Wall clock time and date at job start Mon Mar 30 2020 06:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99821 * 2 1 4 4 H 1.48494 * 109.47113 * 239.99972 * 3 2 1 5 5 H 1.48500 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46772 * 120.00435 * 3 2 1 7 7 C 1.37880 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99398 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00195 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47607 * 60.00403 * 9 7 2 11 11 N 1.46903 * 109.47118 * 300.00079 * 9 7 2 12 12 C 1.50704 * 109.47148 * 180.02562 * 9 7 2 13 13 C 1.38175 * 120.14781 * 100.01989 * 12 9 7 14 14 C 1.37956 * 119.83280 * 180.12145 * 13 12 9 15 15 C 1.38953 * 120.66529 * 359.97438 * 14 13 12 16 16 C 1.37572 * 119.71074 * 359.47306 * 15 14 13 17 17 C 1.38436 * 120.14403 * 279.99907 * 12 9 7 18 18 O 1.35905 * 119.78608 * 359.97438 * 17 12 9 19 19 C 1.50634 * 122.58667 * 180.98489 * 16 15 14 20 20 C 1.52730 * 110.57989 * 342.17236 * 19 16 15 21 21 C 1.53321 * 108.38521 * 51.16880 * 20 19 16 22 22 C 1.50640 * 117.73775 * 179.35993 * 15 14 13 23 23 H 0.97000 * 120.00113 * 359.97438 * 1 2 3 24 24 H 1.00897 * 111.00369 * 299.99735 * 11 9 7 25 25 H 1.00895 * 110.99797 * 63.95808 * 11 9 7 26 26 H 1.07994 * 120.08329 * 0.10026 * 13 12 9 27 27 H 1.08000 * 119.66711 * 180.02562 * 14 13 12 28 28 H 0.96705 * 113.99576 * 90.00161 * 18 17 12 29 29 H 1.08994 * 109.25527 * 102.45704 * 19 16 15 30 30 H 1.09000 * 109.24820 * 221.89175 * 19 16 15 31 31 H 1.08997 * 109.68237 * 170.89356 * 20 19 16 32 32 H 1.08998 * 109.68229 * 291.44076 * 20 19 16 33 33 H 1.09000 * 109.67535 * 49.94787 * 21 20 19 34 34 H 1.08995 * 109.67711 * 170.49029 * 21 20 19 35 35 H 1.08997 * 109.24860 * 282.65571 * 22 15 14 36 36 H 1.08998 * 109.24823 * 42.07721 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.5233 -4.3071 1.1761 14 6 3.4227 -5.3532 1.1691 15 6 4.0391 -5.7500 -0.0114 16 6 3.7420 -5.1008 -1.1873 17 6 2.8402 -4.0379 -1.1795 18 8 2.5525 -3.3880 -2.3379 19 6 4.3550 -5.4910 -2.5068 20 6 5.6063 -6.3389 -2.2875 21 6 5.2528 -7.4846 -1.3319 22 6 5.0210 -6.8902 0.0593 23 1 -0.4850 0.8400 0.0004 24 1 0.9652 -2.5260 2.0381 25 1 -0.3004 -1.8578 1.1911 26 1 2.0497 -4.0066 2.0989 27 1 3.6494 -5.8695 2.0902 28 1 3.1304 -2.6342 -2.5199 29 1 3.6297 -6.0635 -3.0848 30 1 4.6234 -4.5902 -3.0588 31 1 5.9451 -6.7465 -3.2399 32 1 6.3935 -5.7252 -1.8496 33 1 4.3498 -7.9866 -1.6791 34 1 6.0770 -8.1967 -1.2920 35 1 5.9641 -6.5274 0.4678 36 1 4.6228 -7.6674 0.7115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260274499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:26 Heat of formation + Delta-G solvation = -62.444151 kcal Electronic energy + Delta-G solvation = -18128.483622 eV Core-core repulsion = 15382.377310 eV Total energy + Delta-G solvation = -2746.106312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23826 -38.25527 -37.30293 -35.71188 -33.35625 -32.35714 -30.47645 -29.43891 -27.78452 -24.91259 -24.15131 -22.81772 -22.14522 -19.89116 -18.92259 -18.48694 -17.30626 -16.98688 -16.41304 -15.81048 -15.64179 -15.21060 -14.73820 -14.62650 -14.58037 -14.01152 -13.72993 -13.57430 -13.30300 -13.05511 -12.89170 -12.77949 -12.56156 -12.23044 -11.87523 -11.74147 -11.67578 -11.64735 -11.27608 -10.78469 -10.69507 -9.33892 -9.29876 -9.04067 -8.11793 -6.39404 0.48912 0.60728 1.37060 1.37400 1.45996 2.34402 2.85234 3.04343 3.54696 3.81762 3.90720 4.10198 4.17394 4.32933 4.38556 4.44669 4.66441 4.69341 4.72832 4.77505 5.01140 5.04495 5.09207 5.15601 5.20000 5.23004 5.33406 5.50707 5.51576 5.59255 5.72514 5.79645 5.95140 6.04558 6.17634 6.63621 6.90015 6.97900 7.08464 7.36714 8.82072 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031833 B = 0.006502 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.385472 B = 4305.400716 C = 4651.812888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.046 0.954 9 C 0.253 3.747 10 H 0.005 0.995 11 N -0.844 5.844 12 C -0.092 4.092 13 C -0.115 4.115 14 C -0.133 4.133 15 C -0.089 4.089 16 C -0.112 4.112 17 C 0.077 3.923 18 O -0.504 6.504 19 C -0.069 4.069 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.072 4.072 23 H 0.267 0.733 24 H 0.318 0.682 25 H 0.344 0.656 26 H 0.123 0.877 27 H 0.145 0.855 28 H 0.391 0.609 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.055 -11.841 -0.987 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.592 4.592 8 H 0.064 0.936 9 C 0.143 3.857 10 H 0.023 0.977 11 N -0.373 5.373 12 C -0.093 4.093 13 C -0.133 4.133 14 C -0.150 4.150 15 C -0.089 4.089 16 C -0.113 4.113 17 C 0.032 3.968 18 O -0.314 6.314 19 C -0.106 4.106 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.109 4.109 23 H 0.077 0.923 24 H 0.129 0.871 25 H 0.159 0.841 26 H 0.141 0.859 27 H 0.163 0.837 28 H 0.248 0.752 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.225 -12.873 -1.326 17.130 hybrid contribution 0.350 2.847 0.178 2.874 sum 11.575 -10.026 -1.148 15.356 Atomic orbital electron populations 1.69856 1.07124 1.28024 1.50664 1.25774 0.95702 1.02399 0.93959 0.85567 0.78310 0.78692 0.78769 1.19624 1.20808 1.19839 1.21864 0.93016 0.92075 1.52211 0.93570 1.17528 0.88944 0.89232 0.89975 0.97672 1.59503 1.18258 1.55313 1.04244 1.20673 0.98195 0.97017 0.93462 1.20914 0.98460 0.96461 0.97495 1.21394 0.97344 0.97514 0.98786 1.19774 0.99125 0.98465 0.91503 1.20076 0.97449 0.96776 0.96951 1.18575 0.97757 0.95351 0.85118 1.84670 1.60961 1.47717 1.38089 1.20291 0.97578 1.00251 0.92475 1.21559 0.96032 0.96915 1.00650 1.21616 1.02213 0.97534 0.94034 1.20539 0.97257 0.94289 0.98806 0.92348 0.87135 0.84131 0.85930 0.83736 0.75248 0.91401 0.91401 0.89794 0.91665 0.92242 0.89104 0.89588 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.05 11.54 21.45 0.25 -51.80 16 2 C 0.02 1.19 5.38 84.65 0.46 1.64 16 3 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.55 -30.28 8.70 25.60 0.22 -30.06 16 8 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 9 C 0.25 13.51 2.60 43.42 0.11 13.62 16 10 H 0.01 0.33 7.85 -2.39 -0.02 0.31 16 11 N -0.84 -42.64 8.67 -174.96 -1.52 -44.15 16 12 C -0.09 -4.28 5.03 -19.83 -0.10 -4.38 16 13 C -0.11 -4.61 9.25 22.19 0.21 -4.41 16 14 C -0.13 -4.29 9.60 22.37 0.21 -4.08 16 15 C -0.09 -2.69 5.73 -19.87 -0.11 -2.81 16 16 C -0.11 -3.85 5.75 -19.76 -0.11 -3.96 16 17 C 0.08 3.25 6.63 22.60 0.15 3.40 16 18 O -0.50 -21.33 11.74 -92.48 -1.09 -22.42 16 19 C -0.07 -1.88 5.28 29.74 0.16 -1.72 16 20 C -0.11 -2.26 5.97 30.61 0.18 -2.08 16 21 C -0.12 -2.11 6.00 30.72 0.18 -1.92 16 22 C -0.07 -1.50 5.68 29.85 0.17 -1.33 16 23 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 24 H 0.32 14.98 7.30 -89.70 -0.65 14.33 16 25 H 0.34 18.59 7.08 -89.70 -0.63 17.96 16 26 H 0.12 4.80 6.27 -2.91 -0.02 4.78 16 27 H 0.14 3.64 8.05 -2.91 -0.02 3.61 16 28 H 0.39 14.30 9.06 -74.05 -0.67 13.63 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.84 7.74 -2.39 -0.02 1.82 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.28 8.09 -2.39 -0.02 1.27 16 33 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 Total: -1.00 -63.66 290.70 0.55 -63.11 By element: Atomic # 1 Polarization: 49.19 SS G_CDS: -0.85 Total: 48.34 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 1.73 Total: -38.08 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -1.27 Total: -95.96 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -1.09 Total: -22.42 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -63.66 0.55 -63.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.662 kcal (2) G-P(sol) polarization free energy of solvation -63.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds