Wall clock time and date at job start Mon Mar 30 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48500 * 109.47468 * 240.00223 * 3 2 1 5 5 H 1.48503 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47139 * 119.99962 * 3 2 1 7 7 C 1.37881 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00419 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99696 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50648 * 300.08126 * 9 7 2 11 11 C 1.53120 * 109.50613 * 179.97438 * 9 7 2 12 12 C 1.53116 * 109.15936 * 297.67754 * 11 9 7 13 13 C 1.53037 * 109.28039 * 302.34088 * 12 11 9 14 14 H 1.09005 * 109.46032 * 299.17529 * 13 12 11 15 15 C 1.50698 * 109.46543 * 179.19578 * 13 12 11 16 16 C 1.38269 * 119.94432 * 99.97872 * 15 13 12 17 17 C 1.38137 * 120.06013 * 180.02562 * 16 15 13 18 18 C 1.38737 * 119.94162 * 359.97438 * 17 16 15 19 19 O 1.35896 * 120.05545 * 180.02562 * 18 17 16 20 20 C 1.38734 * 119.88732 * 0.27760 * 18 17 16 21 21 C 1.38140 * 119.94299 * 359.46795 * 20 18 17 22 22 N 1.46849 * 109.51098 * 59.18493 * 13 12 11 23 23 C 1.46839 * 111.19882 * 298.23912 * 22 13 12 24 24 H 0.96994 * 119.99948 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.52493 * 177.76591 * 11 9 7 26 26 H 1.09005 * 109.51947 * 57.58107 * 11 9 7 27 27 H 1.09001 * 109.50019 * 182.40111 * 12 11 9 28 28 H 1.09001 * 109.50348 * 62.28470 * 12 11 9 29 29 H 1.08008 * 119.96973 * 0.02562 * 16 15 13 30 30 H 1.07997 * 120.03660 * 179.97438 * 17 16 15 31 31 H 0.96700 * 114.00170 * 90.00174 * 19 18 17 32 32 H 1.07999 * 120.02623 * 179.72382 * 20 18 17 33 33 H 1.08005 * 119.97486 * 180.27482 * 21 20 18 34 34 H 1.00898 * 111.00186 * 62.35191 * 22 13 12 35 35 H 1.08997 * 109.47760 * 301.74975 * 23 22 13 36 36 H 1.09001 * 109.46815 * 181.76864 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6235 -2.5571 0.8888 11 6 2.2454 -3.6636 -0.0018 12 6 3.0817 -3.6089 -1.2833 13 6 2.1507 -3.6607 -2.4968 14 1 1.5871 -4.5937 -2.4826 15 6 2.9683 -3.5872 -3.7605 16 6 3.2530 -4.7415 -4.4665 17 6 4.0027 -4.6770 -5.6249 18 6 4.4697 -3.4525 -6.0802 19 8 5.2071 -3.3863 -7.2198 20 6 4.1872 -2.2964 -5.3672 21 6 3.4326 -2.3657 -4.2122 22 7 1.2198 -2.5260 -2.4496 23 6 0.3731 -2.5832 -1.2513 24 1 -0.4850 0.8400 0.0004 25 1 1.7014 -4.6072 0.0382 26 1 2.9015 -3.5833 0.8650 27 1 3.7623 -4.4598 -1.3102 28 1 3.6555 -2.6824 -1.3041 29 1 2.8888 -5.6945 -4.1119 30 1 4.2251 -5.5789 -6.1758 31 1 4.6814 -3.2607 -8.0217 32 1 4.5534 -1.3426 -5.7171 33 1 3.2086 -1.4655 -3.6592 34 1 1.7159 -1.6489 -2.5005 35 1 -0.1819 -3.5212 -1.2429 36 1 -0.3265 -1.7474 -1.2605 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260304796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:52 Heat of formation + Delta-G solvation = -49.026163 kcal Electronic energy + Delta-G solvation = -18084.880983 eV Core-core repulsion = 15339.356518 eV Total energy + Delta-G solvation = -2745.524465 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94586 -39.54158 -37.47295 -34.78204 -32.68003 -32.11724 -31.76258 -29.26433 -26.83316 -24.68156 -23.73360 -23.45534 -21.78552 -20.77251 -19.28613 -18.04471 -17.32715 -16.73920 -16.43989 -16.18163 -15.57549 -15.38642 -14.95833 -14.77640 -14.39781 -14.18380 -13.75235 -13.65525 -13.02740 -12.87819 -12.80645 -12.72958 -12.52898 -12.39803 -11.90497 -11.80344 -11.75003 -11.29111 -10.99366 -10.79773 -10.40724 -9.86778 -9.42371 -8.82818 -8.07972 -6.20251 0.34766 0.47563 1.40510 1.42225 1.48533 2.42465 2.74222 3.19387 3.37392 3.68781 3.97641 4.00142 4.12297 4.28131 4.35741 4.53043 4.53497 4.66299 4.81093 4.83301 4.91929 5.00365 5.07626 5.14901 5.27408 5.36269 5.43381 5.45297 5.51497 5.61636 5.69914 5.82487 5.96202 6.04331 6.31881 6.60639 6.74501 6.91240 6.93713 7.47197 8.95935 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.025754 B = 0.006776 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.958100 B = 4131.420965 C = 4783.400031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.048 0.952 9 C 0.005 3.995 10 H -0.007 1.007 11 C -0.103 4.103 12 C -0.125 4.125 13 C 0.129 3.871 14 H 0.084 0.916 15 C -0.080 4.080 16 C -0.100 4.100 17 C -0.144 4.144 18 C 0.092 3.908 19 O -0.509 6.509 20 C -0.153 4.153 21 C -0.103 4.103 22 N -0.672 5.672 23 C 0.074 3.926 24 H 0.260 0.740 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.408 0.592 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.336 0.664 35 H 0.037 0.963 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.459 -8.026 -11.496 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.066 0.934 9 C -0.015 4.015 10 H 0.011 0.989 11 C -0.141 4.141 12 C -0.164 4.164 13 C 0.019 3.981 14 H 0.102 0.898 15 C -0.080 4.080 16 C -0.119 4.119 17 C -0.162 4.162 18 C 0.048 3.952 19 O -0.322 6.322 20 C -0.171 4.171 21 C -0.122 4.122 22 N -0.301 5.301 23 C -0.056 4.056 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.163 0.837 30 H 0.167 0.833 31 H 0.267 0.733 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.055 0.945 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.287 -8.274 -11.533 15.524 hybrid contribution 0.409 1.625 0.885 1.895 sum 6.696 -6.649 -10.648 14.228 Atomic orbital electron populations 1.69963 1.06968 1.27087 1.51012 1.25594 0.95438 1.01728 0.95008 0.85865 0.78550 0.80068 0.78701 1.19394 1.21282 1.20415 1.21271 0.92467 0.91368 1.50395 0.93365 1.19350 0.94067 0.93285 0.94766 0.98860 1.21504 0.97908 0.97758 0.96913 1.22030 0.98064 1.01192 0.95097 1.20438 0.91402 0.95700 0.90538 0.89804 1.19949 0.97910 0.93825 0.96339 1.21098 0.98062 0.98212 0.94479 1.21564 0.98635 0.98058 0.97972 1.18508 0.94565 0.92506 0.89649 1.84758 1.36020 1.95324 1.16057 1.21503 0.99839 0.99049 0.96715 1.20902 0.97156 0.97789 0.96325 1.61021 1.24291 1.05294 1.39487 1.21774 0.95670 0.99354 0.88790 0.93047 0.92916 0.93845 0.91470 0.93325 0.83738 0.83269 0.73314 0.84850 0.87106 0.84544 0.94483 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.09 11.33 21.45 0.24 -50.85 16 2 C 0.02 1.16 5.30 84.66 0.45 1.61 16 3 Si 0.94 42.72 29.54 68.60 2.03 44.74 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.52 -27.09 6.84 25.60 0.18 -26.91 16 8 H 0.05 2.53 6.87 -2.91 -0.02 2.51 16 9 C 0.01 0.25 2.59 -11.48 -0.03 0.22 16 10 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 11 C -0.10 -4.16 5.46 30.67 0.17 -3.99 16 12 C -0.12 -4.53 5.07 30.65 0.16 -4.38 16 13 C 0.13 4.52 2.66 44.19 0.12 4.64 16 14 H 0.08 2.77 8.00 -2.38 -0.02 2.75 16 15 C -0.08 -2.48 4.96 -19.85 -0.10 -2.58 16 16 C -0.10 -2.54 9.66 22.25 0.21 -2.32 16 17 C -0.14 -3.30 9.99 22.37 0.22 -3.07 16 18 C 0.09 2.27 6.71 22.51 0.15 2.42 16 19 O -0.51 -10.43 13.50 -92.38 -1.25 -11.68 16 20 C -0.15 -4.21 9.99 22.37 0.22 -3.99 16 21 C -0.10 -3.29 9.28 22.25 0.21 -3.08 16 22 N -0.67 -27.95 6.30 -495.56 -3.12 -31.07 16 23 C 0.07 3.45 5.85 86.33 0.51 3.95 16 24 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.97 6.82 -2.39 -0.02 1.95 16 29 H 0.14 2.98 8.03 -2.91 -0.02 2.96 16 30 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.41 4.24 9.06 -74.06 -0.67 3.56 16 32 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 33 H 0.11 3.88 6.62 -2.91 -0.02 3.86 16 34 H 0.34 15.06 6.11 -89.70 -0.55 14.51 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 Total: -1.00 -59.77 289.07 0.23 -59.54 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.13 Total: 26.80 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 2.46 Total: -37.49 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -2.88 Total: -81.92 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.25 Total: -11.68 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -59.77 0.23 -59.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.511 kcal (2) G-P(sol) polarization free energy of solvation -59.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds