20 C -0.025 4.025 21 N -0.143 5.143 22 H 0.093 0.907 23 H 0.138 0.862 24 H 0.094 0.906 25 H 0.190 0.810 26 H 0.277 0.723 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.369 -16.844 -3.818 21.841 hybrid contribution -0.130 0.926 1.144 1.478 sum -13.499 -15.918 -2.674 21.042 Atomic orbital electron populations 1.23521 0.75236 1.06063 1.03274 1.86079 1.24540 1.25961 1.87465 1.18629 0.89708 0.85148 0.92559 1.21475 1.02159 0.89744 1.11275 1.18339 0.88432 0.86046 0.93041 1.84634 1.71718 1.39470 1.35556 1.20263 0.93556 0.95926 1.04901 1.20243 0.99375 0.91480 0.98035 1.19464 0.96458 0.93813 0.94106 1.21513 1.37985 1.03716 0.93413 0.94987 1.26003 0.94802 0.95066 1.03402 1.70081 1.45044 1.16244 1.28202 0.85708 0.80384 0.78436 0.78413 1.19908 1.21454 1.15796 1.20885 1.00904 0.88340 0.93155 1.15322 0.88689 0.87684 1.17786 1.25497 0.92398 0.92418 0.92181 1.81185 1.10175 1.11454 1.11525 0.90743 0.86248 0.90634 0.80977 0.72321 0.91873 0.91599 0.95403 0.96441 0.92678 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.51 9.93 -90.28 -0.90 -7.41 16 3 C 0.19 4.10 6.69 22.81 0.15 4.25 16 4 C -0.23 -4.36 8.96 22.42 0.20 -4.15 16 5 C 0.19 4.51 6.68 22.59 0.15 4.66 16 6 O -0.50 -11.65 12.60 -90.76 -1.14 -12.80 16 7 C -0.15 -4.10 5.14 -19.80 -0.10 -4.20 16 8 C -0.05 -1.90 4.99 29.85 0.15 -1.75 16 9 C 0.00 -0.05 4.02 29.85 0.12 0.08 16 10 C -0.53 -28.98 9.66 25.60 0.25 -28.73 16 11 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 12 C 0.00 0.20 5.47 84.65 0.46 0.67 16 13 N -0.95 -58.81 13.96 21.45 0.30 -58.52 16 14 Si 0.95 42.10 27.47 68.60 1.88 43.98 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 18 C -0.01 -0.32 9.37 22.51 0.21 -0.11 16 19 C -0.09 -2.27 5.76 -21.15 -0.12 -2.39 16 20 C 0.29 8.24 14.87 88.33 1.31 9.55 16 21 N -0.47 -15.03 18.54 19.00 0.35 -14.68 16 22 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 23 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.08 0.56 7.66 -2.39 -0.02 0.54 16 25 H 0.17 2.19 6.29 -2.91 -0.02 2.17 16 26 H 0.42 6.90 9.06 -74.06 -0.67 6.23 16 27 H 0.06 2.24 8.05 -2.39 -0.02 2.22 16 28 H 0.07 2.42 7.68 -2.38 -0.02 2.41 16 29 H 0.03 1.09 7.20 -2.39 -0.02 1.08 16 30 H 0.02 0.72 7.57 -2.38 -0.02 0.70 16 31 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 32 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -70.32 288.33 4.82 -65.50 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 0.43 Total: 4.80 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 3.90 Total: -20.89 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: 0.65 Total: -73.19 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -2.04 Total: -20.21 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.98 kcal Total: -70.32 4.82 -65.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260263442.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.587 kcal (2) G-P(sol) polarization free energy of solvation -70.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds