Wall clock time and date at job start Mon Mar 30 2020 06:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99979 * 2 1 4 4 H 1.48501 * 109.47005 * 240.00407 * 3 2 1 5 5 H 1.48499 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47252 * 120.00231 * 3 2 1 7 7 C 1.37880 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99989 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.46932 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46654 * 54.99812 * 10 9 7 12 12 N 1.46897 * 109.47244 * 294.99814 * 10 9 7 13 13 C 1.50696 * 109.47047 * 174.99759 * 10 9 7 14 14 C 1.38265 * 119.94521 * 79.72543 * 13 10 9 15 15 C 1.38145 * 120.05758 * 179.72116 * 14 13 10 16 16 C 1.38730 * 119.94098 * 0.57511 * 15 14 13 17 17 O 1.35903 * 120.05681 * 179.67728 * 16 15 14 18 18 C 1.42897 * 117.00113 * 174.49941 * 17 16 15 19 19 C 1.53003 * 117.49899 * 224.90167 * 18 17 16 20 20 C 1.53004 * 117.49795 * 156.24491 * 18 17 16 21 21 C 1.38729 * 119.89239 * 359.70492 * 16 15 14 22 22 C 1.38147 * 119.94191 * 359.97438 * 21 16 15 23 23 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47493 * 60.00143 * 9 7 2 25 25 H 1.09000 * 109.47178 * 299.99705 * 9 7 2 26 26 H 1.00902 * 110.99535 * 300.00226 * 12 10 9 27 27 H 1.00902 * 111.00214 * 63.94770 * 12 10 9 28 28 H 1.07997 * 119.97107 * 359.97438 * 14 13 10 29 29 H 1.07995 * 120.02985 * 180.24740 * 15 14 13 30 30 H 1.08993 * 115.55037 * 10.57666 * 18 17 16 31 31 H 1.08997 * 117.49798 * 0.02562 * 19 18 17 32 32 H 1.08999 * 117.49547 * 145.01942 * 19 18 17 33 33 H 1.09002 * 117.49614 * 214.98152 * 20 18 17 34 34 H 1.08998 * 117.49595 * 359.97438 * 20 18 17 35 35 H 1.08001 * 120.03319 * 180.02562 * 21 16 15 36 36 H 1.07997 * 119.97186 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0027 11 1 2.9295 -3.5559 0.8392 12 7 3.0084 -3.6528 -1.2579 13 6 1.4960 -4.9637 0.1200 14 6 0.8898 -5.5186 -0.9919 15 6 0.2072 -6.7147 -0.8833 16 6 0.1200 -7.3531 0.3453 17 8 -0.5566 -8.5265 0.4562 18 6 -0.5039 -9.1887 1.7214 19 6 -0.2517 -10.6978 1.7190 20 6 -1.6411 -10.1542 2.0613 21 6 0.7242 -6.7914 1.4607 22 6 1.4113 -5.5985 1.3454 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6241 -2.5575 0.8880 26 1 2.3961 -3.7499 -2.0540 27 1 3.5701 -2.8180 -1.3336 28 1 0.9535 -5.0186 -1.9471 29 1 -0.2628 -7.1497 -1.7529 30 1 -0.0755 -8.6081 2.5384 31 1 -0.1256 -11.1854 0.7524 32 1 0.3423 -11.1100 2.5346 33 1 -1.9606 -10.2090 3.1020 34 1 -2.4296 -10.2839 1.3200 35 1 0.6581 -7.2866 2.4182 36 1 1.8821 -5.1610 2.2133 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260293142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:23 Heat of formation + Delta-G solvation = -7.939061 kcal Electronic energy + Delta-G solvation = -17086.624188 eV Core-core repulsion = 14342.881394 eV Total energy + Delta-G solvation = -2743.742794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20144 -39.38200 -37.06747 -35.82617 -34.38242 -32.00663 -30.40426 -29.84454 -26.23369 -24.82556 -23.52836 -23.33914 -22.48167 -20.87076 -19.53625 -18.70865 -17.16023 -16.89781 -16.60837 -16.15534 -15.82274 -15.57835 -15.27768 -14.81482 -14.56937 -14.24143 -14.21209 -13.92920 -13.36951 -13.19691 -12.91036 -12.68781 -12.44949 -12.34484 -12.17273 -11.87603 -11.73134 -11.32929 -11.18202 -10.90627 -10.60293 -9.91466 -9.47758 -8.87198 -8.20941 -6.33809 0.43161 0.49895 1.40446 1.42503 1.50315 2.09124 2.39126 2.73247 2.94878 3.11719 3.61776 3.84840 3.91023 3.97817 4.01281 4.10493 4.23400 4.31320 4.49202 4.54909 4.72292 4.78631 4.83589 4.93276 4.97761 5.11367 5.18840 5.30006 5.36522 5.43933 5.51269 5.75485 5.81774 5.86208 6.16099 6.41383 6.50554 6.73493 6.82924 7.36265 8.89658 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.046895 B = 0.004051 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.933528 B = 6909.916615 C = 7085.654598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.011 3.989 10 C 0.143 3.857 11 H 0.071 0.929 12 N -0.829 5.829 13 C -0.109 4.109 14 C -0.077 4.077 15 C -0.159 4.159 16 C 0.111 3.889 17 O -0.301 6.301 18 C -0.030 4.030 19 C -0.175 4.175 20 C -0.164 4.164 21 C -0.204 4.204 22 C -0.088 4.088 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.014 1.014 26 H 0.334 0.666 27 H 0.344 0.656 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -18.066 3.385 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.085 0.915 9 C -0.027 4.027 10 C 0.031 3.969 11 H 0.089 0.911 12 N -0.357 5.357 13 C -0.109 4.109 14 C -0.095 4.095 15 C -0.178 4.178 16 C 0.067 3.933 17 O -0.215 6.215 18 C -0.086 4.086 19 C -0.212 4.212 20 C -0.201 4.201 21 C -0.222 4.222 22 C -0.106 4.106 23 H 0.071 0.929 24 H 0.010 0.990 25 H 0.004 0.996 26 H 0.146 0.854 27 H 0.157 0.843 28 H 0.146 0.854 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.117 0.883 35 H 0.171 0.829 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.455 -18.724 3.518 19.057 hybrid contribution -0.504 2.107 -0.160 2.172 sum -0.049 -16.617 3.358 16.953 Atomic orbital electron populations 1.70109 1.07937 1.27782 1.51393 1.25960 0.95631 1.03331 0.94668 0.85504 0.78180 0.78125 0.79245 1.18908 1.21354 1.19294 1.21556 0.93534 0.91735 1.50790 0.91534 1.19674 0.94609 0.93549 0.94911 1.20194 0.93257 0.90076 0.93373 0.91118 1.59273 1.27591 1.45388 1.03472 1.20024 0.99902 0.96701 0.94301 1.20820 0.95557 0.94430 0.98726 1.20523 1.04202 0.96732 0.96337 1.18989 0.93646 0.86237 0.94475 1.85954 1.67725 1.33120 1.34655 1.23423 1.07403 0.91316 0.86469 1.23557 0.99415 0.93754 1.04467 1.23479 0.92438 1.00062 1.04119 1.21347 1.03537 0.98345 0.98968 1.21009 0.98041 0.94415 0.97158 0.92876 0.99029 0.99599 0.85419 0.84260 0.85372 0.84220 0.84772 0.88403 0.85649 0.85430 0.88338 0.82870 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -29.40 8.55 25.60 0.22 -29.18 16 8 H 0.07 3.42 7.14 -2.91 -0.02 3.40 16 9 C 0.01 0.58 4.60 29.85 0.14 0.72 16 10 C 0.14 5.94 2.99 44.17 0.13 6.07 16 11 H 0.07 2.97 8.00 -2.39 -0.02 2.95 16 12 N -0.83 -31.11 9.02 -171.80 -1.55 -32.66 16 13 C -0.11 -4.09 4.96 -19.85 -0.10 -4.19 16 14 C -0.08 -2.70 9.28 22.25 0.21 -2.49 16 15 C -0.16 -5.08 9.99 22.37 0.22 -4.85 16 16 C 0.11 3.41 6.68 22.51 0.15 3.56 16 17 O -0.30 -8.36 10.39 -92.46 -0.96 -9.32 16 18 C -0.03 -0.61 6.21 30.60 0.19 -0.42 16 19 C -0.17 -2.61 10.48 30.62 0.32 -2.29 16 20 C -0.16 -2.46 10.48 30.62 0.32 -2.14 16 21 C -0.20 -5.95 9.19 22.37 0.21 -5.74 16 22 C -0.09 -2.94 9.66 22.26 0.22 -2.72 16 23 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H 0.33 12.00 7.35 -89.69 -0.66 11.34 16 27 H 0.34 13.02 7.90 -89.69 -0.71 12.31 16 28 H 0.13 4.27 6.67 -2.91 -0.02 4.25 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.14 2.35 5.33 -2.39 -0.01 2.34 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.15 3.43 5.52 -2.91 -0.02 3.41 16 36 H 0.13 4.04 8.03 -2.91 -0.02 4.02 16 Total: -1.00 -65.19 303.24 2.22 -62.98 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -0.27 Total: 32.72 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 2.68 Total: -43.08 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.27 Total: -88.78 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.96 Total: -9.32 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.19 2.22 -62.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.037 kcal (2) G-P(sol) polarization free energy of solvation -65.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds