Wall clock time and date at job start Mon Mar 30 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99979 * 2 1 4 4 H 1.48502 * 109.47535 * 270.00557 * 3 2 1 5 5 H 1.48504 * 109.47055 * 30.00105 * 3 2 1 6 6 H 1.48504 * 109.47453 * 150.00017 * 3 2 1 7 7 C 1.37880 * 120.00466 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99630 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.53802 * 60.10433 * 9 7 2 11 11 C 1.53120 * 109.50381 * 180.19933 * 9 7 2 12 12 C 1.53123 * 109.15816 * 62.28973 * 11 9 7 13 13 C 1.53034 * 109.27909 * 57.65334 * 12 11 9 14 14 H 1.09004 * 109.46172 * 60.83746 * 13 12 11 15 15 C 1.50707 * 109.46347 * 180.80392 * 13 12 11 16 16 C 1.38259 * 119.94106 * 79.77820 * 15 13 12 17 17 C 1.38149 * 120.05698 * 179.72675 * 16 15 13 18 18 C 1.38740 * 119.93850 * 0.54940 * 17 16 15 19 19 O 1.35901 * 120.05321 * 179.74821 * 18 17 16 20 20 C 1.38733 * 119.88720 * 359.72590 * 18 17 16 21 21 C 1.38139 * 119.94432 * 0.02562 * 20 18 17 22 22 N 1.46847 * 109.52616 * 300.82043 * 13 12 11 23 23 C 1.46848 * 111.19556 * 61.74332 * 22 13 12 24 24 H 0.96995 * 120.00284 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.52597 * 182.19089 * 11 9 7 26 26 H 1.08996 * 109.52577 * 302.32198 * 11 9 7 27 27 H 1.08998 * 109.50042 * 177.59599 * 12 11 9 28 28 H 1.09004 * 109.50141 * 297.67612 * 12 11 9 29 29 H 1.08000 * 119.97638 * 0.02562 * 16 15 13 30 30 H 1.08001 * 120.03430 * 180.27758 * 17 16 15 31 31 H 0.96703 * 113.99656 * 269.97548 * 19 18 17 32 32 H 1.08003 * 120.02130 * 180.02562 * 20 18 17 33 33 H 1.08003 * 119.97231 * 180.02562 * 21 20 18 34 34 H 1.00901 * 110.99839 * 297.64822 * 22 13 12 35 35 H 1.08995 * 109.46326 * 58.27554 * 23 22 13 36 36 H 1.08994 * 109.46377 * 178.24455 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6251 -2.5586 -0.8908 11 6 2.2455 -3.6635 0.0038 12 6 3.0799 -3.6069 1.2865 13 6 2.1472 -3.6569 2.4987 14 1 1.5838 -4.5899 2.4852 15 6 2.9631 -3.5815 3.7635 16 6 3.4310 -2.3599 4.2111 17 6 4.1743 -2.2873 5.3733 18 6 4.4609 -3.4431 6.0853 19 8 5.1963 -3.3750 7.2261 20 6 3.9950 -4.6684 5.6309 21 6 3.2477 -4.7348 4.4710 22 7 1.2162 -2.5223 2.4487 23 6 0.3713 -2.5813 1.2490 24 1 -0.4850 0.8400 0.0004 25 1 1.7016 -4.6072 -0.0354 26 1 2.9020 -3.5851 -0.8627 27 1 3.7605 -4.4578 1.3156 28 1 3.6542 -2.6806 1.3064 29 1 3.2111 -1.4610 3.6544 30 1 4.5358 -1.3323 5.7250 31 1 6.1490 -3.4622 7.0856 32 1 4.2164 -5.5694 6.1837 33 1 2.8845 -5.6884 4.1170 34 1 1.7121 -1.6451 2.4990 35 1 -0.1837 -3.5193 1.2414 36 1 -0.3283 -1.7455 1.2561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260304801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:55 Heat of formation + Delta-G solvation = -49.087637 kcal Electronic energy + Delta-G solvation = -18086.798526 eV Core-core repulsion = 15341.271396 eV Total energy + Delta-G solvation = -2745.527130 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94502 -39.54096 -37.47331 -34.78166 -32.67831 -32.11591 -31.76182 -29.26191 -26.83468 -24.68022 -23.73257 -23.45636 -21.78425 -20.76995 -19.28718 -18.04896 -17.32990 -16.74020 -16.44643 -16.15976 -15.55869 -15.38882 -14.96513 -14.79243 -14.32476 -14.19083 -13.96299 -13.49253 -13.04061 -12.88762 -12.80390 -12.70348 -12.48580 -12.42499 -11.92732 -11.78437 -11.74639 -11.28972 -11.00153 -10.78977 -10.40594 -9.86572 -9.42947 -8.81896 -8.07938 -6.20273 0.34897 0.47618 1.39164 1.42399 1.50021 2.42411 2.74710 3.19594 3.36909 3.69226 3.97475 4.00147 4.12517 4.28749 4.36382 4.53273 4.53762 4.66521 4.81460 4.83933 4.91936 5.00603 5.08041 5.15077 5.27957 5.36723 5.43831 5.45492 5.51630 5.61791 5.70172 5.82656 5.96513 6.04444 6.31916 6.60781 6.74925 6.91631 6.94081 7.47292 8.96131 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.006783 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.871964 B = 4126.883450 C = 4779.216347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.020 3.980 3 Si 0.942 3.058 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.050 0.950 9 C 0.005 3.995 10 H -0.007 1.007 11 C -0.103 4.103 12 C -0.123 4.123 13 C 0.129 3.871 14 H 0.083 0.917 15 C -0.080 4.080 16 C -0.103 4.103 17 C -0.152 4.152 18 C 0.092 3.908 19 O -0.509 6.509 20 C -0.144 4.144 21 C -0.100 4.100 22 N -0.673 5.673 23 C 0.074 3.926 24 H 0.260 0.740 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.111 0.889 30 H 0.134 0.866 31 H 0.408 0.592 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.336 0.664 35 H 0.036 0.964 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.484 -8.441 9.597 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.179 4.179 3 Si 0.769 3.231 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.068 0.932 9 C -0.015 4.015 10 H 0.011 0.989 11 C -0.141 4.141 12 C -0.162 4.162 13 C 0.019 3.981 14 H 0.101 0.899 15 C -0.080 4.080 16 C -0.122 4.122 17 C -0.171 4.171 18 C 0.048 3.952 19 O -0.322 6.322 20 C -0.162 4.162 21 C -0.119 4.119 22 N -0.303 5.303 23 C -0.056 4.056 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.152 0.848 31 H 0.267 0.733 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.054 0.946 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.313 -8.547 10.277 15.741 hybrid contribution 1.156 1.513 -1.386 2.355 sum 9.469 -7.034 8.890 14.771 Atomic orbital electron populations 1.69970 1.07025 1.27003 1.51122 1.25610 0.95434 1.01799 0.95047 0.85793 0.79017 0.80362 0.77921 1.20800 1.21215 1.19142 1.21304 0.92525 0.91299 1.50202 0.93204 1.19350 0.94089 0.93385 0.94674 0.98896 1.21504 0.97924 0.97677 0.97003 1.22018 0.98012 1.01290 0.94923 1.20441 0.91422 0.95613 0.90641 0.89924 1.19949 0.97734 0.93848 0.96483 1.20909 0.97257 0.97773 0.96248 1.21511 1.01233 0.99233 0.95114 1.18513 0.97243 0.92463 0.87016 1.84766 1.23799 1.95525 1.28067 1.21561 1.00202 0.97840 0.96633 1.21090 0.98077 0.98241 0.94466 1.61020 1.24463 1.05322 1.39463 1.21773 0.95713 0.99303 0.88822 0.93089 0.92997 0.93729 0.91295 0.93218 0.87062 0.84814 0.73323 0.83283 0.83760 0.84519 0.94576 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.28 11.32 21.45 0.24 -51.04 16 2 C 0.02 1.09 5.30 84.66 0.45 1.54 16 3 Si 0.94 42.64 29.54 68.60 2.03 44.67 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.52 -26.88 6.84 25.60 0.18 -26.70 16 8 H 0.05 2.60 6.87 -2.91 -0.02 2.58 16 9 C 0.00 0.24 2.60 -11.49 -0.03 0.21 16 10 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C -0.10 -4.13 5.46 30.68 0.17 -3.97 16 12 C -0.12 -4.41 5.07 30.65 0.16 -4.25 16 13 C 0.13 4.51 2.66 44.19 0.12 4.63 16 14 H 0.08 2.74 8.00 -2.38 -0.02 2.73 16 15 C -0.08 -2.48 4.96 -19.85 -0.10 -2.57 16 16 C -0.10 -3.29 9.27 22.25 0.21 -3.08 16 17 C -0.15 -4.19 9.99 22.37 0.22 -3.97 16 18 C 0.09 2.26 6.71 22.51 0.15 2.41 16 19 O -0.51 -10.42 13.50 -92.43 -1.25 -11.67 16 20 C -0.14 -3.30 9.99 22.36 0.22 -3.08 16 21 C -0.10 -2.54 9.66 22.25 0.21 -2.33 16 22 N -0.67 -28.28 6.31 -495.55 -3.13 -31.40 16 23 C 0.07 3.46 5.85 86.33 0.51 3.96 16 24 H 0.26 14.09 8.31 -92.71 -0.77 13.31 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.97 6.83 -2.38 -0.02 1.95 16 29 H 0.11 3.87 6.63 -2.91 -0.02 3.85 16 30 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 31 H 0.41 4.13 9.06 -74.06 -0.67 3.46 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.14 2.98 8.03 -2.91 -0.02 2.96 16 34 H 0.34 15.14 6.11 -89.69 -0.55 14.59 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 3.82 6.05 -2.39 -0.01 3.80 16 Total: -1.00 -60.10 289.06 0.23 -59.87 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: -0.13 Total: 26.77 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 2.46 Total: -37.20 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.88 Total: -82.44 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.25 Total: -11.67 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -60.10 0.23 -59.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.779 kcal (2) G-P(sol) polarization free energy of solvation -60.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds