Wall clock time and date at job start Mon Mar 30 2020 06:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00310 * 2 1 4 4 H 1.48506 * 109.47113 * 90.00548 * 3 2 1 5 5 H 1.48506 * 109.47409 * 210.00267 * 3 2 1 6 6 H 1.48497 * 109.47576 * 330.00402 * 3 2 1 7 7 C 1.37877 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00225 * 175.04276 * 7 2 1 9 9 C 1.50699 * 119.99870 * 355.03985 * 7 2 1 10 10 H 1.09001 * 109.47369 * 324.69609 * 9 7 2 11 11 N 1.46899 * 109.47047 * 84.69227 * 9 7 2 12 12 C 1.50698 * 109.47186 * 204.69226 * 9 7 2 13 13 C 1.38180 * 120.14597 * 265.00044 * 12 9 7 14 14 C 1.37951 * 119.83437 * 180.10248 * 13 12 9 15 15 C 1.38958 * 120.66438 * 359.88845 * 14 13 12 16 16 C 1.37566 * 119.71774 * 359.94930 * 15 14 13 17 17 C 1.38429 * 120.14794 * 84.73033 * 12 9 7 18 18 O 1.35900 * 119.78397 * 0.04332 * 17 12 9 19 19 C 1.50624 * 122.59791 * 180.39740 * 16 15 14 20 20 C 1.52742 * 110.58938 * 342.30720 * 19 16 15 21 21 C 1.53321 * 108.37535 * 51.06208 * 20 19 16 22 22 C 1.50644 * 117.72607 * 179.73506 * 15 14 13 23 23 H 0.96999 * 120.00627 * 177.41264 * 1 2 3 24 24 H 1.00902 * 111.00548 * 294.30625 * 11 9 7 25 25 H 1.00898 * 111.00445 * 58.26546 * 11 9 7 26 26 H 1.08003 * 120.08403 * 0.12523 * 13 12 9 27 27 H 1.08000 * 119.67052 * 179.90458 * 14 13 12 28 28 H 0.96700 * 114.00028 * 90.00460 * 18 17 12 29 29 H 1.08996 * 109.25711 * 222.01706 * 19 16 15 30 30 H 1.09003 * 109.22298 * 102.57112 * 19 16 15 31 31 H 1.09000 * 109.67684 * 291.33994 * 20 19 16 32 32 H 1.09001 * 109.68374 * 170.78284 * 20 19 16 33 33 H 1.09000 * 109.68445 * 170.42628 * 21 20 19 34 34 H 1.09000 * 109.68867 * 49.86725 * 21 20 19 35 35 H 1.09001 * 109.25252 * 282.78407 * 22 15 14 36 36 H 1.09001 * 109.25131 * 42.21138 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1959 -0.0814 9 6 1.2551 -2.4967 0.1117 10 1 0.3940 -2.3653 0.7669 11 7 0.7977 -2.9148 -1.2201 12 6 2.1656 -3.5523 0.6844 13 6 2.8565 -4.4034 -0.1568 14 6 3.6866 -5.3687 0.3744 15 6 3.8383 -5.4941 1.7500 16 6 3.1552 -4.6469 2.5914 17 6 2.3178 -3.6699 2.0552 18 8 1.6426 -2.8306 2.8839 19 6 3.2782 -4.7194 4.0909 20 6 3.8647 -6.0637 4.5174 21 6 5.1455 -6.3098 3.7112 22 6 4.7566 -6.5747 2.2582 23 1 -0.4851 -0.8391 -0.0379 24 1 0.1139 -2.2696 -1.5867 25 1 1.5757 -3.0161 -1.8545 26 1 2.7472 -4.3129 -1.2275 27 1 4.2242 -6.0336 -0.2855 28 1 0.7720 -3.1568 3.1499 29 1 2.2917 -4.5993 4.5387 30 1 3.9299 -3.9170 4.4367 31 1 3.1460 -6.8581 4.3164 32 1 4.0994 -6.0408 5.5816 33 1 5.6722 -7.1750 4.1138 34 1 5.7878 -5.4307 3.7649 35 1 4.2500 -7.5376 2.1916 36 1 5.6568 -6.5997 1.6440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260274494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:23 Heat of formation + Delta-G solvation = -45.477937 kcal Electronic energy + Delta-G solvation = -18169.920169 eV Core-core repulsion = 15424.549567 eV Total energy + Delta-G solvation = -2745.370602 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92560 -37.01360 -35.84433 -34.27008 -31.49091 -31.17926 -29.19792 -28.06841 -25.40830 -23.46999 -22.88822 -21.51534 -20.89009 -18.72424 -17.49680 -16.95417 -15.91092 -15.39946 -14.81162 -14.43245 -13.97853 -13.78737 -13.68946 -13.41411 -12.88439 -12.73429 -12.41746 -12.23759 -11.96197 -11.77961 -11.48407 -10.85787 -10.80620 -10.75546 -10.64857 -10.39954 -10.17522 -9.94879 -9.45046 -9.37846 -8.59964 -7.95041 -7.82236 -7.24288 -6.40594 -4.18154 1.88218 1.99231 3.41455 3.43441 3.59432 4.22475 4.50327 4.78590 4.85113 4.96167 5.00713 5.25899 5.31802 5.44830 5.59419 5.65687 5.67408 5.70687 5.83839 5.94946 6.04368 6.07535 6.10505 6.28260 6.38319 6.42340 6.53928 6.61030 6.93251 7.06981 7.13084 7.43946 7.52728 7.93157 8.27172 8.37923 8.48267 8.66572 8.76922 9.53129 10.92452 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029600 B = 0.006709 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.709235 B = 4172.573587 C = 4496.629768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.030 3.970 3 Si 1.069 2.931 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.611 4.611 8 H 0.046 0.954 9 C 0.229 3.771 10 H 0.053 0.947 11 N -0.856 5.856 12 C -0.048 4.048 13 C -0.104 4.104 14 C -0.134 4.134 15 C -0.095 4.095 16 C -0.106 4.106 17 C 0.099 3.901 18 O -0.481 6.481 19 C -0.069 4.069 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.072 4.072 23 H 0.269 0.731 24 H 0.332 0.668 25 H 0.320 0.680 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.374 0.626 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.651 -11.906 5.608 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.176 4.176 3 Si 0.898 3.102 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.651 4.651 8 H 0.065 0.935 9 C 0.120 3.880 10 H 0.071 0.929 11 N -0.383 5.383 12 C -0.049 4.049 13 C -0.122 4.122 14 C -0.153 4.153 15 C -0.095 4.095 16 C -0.106 4.106 17 C 0.053 3.947 18 O -0.289 6.289 19 C -0.106 4.106 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.109 4.109 23 H 0.081 0.919 24 H 0.143 0.857 25 H 0.131 0.869 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.228 0.772 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.673 -10.567 5.964 13.848 hybrid contribution 0.237 -0.881 -0.346 0.976 sum 6.910 -11.448 5.618 14.504 Atomic orbital electron populations 1.70810 1.06779 1.30639 1.46118 1.25831 0.96402 1.02551 0.92817 0.83541 0.74664 0.75071 0.76955 1.21260 1.21575 1.21061 1.22424 0.94959 0.91994 1.55731 0.93519 1.17998 0.92931 0.89305 0.87765 0.92939 1.59648 1.17755 1.54881 1.06027 1.20564 0.97040 0.94993 0.92280 1.20764 0.96426 0.95179 0.99833 1.21017 1.00383 0.99647 0.94206 1.19204 0.99485 0.97911 0.92893 1.19721 0.99728 0.95880 0.95310 1.18258 0.96664 0.91177 0.88553 1.84931 1.33005 1.45076 1.65915 1.20228 1.01288 0.97291 0.91764 1.21546 0.97310 0.97575 0.99093 1.21534 0.97526 1.01460 0.95119 1.20353 0.97814 0.96712 0.95987 0.91928 0.85652 0.86900 0.86070 0.87054 0.77215 0.91329 0.90993 0.91913 0.91906 0.91968 0.91734 0.91363 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.60 13.60 55.43 0.75 -25.84 16 2 C 0.03 0.83 5.45 -17.82 -0.10 0.74 16 3 Si 1.07 25.60 29.91 -169.99 -5.08 20.52 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.61 -17.09 8.57 -34.44 -0.30 -17.38 16 8 H 0.05 1.36 7.81 -52.49 -0.41 0.95 16 9 C 0.23 5.72 2.26 -70.02 -0.16 5.56 16 10 H 0.05 1.43 6.60 -51.93 -0.34 1.09 16 11 N -0.86 -19.41 8.78 -6.65 -0.06 -19.47 16 12 C -0.05 -1.07 5.04 -104.57 -0.53 -1.60 16 13 C -0.10 -2.07 9.27 -39.71 -0.37 -2.43 16 14 C -0.13 -2.31 9.60 -39.42 -0.38 -2.69 16 15 C -0.09 -1.56 5.74 -104.63 -0.60 -2.16 16 16 C -0.11 -1.89 5.75 -104.47 -0.60 -2.49 16 17 C 0.10 2.07 6.64 -39.08 -0.26 1.81 16 18 O -0.48 -9.99 11.66 -19.43 -0.23 -10.21 16 19 C -0.07 -1.00 5.27 -28.05 -0.15 -1.15 16 20 C -0.12 -1.37 5.98 -26.70 -0.16 -1.53 16 21 C -0.12 -1.35 5.98 -26.70 -0.16 -1.51 16 22 C -0.07 -0.90 5.67 -28.05 -0.16 -1.06 16 23 H 0.27 7.80 6.22 -40.82 -0.25 7.55 16 24 H 0.33 7.79 8.41 -39.29 -0.33 7.46 16 25 H 0.32 6.90 7.30 -39.29 -0.29 6.61 16 26 H 0.12 2.31 6.36 -52.48 -0.33 1.98 16 27 H 0.11 1.59 8.05 -52.49 -0.42 1.17 16 28 H 0.37 6.09 9.06 45.56 0.41 6.50 16 29 H 0.07 0.95 7.77 -51.93 -0.40 0.55 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 LS Contribution 290.96 15.07 4.38 4.38 Total: -1.00 -30.98 290.96 -8.26 -39.24 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -4.12 Total: 17.29 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -3.91 Total: -25.90 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.70 Total: -45.31 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.23 Total: -10.21 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.98 -8.26 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.241 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds