Wall clock time and date at job start Mon Mar 30 2020 06:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86793 * 119.99996 * 2 1 4 4 H 1.48507 * 109.47061 * 240.00379 * 3 2 1 5 5 H 1.48506 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47449 * 119.99799 * 3 2 1 7 7 C 1.37873 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00694 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47493 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47111 * 304.99765 * 10 9 7 12 12 N 1.46898 * 109.47177 * 65.00161 * 10 9 7 13 13 C 1.50702 * 109.47003 * 184.99735 * 10 9 7 14 14 C 1.38258 * 119.94368 * 279.72645 * 13 10 9 15 15 C 1.38149 * 120.05450 * 179.72330 * 14 13 10 16 16 C 1.38742 * 119.94114 * 0.57300 * 15 14 13 17 17 O 1.35896 * 120.05017 * 179.67886 * 16 15 14 18 18 C 1.42911 * 116.99560 * 174.46844 * 17 16 15 19 19 C 1.52996 * 117.49897 * 224.79954 * 18 17 16 20 20 C 1.52995 * 60.00011 * 252.50703 * 19 18 17 21 21 C 1.38725 * 119.88583 * 359.70139 * 16 15 14 22 22 C 1.38143 * 119.94887 * 359.97438 * 21 16 15 23 23 H 0.96994 * 119.99894 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47081 * 59.99271 * 9 7 2 25 25 H 1.09006 * 109.46605 * 300.00553 * 9 7 2 26 26 H 1.00907 * 110.99558 * 296.04582 * 12 10 9 27 27 H 1.00896 * 111.00505 * 59.99665 * 12 10 9 28 28 H 1.07995 * 119.97537 * 359.97438 * 14 13 10 29 29 H 1.07999 * 120.03326 * 180.29088 * 15 14 13 30 30 H 1.09003 * 115.54729 * 10.50094 * 18 17 16 31 31 H 1.09000 * 117.49996 * 359.97438 * 19 18 17 32 32 H 1.08997 * 117.50286 * 145.01614 * 19 18 17 33 33 H 1.08996 * 117.50302 * 252.50907 * 20 19 18 34 34 H 1.09002 * 117.51805 * 107.47659 * 20 19 18 35 35 H 1.08005 * 120.02355 * 180.02562 * 21 16 15 36 36 H 1.08002 * 119.97086 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6621 0.0027 11 1 2.9295 -3.5560 -0.8392 12 7 3.0084 -3.6528 1.2580 13 6 1.4960 -4.9638 -0.1199 14 6 0.8995 -5.5243 0.9944 15 6 0.2071 -6.7146 0.8835 16 6 0.1207 -7.3536 -0.3450 17 8 -0.5544 -8.5279 -0.4553 18 6 -0.7068 -9.0675 -1.7698 19 6 -2.0867 -9.6018 -2.1584 20 6 -0.9366 -10.5751 -1.8923 21 6 0.7249 -6.7919 -1.4603 22 6 1.4104 -5.5981 -1.3455 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8920 26 1 3.5702 -2.8180 1.3334 27 1 2.3963 -3.7499 2.0541 28 1 0.9715 -5.0292 1.9515 29 1 -0.2627 -7.1497 1.7532 30 1 -0.1167 -8.5834 -2.5480 31 1 -2.8782 -9.5422 -1.4114 32 1 -2.4048 -9.4693 -3.1925 33 1 -0.4981 -11.0830 -2.7512 34 1 -0.9712 -11.1555 -0.9702 35 1 0.6586 -7.2872 -2.4178 36 1 1.8813 -5.1607 -2.2135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260293136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:20 Heat of formation + Delta-G solvation = -7.878344 kcal Electronic energy + Delta-G solvation = -17093.541825 eV Core-core repulsion = 14349.801664 eV Total energy + Delta-G solvation = -2743.740161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20177 -39.38343 -37.07101 -35.83025 -34.38162 -32.00692 -30.40230 -29.84556 -26.23567 -24.82547 -23.52944 -23.33881 -22.48055 -20.87167 -19.53660 -18.70960 -17.16080 -16.89733 -16.61020 -16.13833 -15.86932 -15.53937 -15.29546 -14.81993 -14.55950 -14.23834 -14.21250 -13.93282 -13.34271 -13.21346 -12.93337 -12.68634 -12.45110 -12.34272 -12.16944 -11.87004 -11.72960 -11.33498 -11.17745 -10.91095 -10.60267 -9.91457 -9.47959 -8.87114 -8.20950 -6.33797 0.43202 0.49858 1.40460 1.42505 1.50311 2.08804 2.39157 2.73248 2.95245 3.11709 3.61578 3.84645 3.90951 3.97350 4.01582 4.10337 4.23368 4.31186 4.49145 4.54846 4.72070 4.78651 4.83525 4.93280 4.97585 5.11362 5.18591 5.29963 5.36510 5.43937 5.51259 5.75508 5.81767 5.86169 6.16105 6.41407 6.50452 6.73481 6.82912 7.36281 8.89659 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043394 B = 0.004119 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.102838 B = 6796.790783 C = 7035.993782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.011 3.989 10 C 0.143 3.857 11 H 0.071 0.929 12 N -0.829 5.829 13 C -0.109 4.109 14 C -0.077 4.077 15 C -0.160 4.160 16 C 0.111 3.889 17 O -0.300 6.300 18 C -0.030 4.030 19 C -0.181 4.181 20 C -0.158 4.158 21 C -0.204 4.204 22 C -0.088 4.088 23 H 0.262 0.738 24 H -0.014 1.014 25 H -0.009 1.009 26 H 0.344 0.656 27 H 0.334 0.666 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 -17.684 -3.540 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.085 0.915 9 C -0.027 4.027 10 C 0.031 3.969 11 H 0.089 0.911 12 N -0.357 5.357 13 C -0.109 4.109 14 C -0.095 4.095 15 C -0.178 4.178 16 C 0.066 3.934 17 O -0.214 6.214 18 C -0.086 4.086 19 C -0.218 4.218 20 C -0.195 4.195 21 C -0.222 4.222 22 C -0.106 4.106 23 H 0.071 0.929 24 H 0.004 0.996 25 H 0.010 0.990 26 H 0.157 0.843 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.114 0.886 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.118 0.882 35 H 0.171 0.829 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.163 -18.357 -3.666 18.721 hybrid contribution -0.517 2.116 0.157 2.184 sum -0.680 -16.241 -3.509 16.630 Atomic orbital electron populations 1.70114 1.07928 1.27774 1.51406 1.25960 0.95636 1.03329 0.94671 0.85504 0.78178 0.78124 0.79242 1.19297 1.21350 1.18912 1.21556 0.93533 0.91739 1.50774 0.91541 1.19672 0.94608 0.93546 0.94911 1.20193 0.93250 0.90086 0.93371 0.91119 1.59272 1.27594 1.45395 1.03473 1.20025 0.99980 0.96684 0.94251 1.20819 0.95544 0.94461 0.98699 1.20530 1.04215 0.96493 0.96565 1.18989 0.93547 0.86141 0.94686 1.85954 1.70895 1.34582 1.29991 1.23426 1.02756 0.97489 0.84896 1.23547 0.91811 1.02608 1.03884 1.23462 1.01111 0.90318 1.04618 1.21345 1.03359 0.98356 0.99131 1.21007 0.98035 0.94411 0.97172 0.92882 0.99593 0.99036 0.84256 0.85412 0.85348 0.84218 0.84709 0.88628 0.85859 0.85242 0.88164 0.82869 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -29.38 8.55 25.60 0.22 -29.16 16 8 H 0.07 3.42 7.15 -2.91 -0.02 3.40 16 9 C 0.01 0.59 4.60 29.85 0.14 0.72 16 10 C 0.14 5.94 2.99 44.17 0.13 6.07 16 11 H 0.07 2.97 8.00 -2.39 -0.02 2.95 16 12 N -0.83 -31.11 9.02 -171.80 -1.55 -32.66 16 13 C -0.11 -4.10 4.96 -19.85 -0.10 -4.20 16 14 C -0.08 -2.69 9.29 22.25 0.21 -2.48 16 15 C -0.16 -5.08 9.99 22.37 0.22 -4.86 16 16 C 0.11 3.41 6.68 22.51 0.15 3.56 16 17 O -0.30 -8.35 10.39 -92.38 -0.96 -9.30 16 18 C -0.03 -0.60 6.21 30.59 0.19 -0.41 16 19 C -0.18 -2.89 10.48 30.59 0.32 -2.57 16 20 C -0.16 -2.30 10.48 30.59 0.32 -1.98 16 21 C -0.20 -5.94 9.19 22.36 0.21 -5.74 16 22 C -0.09 -2.94 9.66 22.25 0.22 -2.72 16 23 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 24 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 25 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 26 H 0.34 13.02 7.90 -89.69 -0.71 12.31 16 27 H 0.33 11.99 7.33 -89.70 -0.66 11.34 16 28 H 0.13 4.27 6.65 -2.91 -0.02 4.25 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.14 2.36 5.33 -2.39 -0.01 2.35 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.15 3.43 5.52 -2.91 -0.02 3.41 16 36 H 0.13 4.04 8.03 -2.91 -0.02 4.02 16 Total: -1.00 -65.15 303.21 2.22 -62.93 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.27 Total: 32.83 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 2.68 Total: -43.18 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -1.26 Total: -88.75 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.96 Total: -9.30 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.15 2.22 -62.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.050 kcal (2) G-P(sol) polarization free energy of solvation -65.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds