Wall clock time and date at job start Mon Mar 30 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99979 * 2 1 4 4 H 1.48502 * 109.47535 * 270.00557 * 3 2 1 5 5 H 1.48504 * 109.47055 * 30.00105 * 3 2 1 6 6 H 1.48504 * 109.47453 * 150.00017 * 3 2 1 7 7 C 1.37880 * 120.00466 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99630 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.53802 * 60.10433 * 9 7 2 11 11 C 1.53120 * 109.50381 * 180.19933 * 9 7 2 12 12 C 1.53123 * 109.15816 * 62.28973 * 11 9 7 13 13 C 1.53034 * 109.27909 * 57.65334 * 12 11 9 14 14 H 1.09004 * 109.46172 * 60.83746 * 13 12 11 15 15 C 1.50707 * 109.46347 * 180.80392 * 13 12 11 16 16 C 1.38259 * 119.94106 * 79.77820 * 15 13 12 17 17 C 1.38149 * 120.05698 * 179.72675 * 16 15 13 18 18 C 1.38740 * 119.93850 * 0.54940 * 17 16 15 19 19 O 1.35901 * 120.05321 * 179.74821 * 18 17 16 20 20 C 1.38733 * 119.88720 * 359.72590 * 18 17 16 21 21 C 1.38139 * 119.94432 * 0.02562 * 20 18 17 22 22 N 1.46847 * 109.52616 * 300.82043 * 13 12 11 23 23 C 1.46848 * 111.19556 * 61.74332 * 22 13 12 24 24 H 0.96995 * 120.00284 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.52597 * 182.19089 * 11 9 7 26 26 H 1.08996 * 109.52577 * 302.32198 * 11 9 7 27 27 H 1.08998 * 109.50042 * 177.59599 * 12 11 9 28 28 H 1.09004 * 109.50141 * 297.67612 * 12 11 9 29 29 H 1.08000 * 119.97638 * 0.02562 * 16 15 13 30 30 H 1.08001 * 120.03430 * 180.27758 * 17 16 15 31 31 H 0.96703 * 113.99656 * 269.97548 * 19 18 17 32 32 H 1.08003 * 120.02130 * 180.02562 * 20 18 17 33 33 H 1.08003 * 119.97231 * 180.02562 * 21 20 18 34 34 H 1.00901 * 110.99839 * 297.64822 * 22 13 12 35 35 H 1.08995 * 109.46326 * 58.27554 * 23 22 13 36 36 H 1.08994 * 109.46377 * 178.24455 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6251 -2.5586 -0.8908 11 6 2.2455 -3.6635 0.0038 12 6 3.0799 -3.6069 1.2865 13 6 2.1472 -3.6569 2.4987 14 1 1.5838 -4.5899 2.4852 15 6 2.9631 -3.5815 3.7635 16 6 3.4310 -2.3599 4.2111 17 6 4.1743 -2.2873 5.3733 18 6 4.4609 -3.4431 6.0853 19 8 5.1963 -3.3750 7.2261 20 6 3.9950 -4.6684 5.6309 21 6 3.2477 -4.7348 4.4710 22 7 1.2162 -2.5223 2.4487 23 6 0.3713 -2.5813 1.2490 24 1 -0.4850 0.8400 0.0004 25 1 1.7016 -4.6072 -0.0354 26 1 2.9020 -3.5851 -0.8627 27 1 3.7605 -4.4578 1.3156 28 1 3.6542 -2.6806 1.3064 29 1 3.2111 -1.4610 3.6544 30 1 4.5358 -1.3323 5.7250 31 1 6.1490 -3.4622 7.0856 32 1 4.2164 -5.5694 6.1837 33 1 2.8845 -5.6884 4.1170 34 1 1.7121 -1.6451 2.4990 35 1 -0.1837 -3.5193 1.2414 36 1 -0.3283 -1.7455 1.2561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260304801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:55 Heat of formation + Delta-G solvation = -30.801321 kcal Electronic energy + Delta-G solvation = -18086.005572 eV Core-core repulsion = 15341.271396 eV Total energy + Delta-G solvation = -2744.734176 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74973 -38.12544 -36.29582 -32.96092 -31.05379 -30.81810 -30.34755 -27.81782 -24.92621 -23.27657 -22.42823 -21.99437 -20.43917 -19.02380 -18.28938 -16.17765 -15.99104 -15.38860 -15.13132 -14.67467 -14.17220 -13.79395 -13.50543 -13.26529 -12.95120 -12.68428 -12.51199 -12.06278 -11.69701 -11.41309 -11.11797 -10.97863 -10.87649 -10.68875 -10.34083 -10.28254 -10.16188 -9.86550 -9.18882 -8.87974 -8.76938 -8.43519 -8.24461 -7.16405 -6.05787 -4.12581 1.45197 1.57448 3.25132 3.33515 3.34701 3.83759 4.33223 4.37119 5.00351 5.13959 5.17006 5.23975 5.50023 5.60269 5.72548 5.82719 5.88396 6.05038 6.12237 6.21027 6.33072 6.43512 6.55369 6.61328 6.67303 6.75191 6.88584 6.99506 7.02556 7.08085 7.26135 7.62092 7.64854 7.71751 7.98721 8.18388 8.44052 8.53547 8.92774 9.52479 10.99457 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.006783 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.871964 B = 4126.883450 C = 4779.216347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.009 3.991 10 H 0.027 0.973 11 C -0.107 4.107 12 C -0.133 4.133 13 C 0.125 3.875 14 H 0.074 0.926 15 C -0.060 4.060 16 C -0.088 4.088 17 C -0.143 4.143 18 C 0.085 3.915 19 O -0.503 6.503 20 C -0.146 4.146 21 C -0.104 4.104 22 N -0.672 5.672 23 C 0.063 3.937 24 H 0.261 0.739 25 H 0.034 0.966 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.384 0.616 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.345 0.655 35 H 0.026 0.974 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.796 -7.114 8.074 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.072 0.928 9 C -0.011 4.011 10 H 0.046 0.954 11 C -0.145 4.145 12 C -0.172 4.172 13 C 0.014 3.986 14 H 0.092 0.908 15 C -0.060 4.060 16 C -0.106 4.106 17 C -0.162 4.162 18 C 0.041 3.959 19 O -0.312 6.312 20 C -0.165 4.165 21 C -0.123 4.123 22 N -0.303 5.303 23 C -0.066 4.066 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.238 0.762 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.045 0.955 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.592 -7.205 8.750 13.113 hybrid contribution 1.634 1.144 -0.977 2.221 sum 8.226 -6.062 7.773 12.839 Atomic orbital electron populations 1.69832 1.05831 1.26573 1.50123 1.24963 0.94796 0.98925 0.95095 0.86690 0.79913 0.83855 0.78140 1.20800 1.21163 1.19950 1.21114 0.92690 0.90340 1.50894 0.92806 1.19357 0.93621 0.92323 0.95766 0.95445 1.21579 0.98471 0.98566 0.95900 1.22121 0.98066 1.01142 0.95840 1.20436 0.91770 0.96737 0.89627 0.90786 1.20084 0.96566 0.92865 0.96530 1.20978 0.96061 0.98246 0.95359 1.21388 1.01272 0.98089 0.95423 1.18425 0.97657 0.92617 0.87222 1.84827 1.21878 1.95583 1.28934 1.21277 1.01206 0.97007 0.97010 1.20875 0.98620 0.98233 0.94560 1.61063 1.23607 1.04650 1.40977 1.22048 0.95931 1.00317 0.88288 0.92848 0.94718 0.93461 0.94057 0.91266 0.85218 0.85825 0.76152 0.85990 0.85916 0.83530 0.95511 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.51 -13.11 6.84 -34.44 -0.24 -13.35 16 8 H 0.05 1.39 6.87 -52.49 -0.36 1.03 16 9 C 0.01 0.22 2.60 -91.69 -0.24 -0.02 16 10 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 11 C -0.11 -2.18 5.46 -26.61 -0.15 -2.33 16 12 C -0.13 -2.46 5.07 -26.65 -0.14 -2.59 16 13 C 0.13 2.26 2.66 -68.87 -0.18 2.08 16 14 H 0.07 1.31 8.00 -51.93 -0.42 0.90 16 15 C -0.06 -0.98 4.96 -104.60 -0.52 -1.50 16 16 C -0.09 -1.43 9.27 -39.61 -0.37 -1.80 16 17 C -0.14 -2.09 9.99 -39.43 -0.39 -2.48 16 18 C 0.08 1.17 6.71 -39.21 -0.26 0.91 16 19 O -0.50 -6.03 13.50 -19.43 -0.26 -6.29 16 20 C -0.15 -1.95 9.99 -39.43 -0.39 -2.34 16 21 C -0.10 -1.49 9.66 -39.61 -0.38 -1.87 16 22 N -0.67 -14.04 6.31 -107.98 -0.68 -14.72 16 23 C 0.06 1.46 5.85 -3.83 -0.02 1.43 16 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.39 6.83 -51.93 -0.35 1.04 16 29 H 0.13 2.20 6.63 -52.49 -0.35 1.85 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.38 2.66 9.06 45.56 0.41 3.07 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 33 H 0.12 1.52 8.03 -52.48 -0.42 1.09 16 34 H 0.34 7.59 6.11 -39.29 -0.24 7.35 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 2.69 6.05 -51.93 -0.31 2.38 16 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -27.93 289.06 -8.49 -36.42 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.14 Total: 10.59 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -3.37 Total: -22.27 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.05 Total: -38.27 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.26 Total: -6.29 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.93 -8.49 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.616 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds