Wall clock time and date at job start Mon Mar 30 2020 06:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99528 * 2 1 4 4 H 1.48501 * 109.46916 * 269.99683 * 3 2 1 5 5 H 1.48497 * 109.47266 * 29.99512 * 3 2 1 6 6 H 1.48498 * 109.47166 * 149.99643 * 3 2 1 7 7 C 1.37871 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00068 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49981 * 59.92328 * 9 7 2 11 11 C 1.53116 * 109.50246 * 180.02562 * 9 7 2 12 12 C 1.53121 * 109.16127 * 177.59871 * 11 9 7 13 13 C 1.53037 * 109.27611 * 302.34394 * 12 11 9 14 14 H 1.08999 * 109.46200 * 299.17453 * 13 12 11 15 15 C 1.50696 * 109.46132 * 179.19275 * 13 12 11 16 16 C 1.38274 * 119.94301 * 100.00463 * 15 13 12 17 17 C 1.38141 * 120.05552 * 180.27916 * 16 15 13 18 18 C 1.38738 * 119.94395 * 359.44290 * 17 16 15 19 19 O 1.35897 * 120.05494 * 180.25974 * 18 17 16 20 20 C 1.38729 * 119.88657 * 0.52992 * 18 17 16 21 21 C 1.38149 * 119.94477 * 359.75178 * 20 18 17 22 22 N 1.46850 * 109.52342 * 59.17812 * 13 12 11 23 23 C 1.46840 * 111.19905 * 298.25957 * 22 13 12 24 24 H 0.96993 * 120.00685 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.52278 * 57.69103 * 11 9 7 26 26 H 1.09009 * 109.52427 * 297.49998 * 11 9 7 27 27 H 1.09000 * 109.50368 * 182.40638 * 12 11 9 28 28 H 1.08995 * 109.50118 * 62.28665 * 12 11 9 29 29 H 1.08002 * 119.96836 * 359.97438 * 16 15 13 30 30 H 1.07998 * 120.02987 * 179.70379 * 17 16 15 31 31 H 0.96705 * 113.99994 * 270.27208 * 19 18 17 32 32 H 1.07998 * 120.02610 * 179.76708 * 20 18 17 33 33 H 1.07996 * 119.96812 * 179.97438 * 21 20 18 34 34 H 1.00909 * 110.99740 * 62.35447 * 22 13 12 35 35 H 1.09004 * 109.46584 * 301.72420 * 23 22 13 36 36 H 1.09005 * 109.46370 * 181.75462 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6229 -2.5574 -0.8871 11 6 2.2456 -3.6634 0.0027 12 6 1.4731 -4.9841 0.0645 13 6 0.5903 -4.9950 1.3145 14 1 1.2169 -4.9107 2.2024 15 6 -0.1869 -6.2849 1.3690 16 6 0.2424 -7.3154 2.1850 17 6 -0.4650 -8.5010 2.2324 18 6 -1.6136 -8.6530 1.4692 19 8 -2.3142 -9.8164 1.5181 20 6 -2.0425 -7.6174 0.6517 21 6 -1.3282 -6.4359 0.6035 22 7 -0.3436 -3.8628 1.2657 23 6 0.3747 -2.5821 1.2535 24 1 -0.4851 0.8399 -0.0004 25 1 2.8997 -3.5830 0.8709 26 1 2.8429 -3.6331 -0.9086 27 1 2.1767 -5.8154 0.1087 28 1 0.8483 -5.0820 -0.8232 29 1 1.1343 -7.1950 2.7821 30 1 -0.1267 -9.3073 2.8663 31 1 -2.0295 -10.4746 0.8693 32 1 -2.9342 -7.7348 0.0538 33 1 -1.6616 -5.6297 -0.0331 34 1 -0.9620 -3.9381 0.4718 35 1 1.0024 -2.5092 2.1417 36 1 -0.3440 -1.7626 1.2486 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260304807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:58 Heat of formation + Delta-G solvation = -31.942028 kcal Electronic energy + Delta-G solvation = -17648.626758 eV Core-core repulsion = 14903.843117 eV Total energy + Delta-G solvation = -2744.783641 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86306 -38.16619 -36.34800 -33.21660 -31.10523 -30.91730 -30.53412 -28.07135 -24.84017 -23.22941 -22.39446 -22.09075 -20.48734 -19.20846 -18.39581 -16.36753 -16.14487 -15.58385 -15.21688 -14.65343 -14.31919 -13.92761 -13.65347 -13.25416 -13.07638 -12.75571 -12.50733 -12.04752 -11.89730 -11.76327 -11.17477 -10.97415 -10.76285 -10.47787 -10.46099 -10.32039 -10.16711 -10.05111 -9.27046 -9.05596 -8.88921 -8.45528 -8.31878 -7.35278 -6.04105 -4.08917 1.33263 1.45339 3.28208 3.35517 3.38436 3.71678 4.22848 4.40218 4.87370 5.00784 5.03915 5.24113 5.29300 5.46496 5.56113 5.67416 5.73222 5.90678 6.01136 6.08513 6.22205 6.32994 6.44046 6.48737 6.59401 6.64968 6.81514 6.90436 6.91850 6.98935 7.25629 7.55696 7.62255 7.78888 7.92117 8.02078 8.26572 8.45999 8.94286 9.55475 11.02413 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.058628 B = 0.004541 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.470374 B = 6164.202057 C = 6372.494486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.016 3.984 10 H 0.024 0.976 11 C -0.110 4.110 12 C -0.143 4.143 13 C 0.125 3.875 14 H 0.082 0.918 15 C -0.063 4.063 16 C -0.102 4.102 17 C -0.145 4.145 18 C 0.087 3.913 19 O -0.502 6.502 20 C -0.143 4.143 21 C -0.090 4.090 22 N -0.686 5.686 23 C 0.061 3.939 24 H 0.261 0.739 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.385 0.615 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.330 0.670 35 H 0.046 0.954 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 -15.257 1.184 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.003 4.003 10 H 0.042 0.958 11 C -0.147 4.147 12 C -0.182 4.182 13 C 0.014 3.986 14 H 0.100 0.900 15 C -0.063 4.063 16 C -0.121 4.121 17 C -0.164 4.164 18 C 0.043 3.957 19 O -0.312 6.312 20 C -0.161 4.161 21 C -0.109 4.109 22 N -0.315 5.315 23 C -0.067 4.067 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.240 0.760 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.065 0.935 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.843 -14.815 2.350 15.113 hybrid contribution 1.072 0.663 -1.333 1.835 sum -0.771 -14.152 1.017 14.210 Atomic orbital electron populations 1.69838 1.05836 1.26596 1.50693 1.24974 0.94879 0.99105 0.94967 0.86597 0.79884 0.83494 0.78051 1.20771 1.21177 1.19956 1.21131 0.92886 0.90469 1.50730 0.92745 1.19309 0.93620 0.92234 0.95185 0.95813 1.21669 0.98623 0.94135 1.00305 1.22291 0.99105 0.98845 0.97955 1.20477 0.92314 0.87865 0.97941 0.90018 1.20080 0.95388 0.95532 0.95331 1.20904 0.99838 0.92610 0.98726 1.21318 0.95022 0.98803 1.01218 1.18436 0.92120 0.87208 0.97967 1.84833 1.60287 1.24870 1.61188 1.21375 1.00826 0.94213 0.99734 1.20891 0.94471 0.96636 0.98885 1.61046 1.20134 1.02639 1.47676 1.22287 0.97966 0.88778 0.97668 0.92883 0.93225 0.93400 0.93104 0.92633 0.85751 0.85847 0.76048 0.85749 0.85542 0.85279 0.93539 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.85 11.34 55.43 0.63 -24.22 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.82 8.56 -34.44 -0.29 -14.12 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.39 2.25 -91.69 -0.21 0.19 16 10 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 11 C -0.11 -2.23 5.22 -26.61 -0.14 -2.37 16 12 C -0.14 -2.44 5.34 -26.65 -0.14 -2.58 16 13 C 0.12 2.11 2.66 -68.88 -0.18 1.93 16 14 H 0.08 1.41 8.00 -51.93 -0.42 1.00 16 15 C -0.06 -0.94 4.96 -104.60 -0.52 -1.46 16 16 C -0.10 -1.36 9.66 -39.60 -0.38 -1.74 16 17 C -0.15 -1.79 9.99 -39.43 -0.39 -2.18 16 18 C 0.09 1.09 6.70 -39.22 -0.26 0.83 16 19 O -0.50 -5.50 13.50 -19.42 -0.26 -5.76 16 20 C -0.14 -1.85 9.99 -39.43 -0.39 -2.24 16 21 C -0.09 -1.29 9.28 -39.61 -0.37 -1.65 16 22 N -0.69 -13.34 6.35 -107.99 -0.69 -14.02 16 23 C 0.06 1.41 5.60 -3.84 -0.02 1.39 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.12 1.45 8.03 -52.49 -0.42 1.03 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.38 2.26 9.06 45.56 0.41 2.67 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.13 1.76 6.62 -52.49 -0.35 1.41 16 34 H 0.33 6.23 7.06 -39.29 -0.28 5.95 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.11 2.76 6.11 -51.93 -0.32 2.44 16 LS Contribution 293.47 15.07 4.42 4.42 Total: -1.00 -29.00 293.47 -8.61 -37.61 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.29 Total: 8.42 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -3.40 Total: -22.42 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.06 Total: -38.25 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.26 Total: -5.76 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.00 -8.61 -37.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.666 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds