Wall clock time and date at job start Mon Mar 30 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36004 * 117.00114 * 2 1 4 4 C 1.38525 * 119.99836 * 0.02562 * 3 2 1 5 5 C 1.38470 * 120.33282 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.82717 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47327 * 90.00121 * 6 5 4 8 8 C 1.50697 * 109.46995 * 179.97438 * 7 6 5 9 9 H 1.07991 * 120.00449 * 359.72153 * 8 7 6 10 10 C 1.37885 * 119.99686 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.72095 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.72528 * 10 8 7 13 13 H 1.48498 * 109.47416 * 59.99812 * 12 10 8 14 14 H 1.48508 * 109.46609 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46903 * 299.99397 * 12 10 8 16 16 C 1.37821 * 120.34159 * 0.26933 * 5 4 3 17 17 C 1.39773 * 119.99108 * 359.45859 * 16 5 4 18 18 C 1.43202 * 120.16822 * 180.24583 * 17 16 5 19 19 N 5.85403 * 152.61251 * 0.02562 * 2 1 3 20 20 C 1.39064 * 119.99881 * 179.97438 * 3 2 1 21 21 O 1.35799 * 120.17050 * 0.02562 * 20 3 2 22 22 H 1.09000 * 109.46500 * 299.99405 * 1 2 3 23 23 H 1.08996 * 109.47178 * 59.99325 * 1 2 3 24 24 H 1.08998 * 109.46650 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.83262 * 359.97438 * 4 3 2 26 26 H 1.08998 * 109.47519 * 329.99822 * 6 5 4 27 27 H 1.09006 * 109.47270 * 210.00053 * 6 5 4 28 28 H 1.08998 * 109.47065 * 59.99424 * 7 6 5 29 29 H 1.09001 * 109.46892 * 299.99688 * 7 6 5 30 30 H 0.97000 * 119.99651 * 180.02562 * 11 10 8 31 31 H 1.08001 * 120.00602 * 179.72100 * 16 5 4 32 32 H 0.96701 * 114.00182 * 89.99763 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2920 2.3735 0.0005 5 6 1.9135 3.6110 0.0011 6 6 1.0816 4.8676 0.0011 7 6 0.7995 5.2925 1.4436 8 6 -0.0319 6.5494 1.4435 9 1 -0.3255 7.0026 0.5083 10 6 -0.4132 7.1238 2.6376 11 7 -0.0561 6.5716 3.7765 12 14 -1.4373 8.6860 2.6375 13 1 -2.7207 8.4367 1.9333 14 1 -1.7121 9.0977 4.0377 15 1 -0.6924 9.7660 1.9417 16 6 3.2889 3.6993 -0.0045 17 6 4.0637 2.5360 0.0007 18 6 5.4931 2.6234 0.0002 19 7 6.6269 2.6929 0.0012 20 6 3.4352 1.2845 0.0005 21 8 4.1782 0.1478 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 0.2137 2.3139 0.0005 26 1 0.1391 4.6794 -0.5132 27 1 1.6233 5.6620 -0.5124 28 1 1.7420 5.4806 1.9578 29 1 0.2577 4.4982 1.9570 30 1 -0.3247 6.9755 4.6166 31 1 3.7679 4.6673 -0.0086 32 1 4.3937 -0.1813 -0.8829 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260265747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:31 Heat of formation + Delta-G solvation = -59.799693 kcal Electronic energy + Delta-G solvation = -16869.847377 eV Core-core repulsion = 13988.022642 eV Total energy + Delta-G solvation = -2881.824734 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.59378 -39.14569 -38.19034 -37.48570 -35.53492 -33.54031 -31.65297 -30.26029 -28.28831 -26.66790 -24.74861 -23.71355 -22.19732 -20.03304 -18.97510 -18.37618 -17.81966 -17.67955 -16.99767 -16.48002 -16.21604 -15.33628 -15.15674 -14.74812 -14.63138 -14.44244 -14.33830 -13.96064 -13.60400 -13.31681 -13.21352 -12.80526 -12.73964 -12.56717 -12.22380 -11.95690 -11.76116 -11.66821 -11.38917 -11.14637 -10.49965 -9.78779 -9.14529 -8.15069 -6.25919 -0.40323 0.24375 1.45146 1.46988 1.47709 1.54678 1.82366 2.18696 2.45090 2.67008 2.88044 3.05626 3.19061 3.79631 3.97368 4.14773 4.29915 4.42859 4.46906 4.58775 4.72939 4.82705 4.91424 5.00798 5.04080 5.18069 5.43167 5.50270 5.57988 5.83483 5.90605 6.21930 6.27625 6.33498 6.75421 6.92196 7.43687 8.96001 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.005354 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.806262 B = 5228.608829 C = 6070.561036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.318 6.318 3 C 0.103 3.897 4 C -0.157 4.157 5 C -0.041 4.041 6 C -0.067 4.067 7 C 0.032 3.968 8 C -0.540 4.540 9 H 0.067 0.933 10 C 0.000 4.000 11 N -0.934 5.934 12 Si 0.960 3.040 13 H -0.264 1.264 14 H -0.289 1.289 15 H -0.268 1.268 16 C -0.090 4.090 17 C -0.026 4.026 18 C 0.286 3.714 19 N -0.448 5.448 20 C 0.112 3.888 21 O -0.490 6.490 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.125 0.875 25 H 0.154 0.846 26 H 0.078 0.922 27 H 0.074 0.926 28 H -0.009 1.009 29 H -0.005 1.005 30 H 0.262 0.738 31 H 0.143 0.857 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -11.789 -11.152 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.231 6.231 3 C 0.057 3.943 4 C -0.177 4.177 5 C -0.042 4.042 6 C -0.104 4.104 7 C -0.005 4.005 8 C -0.578 4.578 9 H 0.085 0.915 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.785 3.215 13 H -0.189 1.189 14 H -0.215 1.215 15 H -0.193 1.193 16 C -0.111 4.111 17 C -0.030 4.030 18 C -0.029 4.029 19 N -0.124 5.124 20 C 0.064 3.936 21 O -0.303 6.303 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.143 0.857 25 H 0.171 0.829 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.014 0.986 30 H 0.070 0.930 31 H 0.161 0.839 32 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.000 -11.826 -10.377 15.860 hybrid contribution -0.995 0.876 0.114 1.331 sum 1.005 -10.951 -10.263 15.042 Atomic orbital electron populations 1.23433 0.76244 1.05892 1.02452 1.86108 1.23378 1.25098 1.88527 1.19065 0.90917 0.85565 0.98790 1.21485 1.01617 0.90635 1.03924 1.19887 0.93349 0.95500 0.95441 1.20640 0.98623 0.92816 0.98337 1.18970 0.94978 0.94850 0.91750 1.21698 1.32878 1.10458 0.92732 0.91520 1.25935 0.97544 1.00889 0.95356 1.70098 1.47534 1.41847 0.97981 0.85571 0.79416 0.79547 0.76938 1.18924 1.21471 1.19308 1.21020 0.92977 0.97296 0.99806 1.15981 0.84161 0.93605 1.09246 1.25376 0.92246 0.92526 0.92724 1.81204 1.12601 1.08537 1.10094 1.17430 0.86572 0.84993 1.04649 1.84792 1.71498 1.38761 1.35208 0.92516 0.90929 0.85690 0.82860 0.90343 0.90698 0.99019 0.98628 0.92952 0.83889 0.73255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.34 10.28 -79.65 -0.82 -8.16 16 3 C 0.10 2.64 6.69 22.54 0.15 2.79 16 4 C -0.16 -4.19 8.68 22.39 0.19 -4.00 16 5 C -0.04 -1.25 5.13 -19.91 -0.10 -1.35 16 6 C -0.07 -2.35 5.27 29.85 0.16 -2.19 16 7 C 0.03 1.53 4.96 29.85 0.15 1.68 16 8 C -0.54 -28.64 9.11 25.60 0.23 -28.40 16 9 H 0.07 3.32 7.74 -2.92 -0.02 3.30 16 10 C 0.00 0.03 5.46 84.66 0.46 0.49 16 11 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 12 Si 0.96 42.48 29.54 68.60 2.03 44.50 16 13 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 14 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 16 C -0.09 -2.58 9.39 22.54 0.21 -2.37 16 17 C -0.03 -0.71 5.75 -21.22 -0.12 -0.83 16 18 C 0.29 8.38 14.87 88.33 1.31 9.69 16 19 N -0.45 -14.52 18.54 19.00 0.35 -14.17 16 20 C 0.11 2.92 6.72 22.91 0.15 3.08 16 21 O -0.49 -11.54 12.72 -77.36 -0.98 -12.52 16 22 H 0.06 0.96 7.66 -2.39 -0.02 0.95 16 23 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 24 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.15 3.59 6.27 -2.91 -0.02 3.57 16 26 H 0.08 2.53 8.08 -2.39 -0.02 2.51 16 27 H 0.07 2.50 8.08 -2.38 -0.02 2.48 16 28 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.41 5.56 9.06 -74.06 -0.67 4.89 16 Total: -1.00 -66.95 292.86 5.26 -61.69 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 0.48 Total: 3.85 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 3.91 Total: -20.09 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: 0.64 Total: -69.27 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.80 Total: -20.68 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -66.95 5.26 -61.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260265747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.891 kcal (2) G-P(sol) polarization free energy of solvation -66.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds