Wall clock time and date at job start Mon Mar 30 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00305 * 2 1 4 4 H 1.48503 * 109.46679 * 270.00031 * 3 2 1 5 5 H 1.48504 * 109.47037 * 29.99588 * 3 2 1 6 6 H 1.48491 * 109.47293 * 150.00091 * 3 2 1 7 7 C 1.37879 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00565 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99566 * 0.02562 * 7 2 1 10 10 H 1.09011 * 109.53762 * 299.90056 * 9 7 2 11 11 C 1.53123 * 109.50632 * 179.80372 * 9 7 2 12 12 C 1.53114 * 109.16198 * 182.40528 * 11 9 7 13 13 C 1.53032 * 109.28141 * 57.65126 * 12 11 9 14 14 H 1.09008 * 109.45233 * 60.83074 * 13 12 11 15 15 C 1.50696 * 109.46447 * 180.80277 * 13 12 11 16 16 C 1.38274 * 119.94446 * 79.78350 * 15 13 12 17 17 C 1.38138 * 120.05431 * 179.72928 * 16 15 13 18 18 C 1.38728 * 119.94664 * 0.51666 * 17 16 15 19 19 O 1.35900 * 120.05609 * 179.72853 * 18 17 16 20 20 C 1.38731 * 119.88871 * 359.75821 * 18 17 16 21 21 C 1.38142 * 119.94214 * 359.97438 * 20 18 17 22 22 N 1.46844 * 109.52527 * 300.82107 * 13 12 11 23 23 C 1.46846 * 111.19783 * 61.73901 * 22 13 12 24 24 H 0.97003 * 120.00249 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.52219 * 62.49698 * 11 9 7 26 26 H 1.08998 * 109.51778 * 302.31203 * 11 9 7 27 27 H 1.09000 * 109.50493 * 297.71120 * 12 11 9 28 28 H 1.08996 * 109.50191 * 177.59676 * 12 11 9 29 29 H 1.08001 * 119.96902 * 359.97438 * 16 15 13 30 30 H 1.08000 * 120.02551 * 180.25015 * 17 16 15 31 31 H 0.96705 * 113.99955 * 270.02464 * 19 18 17 32 32 H 1.08007 * 120.02928 * 179.97438 * 20 18 17 33 33 H 1.08004 * 119.96818 * 180.02562 * 21 20 18 34 34 H 1.00904 * 110.99961 * 297.64368 * 22 13 12 35 35 H 1.09008 * 109.46456 * 58.27625 * 23 22 13 36 36 H 1.09003 * 109.46474 * 178.24130 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6249 -2.5586 0.8909 11 6 2.2453 -3.6636 -0.0038 12 6 1.4726 -4.9841 -0.0644 13 6 0.5865 -4.9941 -1.3121 14 1 1.2110 -4.9094 -2.2015 15 6 -0.1909 -6.2840 -1.3655 16 6 -1.3276 -6.4372 -0.5932 17 6 -2.0451 -7.6165 -0.6446 18 6 -1.6183 -8.6517 -1.4637 19 8 -2.3194 -9.8149 -1.5118 20 6 -0.4743 -8.4976 -2.2333 21 6 0.2366 -7.3142 -2.1825 22 7 -0.3472 -3.8619 -1.2601 23 6 0.3713 -2.5813 -1.2490 24 1 -0.4851 0.8400 0.0004 25 1 2.8450 -3.6339 0.9060 26 1 2.8972 -3.5826 -0.8736 27 1 0.8500 -5.0826 0.8248 28 1 2.1759 -5.8154 -0.1108 29 1 -1.6570 -5.6327 0.0476 30 1 -2.9351 -7.7342 -0.0443 31 1 -2.0337 -10.4734 -0.8639 32 1 -0.1398 -9.3022 -2.8715 33 1 1.1270 -7.1937 -2.7817 34 1 -0.9635 -3.9377 -0.4648 35 1 0.9967 -2.5079 -2.1388 36 1 -0.3473 -1.7617 -1.2418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260304791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:49 Heat of formation + Delta-G solvation = -51.238852 kcal Electronic energy + Delta-G solvation = -17649.872552 eV Core-core repulsion = 14904.252138 eV Total energy + Delta-G solvation = -2745.620414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96323 -39.51073 -37.46854 -35.06097 -32.70667 -32.21956 -31.80899 -29.50622 -26.63294 -24.62221 -23.66773 -23.50565 -21.80416 -20.88154 -19.29552 -18.40588 -17.37010 -16.68972 -16.57930 -16.16971 -15.71367 -15.27661 -15.08491 -14.75138 -14.28573 -14.23513 -14.00444 -13.57830 -13.24412 -12.92658 -12.84536 -12.60567 -12.45549 -12.15420 -12.04649 -11.94439 -11.77183 -11.32814 -11.17204 -10.89920 -10.45777 -9.87959 -9.46011 -8.95649 -8.11041 -6.23295 0.32579 0.46236 1.41008 1.42227 1.51769 2.42515 2.72284 3.16117 3.36147 3.56654 3.84903 3.95747 4.10984 4.19062 4.27760 4.50363 4.51251 4.65127 4.73707 4.76735 4.85055 4.97019 5.05157 5.13208 5.20366 5.26420 5.38307 5.45371 5.50641 5.57783 5.70549 5.88149 5.94473 5.99238 6.17813 6.48349 6.62560 6.89718 6.91724 7.44097 8.93609 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.058627 B = 0.004542 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.484716 B = 6163.840455 C = 6371.680023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.015 3.985 10 H -0.006 1.006 11 C -0.104 4.104 12 C -0.132 4.132 13 C 0.129 3.871 14 H 0.080 0.920 15 C -0.081 4.081 16 C -0.101 4.101 17 C -0.150 4.150 18 C 0.092 3.908 19 O -0.509 6.509 20 C -0.146 4.146 21 C -0.102 4.102 22 N -0.684 5.684 23 C 0.078 3.922 24 H 0.261 0.739 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.409 0.591 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.332 0.668 35 H 0.036 0.964 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -17.014 -1.616 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.068 0.932 9 C -0.005 4.005 10 H 0.012 0.988 11 C -0.142 4.142 12 C -0.171 4.171 13 C 0.019 3.981 14 H 0.098 0.902 15 C -0.082 4.082 16 C -0.119 4.119 17 C -0.168 4.168 18 C 0.048 3.952 19 O -0.322 6.322 20 C -0.164 4.164 21 C -0.121 4.121 22 N -0.313 5.313 23 C -0.051 4.051 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.139 0.861 30 H 0.156 0.844 31 H 0.268 0.732 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.054 0.946 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.407 -16.605 -2.758 16.891 hybrid contribution 0.886 1.100 1.454 2.027 sum -0.521 -15.505 -1.303 15.569 Atomic orbital electron populations 1.69974 1.07052 1.27241 1.51132 1.25717 0.95678 1.02297 0.94644 0.85629 0.78689 0.79530 0.78241 1.20097 1.20927 1.19496 1.21503 0.92970 0.92079 1.50920 0.93158 1.19266 0.94011 0.92973 0.94216 0.98832 1.21556 0.97968 0.94482 1.00193 1.22181 0.99229 0.97663 0.98056 1.20438 0.92023 0.87935 0.97679 0.90225 1.19886 0.96101 0.94979 0.97210 1.20919 0.94758 0.97214 0.99046 1.21529 1.01187 0.93879 1.00219 1.18546 0.91888 0.87640 0.97128 1.84770 1.60208 1.24839 1.62413 1.21560 0.94706 0.99029 1.01091 1.21083 1.00383 0.92377 0.98221 1.60949 1.20582 1.02073 1.47710 1.21864 0.96818 0.89803 0.96613 0.92932 0.93576 0.93212 0.92822 0.90416 0.86145 0.84352 0.73241 0.83535 0.84180 0.85021 0.94565 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.31 11.33 21.45 0.24 -52.07 16 2 C 0.02 0.86 5.30 84.66 0.45 1.31 16 3 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.54 -29.46 8.56 25.60 0.22 -29.24 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 9 C 0.02 0.76 2.25 -11.49 -0.03 0.73 16 10 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 11 C -0.10 -4.24 5.23 30.67 0.16 -4.08 16 12 C -0.13 -4.38 5.33 30.64 0.16 -4.22 16 13 C 0.13 4.28 2.66 44.19 0.12 4.40 16 14 H 0.08 2.67 8.00 -2.38 -0.02 2.65 16 15 C -0.08 -2.31 4.96 -19.85 -0.10 -2.41 16 16 C -0.10 -2.76 9.27 22.25 0.21 -2.56 16 17 C -0.15 -3.58 9.99 22.36 0.22 -3.36 16 18 C 0.09 2.06 6.70 22.51 0.15 2.21 16 19 O -0.51 -9.47 13.50 -92.43 -1.25 -10.72 16 20 C -0.15 -3.13 9.99 22.36 0.22 -2.90 16 21 C -0.10 -2.45 9.66 22.25 0.21 -2.24 16 22 N -0.68 -26.96 6.36 -495.57 -3.15 -30.11 16 23 C 0.08 3.73 5.60 86.33 0.48 4.21 16 24 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.12 3.35 6.63 -2.91 -0.02 3.33 16 30 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.41 3.36 9.06 -74.05 -0.67 2.68 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.14 2.85 8.03 -2.91 -0.02 2.83 16 34 H 0.33 12.85 7.06 -89.69 -0.63 12.22 16 35 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.07 3.97 6.10 -2.39 -0.01 3.96 16 Total: -1.00 -62.32 293.46 0.14 -62.18 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.22 Total: 23.37 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 2.49 Total: -38.13 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.91 Total: -82.18 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.25 Total: -10.72 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -62.32 0.14 -62.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.938 kcal (2) G-P(sol) polarization free energy of solvation -62.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds