Wall clock time and date at job start Mon Mar 30 2020 06:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00310 * 2 1 4 4 H 1.48506 * 109.47113 * 90.00548 * 3 2 1 5 5 H 1.48506 * 109.47409 * 210.00267 * 3 2 1 6 6 H 1.48497 * 109.47576 * 330.00402 * 3 2 1 7 7 C 1.37877 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00225 * 175.04276 * 7 2 1 9 9 C 1.50699 * 119.99870 * 355.03985 * 7 2 1 10 10 H 1.09001 * 109.47369 * 324.69609 * 9 7 2 11 11 N 1.46899 * 109.47047 * 84.69227 * 9 7 2 12 12 C 1.50698 * 109.47186 * 204.69226 * 9 7 2 13 13 C 1.38180 * 120.14597 * 265.00044 * 12 9 7 14 14 C 1.37951 * 119.83437 * 180.10248 * 13 12 9 15 15 C 1.38958 * 120.66438 * 359.88845 * 14 13 12 16 16 C 1.37566 * 119.71774 * 359.94930 * 15 14 13 17 17 C 1.38429 * 120.14794 * 84.73033 * 12 9 7 18 18 O 1.35900 * 119.78397 * 0.04332 * 17 12 9 19 19 C 1.50624 * 122.59791 * 180.39740 * 16 15 14 20 20 C 1.52742 * 110.58938 * 342.30720 * 19 16 15 21 21 C 1.53321 * 108.37535 * 51.06208 * 20 19 16 22 22 C 1.50644 * 117.72607 * 179.73506 * 15 14 13 23 23 H 0.96999 * 120.00627 * 177.41264 * 1 2 3 24 24 H 1.00902 * 111.00548 * 294.30625 * 11 9 7 25 25 H 1.00898 * 111.00445 * 58.26546 * 11 9 7 26 26 H 1.08003 * 120.08403 * 0.12523 * 13 12 9 27 27 H 1.08000 * 119.67052 * 179.90458 * 14 13 12 28 28 H 0.96700 * 114.00028 * 90.00460 * 18 17 12 29 29 H 1.08996 * 109.25711 * 222.01706 * 19 16 15 30 30 H 1.09003 * 109.22298 * 102.57112 * 19 16 15 31 31 H 1.09000 * 109.67684 * 291.33994 * 20 19 16 32 32 H 1.09001 * 109.68374 * 170.78284 * 20 19 16 33 33 H 1.09000 * 109.68445 * 170.42628 * 21 20 19 34 34 H 1.09000 * 109.68867 * 49.86725 * 21 20 19 35 35 H 1.09001 * 109.25252 * 282.78407 * 22 15 14 36 36 H 1.09001 * 109.25131 * 42.21138 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1959 -0.0814 9 6 1.2551 -2.4967 0.1117 10 1 0.3940 -2.3653 0.7669 11 7 0.7977 -2.9148 -1.2201 12 6 2.1656 -3.5523 0.6844 13 6 2.8565 -4.4034 -0.1568 14 6 3.6866 -5.3687 0.3744 15 6 3.8383 -5.4941 1.7500 16 6 3.1552 -4.6469 2.5914 17 6 2.3178 -3.6699 2.0552 18 8 1.6426 -2.8306 2.8839 19 6 3.2782 -4.7194 4.0909 20 6 3.8647 -6.0637 4.5174 21 6 5.1455 -6.3098 3.7112 22 6 4.7566 -6.5747 2.2582 23 1 -0.4851 -0.8391 -0.0379 24 1 0.1139 -2.2696 -1.5867 25 1 1.5757 -3.0161 -1.8545 26 1 2.7472 -4.3129 -1.2275 27 1 4.2242 -6.0336 -0.2855 28 1 0.7720 -3.1568 3.1499 29 1 2.2917 -4.5993 4.5387 30 1 3.9299 -3.9170 4.4367 31 1 3.1460 -6.8581 4.3164 32 1 4.0994 -6.0408 5.5816 33 1 5.6722 -7.1750 4.1138 34 1 5.7878 -5.4307 3.7649 35 1 4.2500 -7.5376 2.1916 36 1 5.6568 -6.5997 1.6440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260274494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:23 Heat of formation + Delta-G solvation = -66.909479 kcal Electronic energy + Delta-G solvation = -18170.849510 eV Core-core repulsion = 15424.549567 eV Total energy + Delta-G solvation = -2746.299943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33084 -38.38160 -37.50446 -35.90263 -33.39008 -32.44107 -30.63991 -29.48596 -27.37258 -24.95407 -24.25644 -22.91119 -22.36228 -20.07645 -19.07533 -18.92039 -17.47564 -16.95460 -16.06960 -15.84208 -15.73295 -15.36468 -14.84043 -14.76303 -14.66735 -14.22987 -13.97878 -13.60507 -13.56672 -13.08098 -12.95037 -12.71757 -12.21163 -12.03399 -11.87201 -11.76067 -11.71117 -11.46372 -11.32654 -10.87141 -10.72495 -9.51115 -9.38121 -9.12757 -8.57706 -6.42402 0.41566 0.52662 1.45518 1.52611 1.71020 2.47724 2.78731 3.10750 3.41783 3.73361 3.83919 3.97411 4.06023 4.26734 4.30530 4.34059 4.51096 4.58688 4.68005 4.70979 4.83377 4.98665 5.02927 5.06691 5.11973 5.17176 5.23265 5.40163 5.47282 5.62028 5.71134 5.76994 5.88542 6.03250 6.08457 6.50139 6.53123 6.76448 6.92324 7.35209 8.68244 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029600 B = 0.006709 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.709235 B = 4172.573587 C = 4496.629768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.016 4.016 3 Si 1.111 2.889 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.619 4.619 8 H 0.027 0.973 9 C 0.237 3.763 10 H 0.020 0.980 11 N -0.841 5.841 12 C -0.089 4.089 13 C -0.117 4.117 14 C -0.131 4.131 15 C -0.088 4.088 16 C -0.111 4.111 17 C 0.076 3.924 18 O -0.501 6.501 19 C -0.070 4.070 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.072 4.072 23 H 0.260 0.740 24 H 0.326 0.674 25 H 0.328 0.672 26 H 0.122 0.878 27 H 0.147 0.853 28 H 0.387 0.613 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 -13.842 6.364 17.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.216 4.216 3 Si 0.934 3.066 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.659 4.659 8 H 0.046 0.954 9 C 0.127 3.873 10 H 0.038 0.962 11 N -0.368 5.368 12 C -0.091 4.091 13 C -0.135 4.135 14 C -0.149 4.149 15 C -0.088 4.088 16 C -0.112 4.112 17 C 0.031 3.969 18 O -0.311 6.311 19 C -0.107 4.107 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.109 4.109 23 H 0.071 0.929 24 H 0.136 0.864 25 H 0.139 0.861 26 H 0.140 0.860 27 H 0.164 0.836 28 H 0.243 0.757 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.757 -12.532 6.717 16.699 hybrid contribution -0.389 -0.383 -0.557 0.780 sum 8.367 -12.915 6.160 16.576 Atomic orbital electron populations 1.70906 1.07401 1.30157 1.47925 1.27070 0.96584 1.05778 0.92209 0.83002 0.74213 0.72013 0.77405 1.20632 1.20223 1.20259 1.22636 0.94052 0.93824 1.55347 0.95427 1.17725 0.91992 0.89575 0.87984 0.96216 1.59568 1.17708 1.54094 1.05440 1.20508 0.98741 0.96236 0.93573 1.20881 0.97158 0.95782 0.99698 1.21400 0.99319 0.98902 0.95273 1.19795 0.98566 0.97861 0.92554 1.20090 0.98710 0.94966 0.97389 1.18596 0.97786 0.92292 0.88216 1.84860 1.34074 1.46204 1.65984 1.20300 1.01608 0.99211 0.89546 1.21553 0.97504 0.95464 1.00477 1.21568 0.97271 1.02441 0.94253 1.20490 0.97620 0.95731 0.97024 0.92907 0.86382 0.86060 0.86010 0.83550 0.75723 0.91190 0.91818 0.91295 0.89755 0.88889 0.92636 0.89308 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.60 21.45 0.29 -55.58 16 2 C -0.02 -0.93 5.45 84.65 0.46 -0.47 16 3 Si 1.11 52.13 29.91 68.60 2.05 54.18 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.62 -35.73 8.57 25.60 0.22 -35.51 16 8 H 0.03 1.66 7.81 -2.91 -0.02 1.63 16 9 C 0.24 12.34 2.26 43.42 0.10 12.44 16 10 H 0.02 1.15 6.60 -2.39 -0.02 1.13 16 11 N -0.84 -39.46 8.78 -174.96 -1.54 -41.00 16 12 C -0.09 -4.13 5.04 -19.83 -0.10 -4.23 16 13 C -0.12 -4.64 9.27 22.19 0.21 -4.43 16 14 C -0.13 -4.21 9.60 22.37 0.21 -4.00 16 15 C -0.09 -2.66 5.74 -19.87 -0.11 -2.78 16 16 C -0.11 -3.85 5.75 -19.77 -0.11 -3.96 16 17 C 0.08 3.25 6.64 22.60 0.15 3.40 16 18 O -0.50 -21.70 11.66 -92.43 -1.08 -22.78 16 19 C -0.07 -1.93 5.27 29.74 0.16 -1.77 16 20 C -0.11 -2.22 5.98 30.62 0.18 -2.04 16 21 C -0.12 -2.16 5.98 30.61 0.18 -1.97 16 22 C -0.07 -1.48 5.67 29.74 0.17 -1.32 16 23 H 0.26 15.74 6.22 -92.71 -0.58 15.17 16 24 H 0.33 15.87 8.41 -89.69 -0.75 15.11 16 25 H 0.33 14.46 7.30 -89.70 -0.65 13.80 16 26 H 0.12 4.65 6.36 -2.91 -0.02 4.63 16 27 H 0.15 3.62 8.05 -2.91 -0.02 3.60 16 28 H 0.39 13.44 9.06 -74.06 -0.67 12.77 16 29 H 0.07 1.88 7.77 -2.39 -0.02 1.86 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.53 8.13 -2.39 -0.02 1.51 16 Total: -1.00 -68.59 290.96 0.67 -67.91 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: -0.77 Total: 43.91 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 1.71 Total: -46.65 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -1.24 Total: -96.58 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -1.08 Total: -22.78 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.05 Total: 54.18 kcal Total: -68.59 0.67 -67.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.005 kcal (2) G-P(sol) polarization free energy of solvation -68.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds