Wall clock time and date at job start Mon Mar 30 2020 06:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99979 * 2 1 4 4 H 1.48501 * 109.47005 * 240.00407 * 3 2 1 5 5 H 1.48499 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47252 * 120.00231 * 3 2 1 7 7 C 1.37880 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99989 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.46932 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46654 * 54.99812 * 10 9 7 12 12 N 1.46897 * 109.47244 * 294.99814 * 10 9 7 13 13 C 1.50696 * 109.47047 * 174.99759 * 10 9 7 14 14 C 1.38265 * 119.94521 * 79.72543 * 13 10 9 15 15 C 1.38145 * 120.05758 * 179.72116 * 14 13 10 16 16 C 1.38730 * 119.94098 * 0.57511 * 15 14 13 17 17 O 1.35903 * 120.05681 * 179.67728 * 16 15 14 18 18 C 1.42897 * 117.00113 * 174.49941 * 17 16 15 19 19 C 1.53003 * 117.49899 * 224.90167 * 18 17 16 20 20 C 1.53004 * 117.49795 * 156.24491 * 18 17 16 21 21 C 1.38729 * 119.89239 * 359.70492 * 16 15 14 22 22 C 1.38147 * 119.94191 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47493 * 60.00143 * 9 7 2 25 25 H 1.09000 * 109.47178 * 299.99705 * 9 7 2 26 26 H 1.00902 * 110.99535 * 300.00226 * 12 10 9 27 27 H 1.00902 * 111.00214 * 63.94770 * 12 10 9 28 28 H 1.07997 * 119.97107 * 359.97438 * 14 13 10 29 29 H 1.07995 * 120.02985 * 180.24740 * 15 14 13 30 30 H 1.08993 * 115.55037 * 10.57666 * 18 17 16 31 31 H 1.08997 * 117.49798 * 0.02562 * 19 18 17 32 32 H 1.08999 * 117.49547 * 145.01942 * 19 18 17 33 33 H 1.09002 * 117.49614 * 214.98152 * 20 18 17 34 34 H 1.08998 * 117.49595 * 359.97438 * 20 18 17 35 35 H 1.08001 * 120.03319 * 180.02562 * 21 16 15 36 36 H 1.07997 * 119.97186 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0027 11 1 2.9295 -3.5559 0.8392 12 7 3.0084 -3.6528 -1.2579 13 6 1.4960 -4.9637 0.1200 14 6 0.8898 -5.5186 -0.9919 15 6 0.2072 -6.7147 -0.8833 16 6 0.1200 -7.3531 0.3453 17 8 -0.5566 -8.5265 0.4562 18 6 -0.5039 -9.1887 1.7214 19 6 -0.2517 -10.6978 1.7190 20 6 -1.6411 -10.1542 2.0613 21 6 0.7242 -6.7914 1.4607 22 6 1.4113 -5.5985 1.3454 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6241 -2.5575 0.8880 26 1 2.3961 -3.7499 -2.0540 27 1 3.5701 -2.8180 -1.3336 28 1 0.9535 -5.0186 -1.9471 29 1 -0.2628 -7.1497 -1.7529 30 1 -0.0755 -8.6081 2.5384 31 1 -0.1256 -11.1854 0.7524 32 1 0.3423 -11.1100 2.5346 33 1 -1.9606 -10.2090 3.1020 34 1 -2.4296 -10.2839 1.3200 35 1 0.6581 -7.2866 2.4182 36 1 1.8821 -5.1610 2.2133 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260293142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:24 Heat of formation + Delta-G solvation = 10.591103 kcal Electronic energy + Delta-G solvation = -17085.820659 eV Core-core repulsion = 14342.881394 eV Total energy + Delta-G solvation = -2742.939266 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04918 -38.17733 -35.82934 -34.51038 -32.39484 -30.73377 -29.05713 -27.89898 -24.55968 -23.54521 -22.68510 -22.03167 -21.22005 -19.44253 -18.45444 -16.73871 -15.97829 -15.42511 -15.11434 -14.74640 -14.59777 -14.40162 -14.10321 -13.44717 -13.02606 -12.85136 -12.59633 -12.14342 -12.03400 -11.83593 -11.74809 -11.20649 -10.96244 -10.84024 -10.60373 -10.48123 -10.20398 -10.08364 -9.78494 -9.17305 -8.64185 -8.46164 -7.94962 -7.47346 -6.07756 -4.12649 1.70753 1.81028 3.06680 3.28014 3.33262 3.35037 3.55849 4.16573 4.39079 4.46930 4.67371 4.82955 5.03062 5.14919 5.26266 5.31964 5.35189 5.40529 5.59797 5.70656 5.79554 5.83406 5.87373 6.04881 6.23127 6.44797 6.60550 6.72093 6.75021 7.11044 7.14302 7.47529 7.59205 7.64443 7.86229 8.07137 8.22309 8.34438 8.94135 9.52444 11.02738 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.046895 B = 0.004051 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.933528 B = 6909.916615 C = 7085.654598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.001 3.999 10 C 0.127 3.873 11 H 0.075 0.925 12 N -0.840 5.840 13 C -0.079 4.079 14 C -0.069 4.069 15 C -0.150 4.150 16 C 0.109 3.891 17 O -0.288 6.288 18 C 0.005 3.995 19 C -0.187 4.187 20 C -0.174 4.174 21 C -0.207 4.207 22 C -0.080 4.080 23 H 0.262 0.738 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.328 0.672 27 H 0.346 0.654 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 -16.924 2.662 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.038 4.038 10 C 0.016 3.984 11 H 0.093 0.907 12 N -0.369 5.369 13 C -0.080 4.080 14 C -0.087 4.087 15 C -0.169 4.169 16 C 0.065 3.935 17 O -0.202 6.202 18 C -0.052 4.052 19 C -0.224 4.224 20 C -0.211 4.211 21 C -0.225 4.225 22 C -0.098 4.098 23 H 0.072 0.928 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.142 0.858 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.282 -17.555 2.800 17.779 hybrid contribution -0.207 1.899 0.038 1.911 sum -0.489 -15.656 2.837 15.919 Atomic orbital electron populations 1.69960 1.06111 1.26863 1.50005 1.25020 0.94820 0.99294 0.95059 0.86644 0.79560 0.83050 0.78666 1.20176 1.21307 1.20202 1.21134 0.92864 0.90868 1.51674 0.92559 1.19801 0.94441 0.91668 0.97863 1.20496 0.94442 0.90615 0.92827 0.90722 1.59276 1.28002 1.45766 1.03826 1.20093 0.98229 0.96815 0.92878 1.20741 0.95280 0.93814 0.98870 1.20326 1.04283 0.97044 0.95238 1.18841 0.94332 0.85844 0.94500 1.85974 1.68081 1.33714 1.32435 1.23002 1.04539 0.90157 0.87471 1.23453 0.99181 0.95926 1.03830 1.23347 0.92765 1.02123 1.02900 1.21071 1.04684 0.99069 0.97695 1.20810 0.97767 0.93774 0.97478 0.92837 0.96451 0.96235 0.86031 0.84097 0.85590 0.85811 0.85724 0.87981 0.87909 0.87705 0.87918 0.85835 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.24 8.55 -34.44 -0.29 -14.54 16 8 H 0.06 1.46 7.14 -52.49 -0.38 1.08 16 9 C 0.00 0.02 4.60 -27.88 -0.13 -0.11 16 10 C 0.13 2.61 2.99 -68.86 -0.21 2.41 16 11 H 0.07 1.56 8.00 -51.93 -0.42 1.14 16 12 N -0.84 -15.77 9.02 -5.65 -0.05 -15.82 16 13 C -0.08 -1.48 4.96 -104.60 -0.52 -2.00 16 14 C -0.07 -1.19 9.28 -39.61 -0.37 -1.56 16 15 C -0.15 -2.43 9.99 -39.43 -0.39 -2.82 16 16 C 0.11 1.73 6.68 -39.22 -0.26 1.47 16 17 O -0.29 -4.21 10.39 -19.44 -0.20 -4.42 16 18 C 0.01 0.06 6.21 -26.73 -0.17 -0.11 16 19 C -0.19 -1.65 10.48 -26.69 -0.28 -1.93 16 20 C -0.17 -1.54 10.48 -26.69 -0.28 -1.82 16 21 C -0.21 -3.16 9.19 -39.43 -0.36 -3.52 16 22 C -0.08 -1.35 9.66 -39.60 -0.38 -1.73 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.33 5.86 7.35 -39.29 -0.29 5.57 16 27 H 0.35 6.59 7.90 -39.29 -0.31 6.28 16 28 H 0.13 2.06 6.67 -52.49 -0.35 1.71 16 29 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.13 1.26 5.33 -51.93 -0.28 0.98 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.12 1.53 5.52 -52.49 -0.29 1.24 16 36 H 0.12 1.90 8.03 -52.49 -0.42 1.48 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -30.18 303.24 -8.53 -38.71 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.82 Total: 11.11 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -3.74 Total: -24.68 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.69 Total: -41.45 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.20 Total: -4.42 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.18 -8.53 -38.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.302 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds