Wall clock time and date at job start Mon Mar 30 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00305 * 2 1 4 4 H 1.48503 * 109.46679 * 270.00031 * 3 2 1 5 5 H 1.48504 * 109.47037 * 29.99588 * 3 2 1 6 6 H 1.48491 * 109.47293 * 150.00091 * 3 2 1 7 7 C 1.37879 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00565 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99566 * 0.02562 * 7 2 1 10 10 H 1.09011 * 109.53762 * 299.90056 * 9 7 2 11 11 C 1.53123 * 109.50632 * 179.80372 * 9 7 2 12 12 C 1.53114 * 109.16198 * 182.40528 * 11 9 7 13 13 C 1.53032 * 109.28141 * 57.65126 * 12 11 9 14 14 H 1.09008 * 109.45233 * 60.83074 * 13 12 11 15 15 C 1.50696 * 109.46447 * 180.80277 * 13 12 11 16 16 C 1.38274 * 119.94446 * 79.78350 * 15 13 12 17 17 C 1.38138 * 120.05431 * 179.72928 * 16 15 13 18 18 C 1.38728 * 119.94664 * 0.51666 * 17 16 15 19 19 O 1.35900 * 120.05609 * 179.72853 * 18 17 16 20 20 C 1.38731 * 119.88871 * 359.75821 * 18 17 16 21 21 C 1.38142 * 119.94214 * 359.97438 * 20 18 17 22 22 N 1.46844 * 109.52527 * 300.82107 * 13 12 11 23 23 C 1.46846 * 111.19783 * 61.73901 * 22 13 12 24 24 H 0.97003 * 120.00249 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.52219 * 62.49698 * 11 9 7 26 26 H 1.08998 * 109.51778 * 302.31203 * 11 9 7 27 27 H 1.09000 * 109.50493 * 297.71120 * 12 11 9 28 28 H 1.08996 * 109.50191 * 177.59676 * 12 11 9 29 29 H 1.08001 * 119.96902 * 359.97438 * 16 15 13 30 30 H 1.08000 * 120.02551 * 180.25015 * 17 16 15 31 31 H 0.96705 * 113.99955 * 270.02464 * 19 18 17 32 32 H 1.08007 * 120.02928 * 179.97438 * 20 18 17 33 33 H 1.08004 * 119.96818 * 180.02562 * 21 20 18 34 34 H 1.00904 * 110.99961 * 297.64368 * 22 13 12 35 35 H 1.09008 * 109.46456 * 58.27625 * 23 22 13 36 36 H 1.09003 * 109.46474 * 178.24130 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6249 -2.5586 0.8909 11 6 2.2453 -3.6636 -0.0038 12 6 1.4726 -4.9841 -0.0644 13 6 0.5865 -4.9941 -1.3121 14 1 1.2110 -4.9094 -2.2015 15 6 -0.1909 -6.2840 -1.3655 16 6 -1.3276 -6.4372 -0.5932 17 6 -2.0451 -7.6165 -0.6446 18 6 -1.6183 -8.6517 -1.4637 19 8 -2.3194 -9.8149 -1.5118 20 6 -0.4743 -8.4976 -2.2333 21 6 0.2366 -7.3142 -2.1825 22 7 -0.3472 -3.8619 -1.2601 23 6 0.3713 -2.5813 -1.2490 24 1 -0.4851 0.8400 0.0004 25 1 2.8450 -3.6339 0.9060 26 1 2.8972 -3.5826 -0.8736 27 1 0.8500 -5.0826 0.8248 28 1 2.1759 -5.8154 -0.1108 29 1 -1.6570 -5.6327 0.0476 30 1 -2.9351 -7.7342 -0.0443 31 1 -2.0337 -10.4734 -0.8639 32 1 -0.1398 -9.3022 -2.8715 33 1 1.1270 -7.1937 -2.7817 34 1 -0.9635 -3.9377 -0.4648 35 1 0.9967 -2.5079 -2.1388 36 1 -0.3473 -1.7617 -1.2418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260304791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:49 Heat of formation + Delta-G solvation = -31.931160 kcal Electronic energy + Delta-G solvation = -17649.035308 eV Core-core repulsion = 14904.252138 eV Total energy + Delta-G solvation = -2744.783170 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86312 -38.16583 -36.34787 -33.21776 -31.10458 -30.91771 -30.53448 -28.07078 -24.84048 -23.22766 -22.39472 -22.09092 -20.48701 -19.20760 -18.39416 -16.36731 -16.14201 -15.58339 -15.22238 -14.65389 -14.31649 -13.92621 -13.65346 -13.25398 -13.07835 -12.75325 -12.50923 -12.04742 -11.89854 -11.76233 -11.17278 -10.97462 -10.75508 -10.48770 -10.46113 -10.31726 -10.17298 -10.05213 -9.25750 -9.05779 -8.88933 -8.46069 -8.31850 -7.35063 -6.04099 -4.08936 1.33279 1.45371 3.28352 3.35482 3.38273 3.71620 4.22873 4.40203 4.87400 5.00811 5.03960 5.24098 5.29356 5.46541 5.56061 5.67390 5.73288 5.90698 6.01148 6.08551 6.22209 6.33001 6.44046 6.48767 6.59445 6.65036 6.81553 6.90468 6.91880 6.99000 7.25688 7.55746 7.62237 7.78895 7.92300 8.02165 8.26720 8.46070 8.94253 9.55441 11.02327 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.058627 B = 0.004542 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.484716 B = 6163.840455 C = 6371.680023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.017 3.983 10 H 0.024 0.976 11 C -0.110 4.110 12 C -0.143 4.143 13 C 0.125 3.875 14 H 0.082 0.918 15 C -0.063 4.063 16 C -0.091 4.091 17 C -0.143 4.143 18 C 0.087 3.913 19 O -0.502 6.502 20 C -0.145 4.145 21 C -0.102 4.102 22 N -0.686 5.686 23 C 0.061 3.939 24 H 0.261 0.739 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.385 0.615 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.330 0.670 35 H 0.046 0.954 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 -15.252 -1.171 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.003 4.003 10 H 0.042 0.958 11 C -0.147 4.147 12 C -0.182 4.182 13 C 0.014 3.986 14 H 0.100 0.900 15 C -0.063 4.063 16 C -0.109 4.109 17 C -0.161 4.161 18 C 0.043 3.957 19 O -0.312 6.312 20 C -0.163 4.163 21 C -0.121 4.121 22 N -0.315 5.315 23 C -0.067 4.067 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.240 0.760 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.064 0.936 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.852 -14.810 -2.326 15.105 hybrid contribution 1.075 0.661 1.309 1.818 sum -0.777 -14.149 -1.017 14.206 Atomic orbital electron populations 1.69836 1.05841 1.26587 1.50687 1.24974 0.94878 0.99105 0.94963 0.86598 0.79834 0.83471 0.78127 1.20641 1.21235 1.20020 1.21130 0.92886 0.90466 1.50742 0.92742 1.19311 0.93607 0.92231 0.95186 0.95826 1.21669 0.98622 0.94140 1.00306 1.22290 0.99094 0.98845 0.97971 1.20476 0.92293 0.87869 0.97959 0.90022 1.20081 0.95421 0.95505 0.95308 1.20893 0.94495 0.96658 0.98854 1.21369 1.00773 0.94231 0.99763 1.18432 0.92163 0.87207 0.97943 1.84831 1.60178 1.24866 1.61310 1.21314 0.95048 0.98839 1.01138 1.20902 0.99797 0.92631 0.98764 1.61043 1.20266 1.02636 1.47549 1.22294 0.97974 0.88786 0.97666 0.92883 0.93398 0.93228 0.92634 0.93105 0.85547 0.85750 0.76039 0.85845 0.85752 0.85281 0.93552 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.85 11.33 55.43 0.63 -24.22 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.51 -13.83 8.56 -34.44 -0.29 -14.12 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.40 2.25 -91.69 -0.21 0.19 16 10 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 11 C -0.11 -2.23 5.23 -26.61 -0.14 -2.37 16 12 C -0.14 -2.44 5.33 -26.66 -0.14 -2.58 16 13 C 0.12 2.11 2.66 -68.88 -0.18 1.93 16 14 H 0.08 1.41 8.00 -51.92 -0.42 1.00 16 15 C -0.06 -0.94 4.96 -104.60 -0.52 -1.46 16 16 C -0.09 -1.29 9.27 -39.60 -0.37 -1.66 16 17 C -0.14 -1.85 9.99 -39.44 -0.39 -2.24 16 18 C 0.09 1.09 6.70 -39.22 -0.26 0.83 16 19 O -0.50 -5.50 13.50 -19.43 -0.26 -5.76 16 20 C -0.14 -1.79 9.99 -39.43 -0.39 -2.18 16 21 C -0.10 -1.36 9.66 -39.61 -0.38 -1.74 16 22 N -0.69 -13.35 6.36 -107.99 -0.69 -14.03 16 23 C 0.06 1.41 5.60 -3.84 -0.02 1.38 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.13 1.76 6.63 -52.49 -0.35 1.41 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.38 2.26 9.06 45.56 0.41 2.67 16 32 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.12 1.45 8.03 -52.48 -0.42 1.03 16 34 H 0.33 6.23 7.06 -39.29 -0.28 5.96 16 35 H 0.05 1.10 8.14 -51.92 -0.42 0.67 16 36 H 0.11 2.77 6.10 -51.93 -0.32 2.45 16 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -29.00 293.46 -8.61 -37.61 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.29 Total: 8.43 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -3.40 Total: -22.43 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.06 Total: -38.25 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.26 Total: -5.76 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.00 -8.61 -37.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.677 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds