Wall clock time and date at job start Mon Mar 30 2020 06:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99528 * 2 1 4 4 H 1.48501 * 109.46916 * 269.99683 * 3 2 1 5 5 H 1.48497 * 109.47266 * 29.99512 * 3 2 1 6 6 H 1.48498 * 109.47166 * 149.99643 * 3 2 1 7 7 C 1.37871 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00068 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49981 * 59.92328 * 9 7 2 11 11 C 1.53116 * 109.50246 * 180.02562 * 9 7 2 12 12 C 1.53121 * 109.16127 * 177.59871 * 11 9 7 13 13 C 1.53037 * 109.27611 * 302.34394 * 12 11 9 14 14 H 1.08999 * 109.46200 * 299.17453 * 13 12 11 15 15 C 1.50696 * 109.46132 * 179.19275 * 13 12 11 16 16 C 1.38274 * 119.94301 * 100.00463 * 15 13 12 17 17 C 1.38141 * 120.05552 * 180.27916 * 16 15 13 18 18 C 1.38738 * 119.94395 * 359.44290 * 17 16 15 19 19 O 1.35897 * 120.05494 * 180.25974 * 18 17 16 20 20 C 1.38729 * 119.88657 * 0.52992 * 18 17 16 21 21 C 1.38149 * 119.94477 * 359.75178 * 20 18 17 22 22 N 1.46850 * 109.52342 * 59.17812 * 13 12 11 23 23 C 1.46840 * 111.19905 * 298.25957 * 22 13 12 24 24 H 0.96993 * 120.00685 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.52278 * 57.69103 * 11 9 7 26 26 H 1.09009 * 109.52427 * 297.49998 * 11 9 7 27 27 H 1.09000 * 109.50368 * 182.40638 * 12 11 9 28 28 H 1.08995 * 109.50118 * 62.28665 * 12 11 9 29 29 H 1.08002 * 119.96836 * 359.97438 * 16 15 13 30 30 H 1.07998 * 120.02987 * 179.70379 * 17 16 15 31 31 H 0.96705 * 113.99994 * 270.27208 * 19 18 17 32 32 H 1.07998 * 120.02610 * 179.76708 * 20 18 17 33 33 H 1.07996 * 119.96812 * 179.97438 * 21 20 18 34 34 H 1.00909 * 110.99740 * 62.35447 * 22 13 12 35 35 H 1.09004 * 109.46584 * 301.72420 * 23 22 13 36 36 H 1.09005 * 109.46370 * 181.75462 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6229 -2.5574 -0.8871 11 6 2.2456 -3.6634 0.0027 12 6 1.4731 -4.9841 0.0645 13 6 0.5903 -4.9950 1.3145 14 1 1.2169 -4.9107 2.2024 15 6 -0.1869 -6.2849 1.3690 16 6 0.2424 -7.3154 2.1850 17 6 -0.4650 -8.5010 2.2324 18 6 -1.6136 -8.6530 1.4692 19 8 -2.3142 -9.8164 1.5181 20 6 -2.0425 -7.6174 0.6517 21 6 -1.3282 -6.4359 0.6035 22 7 -0.3436 -3.8628 1.2657 23 6 0.3747 -2.5821 1.2535 24 1 -0.4851 0.8399 -0.0004 25 1 2.8997 -3.5830 0.8709 26 1 2.8429 -3.6331 -0.9086 27 1 2.1767 -5.8154 0.1087 28 1 0.8483 -5.0820 -0.8232 29 1 1.1343 -7.1950 2.7821 30 1 -0.1267 -9.3073 2.8663 31 1 -2.0295 -10.4746 0.8693 32 1 -2.9342 -7.7348 0.0538 33 1 -1.6616 -5.6297 -0.0331 34 1 -0.9620 -3.9381 0.4718 35 1 1.0024 -2.5092 2.1417 36 1 -0.3440 -1.7626 1.2486 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260304807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:58 Heat of formation + Delta-G solvation = -51.249947 kcal Electronic energy + Delta-G solvation = -17649.464012 eV Core-core repulsion = 14903.843117 eV Total energy + Delta-G solvation = -2745.620895 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96284 -39.51064 -37.46858 -35.05965 -32.70645 -32.21988 -31.80793 -29.50645 -26.63250 -24.62351 -23.66832 -23.50401 -21.80414 -20.88186 -19.29709 -18.40576 -17.37240 -16.69026 -16.57809 -16.16456 -15.71494 -15.27847 -15.08453 -14.75102 -14.28548 -14.23469 -14.00406 -13.57800 -13.24412 -12.92156 -12.85625 -12.60645 -12.45605 -12.13754 -12.04481 -11.94454 -11.77486 -11.33125 -11.18498 -10.89242 -10.45323 -9.87924 -9.46095 -8.95804 -8.11073 -6.23280 0.32594 0.46229 1.40702 1.42325 1.51991 2.42517 2.72350 3.16191 3.36167 3.56531 3.84962 3.95776 4.10960 4.19096 4.27740 4.50398 4.51270 4.65158 4.73724 4.76766 4.85055 4.97009 5.05156 5.13236 5.20326 5.26457 5.38282 5.45404 5.50631 5.57756 5.70557 5.88239 5.94446 5.99052 6.17731 6.48353 6.62475 6.89749 6.91745 7.44125 8.93686 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.058628 B = 0.004541 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.470374 B = 6164.202057 C = 6372.494486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.015 3.985 10 H -0.006 1.006 11 C -0.104 4.104 12 C -0.132 4.132 13 C 0.129 3.871 14 H 0.080 0.920 15 C -0.081 4.081 16 C -0.102 4.102 17 C -0.146 4.146 18 C 0.092 3.908 19 O -0.509 6.509 20 C -0.150 4.150 21 C -0.101 4.101 22 N -0.684 5.684 23 C 0.078 3.922 24 H 0.261 0.739 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.409 0.591 32 H 0.139 0.861 33 H 0.121 0.879 34 H 0.332 0.668 35 H 0.036 0.964 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 -17.023 1.620 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.068 0.932 9 C -0.005 4.005 10 H 0.012 0.988 11 C -0.142 4.142 12 C -0.171 4.171 13 C 0.019 3.981 14 H 0.098 0.902 15 C -0.082 4.082 16 C -0.121 4.121 17 C -0.164 4.164 18 C 0.048 3.952 19 O -0.322 6.322 20 C -0.168 4.168 21 C -0.119 4.119 22 N -0.313 5.313 23 C -0.051 4.051 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.267 0.733 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.055 0.945 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.391 -16.614 2.772 16.901 hybrid contribution 0.881 1.103 -1.476 2.042 sum -0.510 -15.512 1.295 15.574 Atomic orbital electron populations 1.69975 1.07050 1.27249 1.51146 1.25717 0.95679 1.02297 0.94651 0.85629 0.78779 0.79557 0.78126 1.20307 1.20849 1.19369 1.21505 0.92972 0.92081 1.50897 0.93155 1.19264 0.94016 0.92974 0.94221 0.98827 1.21557 0.97967 0.94478 1.00194 1.22182 0.99240 0.97663 0.98040 1.20440 0.92045 0.87932 0.97663 0.90220 1.19886 0.96056 0.95004 0.97235 1.21086 1.00426 0.92361 0.98182 1.21564 0.94681 0.98996 1.01155 1.18551 0.91856 0.87643 0.97148 1.84772 1.60316 1.24841 1.62293 1.21533 1.01243 0.93858 1.00185 1.20917 0.94732 0.97193 0.99087 1.60953 1.20450 1.02075 1.47837 1.21857 0.96809 0.89791 0.96620 0.92934 0.93225 0.93558 0.90414 0.92823 0.84178 0.83533 0.73250 0.84354 0.86144 0.85022 0.94538 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.34 11.34 21.45 0.24 -52.10 16 2 C 0.02 0.86 5.30 84.65 0.45 1.31 16 3 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -29.44 8.56 25.60 0.22 -29.23 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 9 C 0.02 0.75 2.25 -11.49 -0.03 0.73 16 10 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 11 C -0.10 -4.24 5.22 30.67 0.16 -4.08 16 12 C -0.13 -4.38 5.34 30.65 0.16 -4.21 16 13 C 0.13 4.28 2.66 44.19 0.12 4.40 16 14 H 0.08 2.67 8.00 -2.39 -0.02 2.65 16 15 C -0.08 -2.31 4.96 -19.85 -0.10 -2.41 16 16 C -0.10 -2.45 9.66 22.26 0.22 -2.24 16 17 C -0.15 -3.13 9.99 22.37 0.22 -2.90 16 18 C 0.09 2.06 6.70 22.51 0.15 2.22 16 19 O -0.51 -9.47 13.50 -92.39 -1.25 -10.72 16 20 C -0.15 -3.58 9.99 22.37 0.22 -3.36 16 21 C -0.10 -2.76 9.28 22.25 0.21 -2.55 16 22 N -0.68 -26.95 6.35 -495.57 -3.15 -30.09 16 23 C 0.08 3.73 5.60 86.33 0.48 4.22 16 24 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.14 2.85 8.03 -2.91 -0.02 2.82 16 30 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.41 3.36 9.06 -74.05 -0.67 2.68 16 32 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.12 3.35 6.62 -2.91 -0.02 3.33 16 34 H 0.33 12.85 7.06 -89.69 -0.63 12.21 16 35 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.07 3.95 6.11 -2.38 -0.01 3.94 16 Total: -1.00 -62.32 293.47 0.15 -62.18 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.22 Total: 23.36 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 2.49 Total: -38.11 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -2.91 Total: -82.19 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.25 Total: -10.72 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -62.32 0.15 -62.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.929 kcal (2) G-P(sol) polarization free energy of solvation -62.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds