Wall clock time and date at job start Mon Mar 30 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36004 * 117.00114 * 2 1 4 4 C 1.38525 * 119.99836 * 0.02562 * 3 2 1 5 5 C 1.38470 * 120.33282 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.82717 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47327 * 90.00121 * 6 5 4 8 8 C 1.50697 * 109.46995 * 179.97438 * 7 6 5 9 9 H 1.07991 * 120.00449 * 359.72153 * 8 7 6 10 10 C 1.37885 * 119.99686 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.72095 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.72528 * 10 8 7 13 13 H 1.48498 * 109.47416 * 59.99812 * 12 10 8 14 14 H 1.48508 * 109.46609 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46903 * 299.99397 * 12 10 8 16 16 C 1.37821 * 120.34159 * 0.26933 * 5 4 3 17 17 C 1.39773 * 119.99108 * 359.45859 * 16 5 4 18 18 C 1.43202 * 120.16822 * 180.24583 * 17 16 5 19 19 N 5.85403 * 152.61251 * 0.02562 * 2 1 3 20 20 C 1.39064 * 119.99881 * 179.97438 * 3 2 1 21 21 O 1.35799 * 120.17050 * 0.02562 * 20 3 2 22 22 H 1.09000 * 109.46500 * 299.99405 * 1 2 3 23 23 H 1.08996 * 109.47178 * 59.99325 * 1 2 3 24 24 H 1.08998 * 109.46650 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.83262 * 359.97438 * 4 3 2 26 26 H 1.08998 * 109.47519 * 329.99822 * 6 5 4 27 27 H 1.09006 * 109.47270 * 210.00053 * 6 5 4 28 28 H 1.08998 * 109.47065 * 59.99424 * 7 6 5 29 29 H 1.09001 * 109.46892 * 299.99688 * 7 6 5 30 30 H 0.97000 * 119.99651 * 180.02562 * 11 10 8 31 31 H 1.08001 * 120.00602 * 179.72100 * 16 5 4 32 32 H 0.96701 * 114.00182 * 89.99763 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2920 2.3735 0.0005 5 6 1.9135 3.6110 0.0011 6 6 1.0816 4.8676 0.0011 7 6 0.7995 5.2925 1.4436 8 6 -0.0319 6.5494 1.4435 9 1 -0.3255 7.0026 0.5083 10 6 -0.4132 7.1238 2.6376 11 7 -0.0561 6.5716 3.7765 12 14 -1.4373 8.6860 2.6375 13 1 -2.7207 8.4367 1.9333 14 1 -1.7121 9.0977 4.0377 15 1 -0.6924 9.7660 1.9417 16 6 3.2889 3.6993 -0.0045 17 6 4.0637 2.5360 0.0007 18 6 5.4931 2.6234 0.0002 19 7 6.6269 2.6929 0.0012 20 6 3.4352 1.2845 0.0005 21 8 4.1782 0.1478 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 0.2137 2.3139 0.0005 26 1 0.1391 4.6794 -0.5132 27 1 1.6233 5.6620 -0.5124 28 1 1.7420 5.4806 1.9578 29 1 0.2577 4.4982 1.9570 30 1 -0.3247 6.9755 4.6166 31 1 3.7679 4.6673 -0.0086 32 1 4.3937 -0.1813 -0.8829 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260265747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:31 Heat of formation + Delta-G solvation = -39.830708 kcal Electronic energy + Delta-G solvation = -16868.981456 eV Core-core repulsion = 13988.022642 eV Total energy + Delta-G solvation = -2880.958814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52816 -38.13804 -37.05746 -36.26373 -33.75839 -31.89531 -30.51213 -28.85442 -27.32284 -24.99456 -23.64145 -22.23253 -20.77911 -18.92965 -17.82638 -16.80631 -16.60019 -16.33378 -16.00447 -15.25880 -14.54364 -14.32675 -13.95701 -13.48186 -13.35436 -13.03196 -12.79050 -12.58064 -12.23424 -12.05831 -11.99311 -11.49806 -11.28329 -10.95837 -10.79640 -10.70473 -10.59119 -9.97723 -9.66710 -9.21875 -8.62515 -8.41837 -8.03524 -6.06737 -4.10729 0.72660 1.35921 2.65236 3.00328 3.17031 3.28949 3.34415 3.35925 3.77827 3.99551 4.10070 4.40128 4.88063 5.06252 5.13331 5.19628 5.25743 5.29180 5.45413 5.47219 5.65442 6.04746 6.15537 6.18995 6.44615 6.55792 6.73477 6.89483 7.13721 7.51832 7.57468 7.63510 7.68361 7.91281 8.30524 8.95866 9.54043 11.04089 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.005354 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.806262 B = 5228.608829 C = 6070.561036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.104 3.896 4 C -0.164 4.164 5 C -0.024 4.024 6 C -0.082 4.082 7 C 0.029 3.971 8 C -0.526 4.526 9 H 0.056 0.944 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.091 4.091 17 C -0.021 4.021 18 C 0.270 3.730 19 N -0.421 5.421 20 C 0.101 3.899 21 O -0.481 6.481 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.099 0.901 25 H 0.140 0.860 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.020 0.980 29 H 0.019 0.981 30 H 0.262 0.738 31 H 0.139 0.861 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -11.396 -9.892 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.058 3.942 4 C -0.183 4.183 5 C -0.024 4.024 6 C -0.119 4.119 7 C -0.008 4.008 8 C -0.564 4.564 9 H 0.075 0.925 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.112 4.112 17 C -0.025 4.025 18 C -0.045 4.045 19 N -0.097 5.097 20 C 0.053 3.947 21 O -0.290 6.290 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.118 0.882 25 H 0.158 0.842 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.862 -11.420 -9.078 14.867 hybrid contribution -1.257 0.886 -0.262 1.560 sum 1.605 -10.534 -9.340 14.170 Atomic orbital electron populations 1.23134 0.78114 1.03941 1.01977 1.86109 1.21472 1.25852 1.88779 1.19081 0.90915 0.85194 0.98996 1.21366 1.00820 0.91053 1.05098 1.20131 0.93296 0.95949 0.93064 1.20936 0.97336 0.91361 1.02296 1.19103 0.97181 0.96269 0.88295 1.21172 1.33214 1.09655 0.92381 0.92530 1.25019 0.96177 0.97460 0.95640 1.69954 1.45835 1.40020 0.97345 0.86650 0.80712 0.83576 0.77019 1.20208 1.21276 1.20188 1.20990 0.93127 0.96846 1.00230 1.16055 0.84730 0.93425 1.08268 1.25336 0.92274 0.93347 0.93585 1.81191 1.11865 1.07669 1.08946 1.17368 0.86255 0.84896 1.06171 1.84858 1.71714 1.39274 1.33122 0.92014 0.92433 0.88238 0.84186 0.91600 0.91411 0.96161 0.96282 0.92811 0.84284 0.75893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.91 10.28 -34.33 -0.35 -4.26 16 3 C 0.10 1.43 6.69 -39.17 -0.26 1.16 16 4 C -0.16 -2.30 8.68 -39.39 -0.34 -2.65 16 5 C -0.02 -0.37 5.13 -104.69 -0.54 -0.91 16 6 C -0.08 -1.47 5.27 -27.88 -0.15 -1.62 16 7 C 0.03 0.68 4.96 -27.88 -0.14 0.54 16 8 C -0.53 -13.97 9.11 -34.44 -0.31 -14.29 16 9 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 12 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C -0.09 -1.34 9.39 -39.16 -0.37 -1.70 16 17 C -0.02 -0.30 5.75 -106.72 -0.61 -0.91 16 18 C 0.27 4.06 14.87 -22.47 -0.33 3.72 16 19 N -0.42 -6.94 18.54 41.84 0.78 -6.16 16 20 C 0.10 1.40 6.72 -38.60 -0.26 1.14 16 21 O -0.48 -6.13 12.72 -33.69 -0.43 -6.56 16 22 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 23 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.14 1.76 6.27 -52.49 -0.33 1.44 16 26 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 27 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.39 3.07 9.06 45.56 0.41 3.48 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -31.43 292.86 -5.08 -36.51 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -2.78 Total: -1.71 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -2.42 Total: -12.78 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 1.51 Total: -31.42 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.78 Total: -10.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.43 -5.08 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260265747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.324 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds