Wall clock time and date at job start Mon Mar 30 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99821 * 2 1 4 4 H 1.48494 * 109.47113 * 239.99972 * 3 2 1 5 5 H 1.48500 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46772 * 120.00435 * 3 2 1 7 7 C 1.37880 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99398 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00195 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47607 * 60.00403 * 9 7 2 11 11 N 1.46903 * 109.47118 * 300.00079 * 9 7 2 12 12 C 1.50704 * 109.47148 * 180.02562 * 9 7 2 13 13 C 1.38175 * 120.14781 * 100.01989 * 12 9 7 14 14 C 1.37956 * 119.83280 * 180.12145 * 13 12 9 15 15 C 1.38953 * 120.66529 * 359.97438 * 14 13 12 16 16 C 1.37572 * 119.71074 * 359.47306 * 15 14 13 17 17 C 1.38436 * 120.14403 * 279.99907 * 12 9 7 18 18 O 1.35905 * 119.78608 * 359.97438 * 17 12 9 19 19 C 1.50634 * 122.58667 * 180.98489 * 16 15 14 20 20 C 1.52730 * 110.57989 * 342.17236 * 19 16 15 21 21 C 1.53321 * 108.38521 * 51.16880 * 20 19 16 22 22 C 1.50640 * 117.73775 * 179.35993 * 15 14 13 23 23 H 0.97000 * 120.00113 * 359.97438 * 1 2 3 24 24 H 1.00897 * 111.00369 * 299.99735 * 11 9 7 25 25 H 1.00895 * 110.99797 * 63.95808 * 11 9 7 26 26 H 1.07994 * 120.08329 * 0.10026 * 13 12 9 27 27 H 1.08000 * 119.66711 * 180.02562 * 14 13 12 28 28 H 0.96705 * 113.99576 * 90.00161 * 18 17 12 29 29 H 1.08994 * 109.25527 * 102.45704 * 19 16 15 30 30 H 1.09000 * 109.24820 * 221.89175 * 19 16 15 31 31 H 1.08997 * 109.68237 * 170.89356 * 20 19 16 32 32 H 1.08998 * 109.68229 * 291.44076 * 20 19 16 33 33 H 1.09000 * 109.67535 * 49.94787 * 21 20 19 34 34 H 1.08995 * 109.67711 * 170.49029 * 21 20 19 35 35 H 1.08997 * 109.24860 * 282.65571 * 22 15 14 36 36 H 1.08998 * 109.24823 * 42.07721 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.5233 -4.3071 1.1761 14 6 3.4227 -5.3532 1.1691 15 6 4.0391 -5.7500 -0.0114 16 6 3.7420 -5.1008 -1.1873 17 6 2.8402 -4.0379 -1.1795 18 8 2.5525 -3.3880 -2.3379 19 6 4.3550 -5.4910 -2.5068 20 6 5.6063 -6.3389 -2.2875 21 6 5.2528 -7.4846 -1.3319 22 6 5.0210 -6.8902 0.0593 23 1 -0.4850 0.8400 0.0004 24 1 0.9652 -2.5260 2.0381 25 1 -0.3004 -1.8578 1.1911 26 1 2.0497 -4.0066 2.0989 27 1 3.6494 -5.8695 2.0902 28 1 3.1304 -2.6342 -2.5199 29 1 3.6297 -6.0635 -3.0848 30 1 4.6234 -4.5902 -3.0588 31 1 5.9451 -6.7465 -3.2399 32 1 6.3935 -5.7252 -1.8496 33 1 4.3498 -7.9866 -1.6791 34 1 6.0770 -8.1967 -1.2920 35 1 5.9641 -6.5274 0.4678 36 1 4.6228 -7.6674 0.7115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260274499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:27 Heat of formation + Delta-G solvation = -43.357257 kcal Electronic energy + Delta-G solvation = -18127.655952 eV Core-core repulsion = 15382.377310 eV Total energy + Delta-G solvation = -2745.278642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.83862 -36.90262 -35.68246 -34.05551 -31.49546 -31.10932 -29.01886 -27.97693 -25.84909 -23.49542 -22.81982 -21.41909 -20.70038 -18.55202 -17.36759 -16.48845 -15.72299 -15.45808 -14.73846 -14.52660 -14.15047 -13.78245 -13.64426 -13.15884 -12.79576 -12.70129 -12.43917 -11.89676 -11.77972 -11.73824 -11.19089 -11.00701 -10.80044 -10.71543 -10.68532 -10.55929 -10.31752 -9.99558 -9.86820 -9.25457 -8.66904 -7.87074 -7.64498 -7.17236 -6.08992 -4.26878 1.96012 2.07155 3.21143 3.27214 3.29210 4.23844 4.38104 4.86486 4.89639 5.00634 5.10385 5.12625 5.36101 5.51026 5.66233 5.70701 5.75070 5.78991 5.93195 5.99501 6.11888 6.14844 6.18763 6.39044 6.42131 6.59438 6.69394 6.74662 7.14292 7.19883 7.23548 7.57100 7.70318 7.80257 8.09037 8.48221 8.67568 8.92699 9.12111 9.44812 10.88014 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031833 B = 0.006502 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.385472 B = 4305.400716 C = 4651.812888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.245 3.755 10 H 0.056 0.944 11 N -0.851 5.851 12 C -0.053 4.053 13 C -0.101 4.101 14 C -0.136 4.136 15 C -0.095 4.095 16 C -0.108 4.108 17 C 0.099 3.901 18 O -0.491 6.491 19 C -0.068 4.068 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.072 4.072 23 H 0.266 0.734 24 H 0.310 0.690 25 H 0.355 0.645 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.384 0.616 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -10.307 -1.325 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.070 0.930 9 C 0.135 3.865 10 H 0.073 0.927 11 N -0.381 5.381 12 C -0.054 4.054 13 C -0.119 4.119 14 C -0.155 4.155 15 C -0.095 4.095 16 C -0.109 4.109 17 C 0.054 3.946 18 O -0.300 6.300 19 C -0.105 4.105 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.109 4.109 23 H 0.076 0.924 24 H 0.119 0.881 25 H 0.171 0.829 26 H 0.143 0.857 27 H 0.129 0.871 28 H 0.239 0.761 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.613 -11.324 -1.665 14.324 hybrid contribution 1.155 2.449 0.292 2.723 sum 9.767 -8.875 -1.373 13.268 Atomic orbital electron populations 1.69736 1.05846 1.27283 1.50117 1.25010 0.94915 0.99193 0.94380 0.86590 0.79561 0.82781 0.78656 1.20186 1.21161 1.20318 1.21693 0.93283 0.91065 1.52190 0.93012 1.17845 0.89111 0.87793 0.91759 0.92667 1.59553 1.18491 1.56056 1.04042 1.20789 0.96854 0.96355 0.91411 1.20831 0.97275 0.95335 0.98491 1.21030 0.98780 0.98719 0.96932 1.19197 0.99589 0.98249 0.92507 1.19708 0.98400 0.97999 0.94783 1.18270 0.96646 0.94052 0.85681 1.84708 1.60166 1.47205 1.37937 1.20216 0.96284 0.99647 0.94353 1.21552 0.97775 0.97147 0.99137 1.21588 1.01254 0.97407 0.95318 1.20406 0.97783 0.95467 0.97224 0.92389 0.88054 0.82855 0.85742 0.87150 0.76064 0.91159 0.91298 0.92013 0.91904 0.91719 0.92078 0.91315 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 11.54 55.43 0.64 -23.93 16 2 C 0.07 1.81 5.38 -17.82 -0.10 1.71 16 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.40 8.70 -34.44 -0.30 -14.70 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.24 6.21 2.60 -70.02 -0.18 6.03 16 10 H 0.06 1.60 7.85 -51.93 -0.41 1.19 16 11 N -0.85 -20.62 8.67 -6.65 -0.06 -20.68 16 12 C -0.05 -1.19 5.03 -104.57 -0.53 -1.71 16 13 C -0.10 -2.02 9.25 -39.71 -0.37 -2.39 16 14 C -0.14 -2.35 9.60 -39.42 -0.38 -2.73 16 15 C -0.10 -1.57 5.73 -104.63 -0.60 -2.17 16 16 C -0.11 -1.92 5.75 -104.47 -0.60 -2.52 16 17 C 0.10 2.04 6.63 -39.08 -0.26 1.78 16 18 O -0.49 -9.91 11.74 -19.44 -0.23 -10.14 16 19 C -0.07 -0.98 5.28 -28.05 -0.15 -1.13 16 20 C -0.12 -1.39 5.97 -26.70 -0.16 -1.55 16 21 C -0.12 -1.33 6.00 -26.54 -0.16 -1.49 16 22 C -0.07 -0.91 5.68 -27.89 -0.16 -1.06 16 23 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.31 7.07 7.30 -39.29 -0.29 6.78 16 25 H 0.36 9.19 7.08 -39.29 -0.28 8.91 16 26 H 0.12 2.41 6.27 -52.49 -0.33 2.08 16 27 H 0.11 1.59 8.05 -52.49 -0.42 1.17 16 28 H 0.38 6.62 9.06 45.56 0.41 7.03 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.96 7.74 -51.93 -0.40 0.56 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 33 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 LS Contribution 290.70 15.07 4.38 4.38 Total: -1.00 -28.60 290.70 -8.43 -37.03 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -4.21 Total: 19.58 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -3.93 Total: -21.93 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.58 Total: -44.61 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.23 Total: -10.14 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.60 -8.43 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.329 kcal (2) G-P(sol) polarization free energy of solvation -28.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds