Wall clock time and date at job start Mon Mar 30 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36001 * 116.99893 * 2 1 4 4 C 1.38525 * 120.00125 * 359.97438 * 3 2 1 5 5 C 1.38467 * 120.33790 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.83049 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46899 * 90.00716 * 6 5 4 8 8 H 1.07998 * 119.99861 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00072 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00133 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00092 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47322 * 89.99945 * 11 9 7 13 13 H 1.48497 * 109.47270 * 210.00374 * 11 9 7 14 14 H 1.48509 * 109.46913 * 330.00021 * 11 9 7 15 15 C 1.37824 * 120.33552 * 0.02562 * 5 4 3 16 16 C 1.39767 * 119.99626 * 359.97438 * 15 5 4 17 17 C 1.43205 * 120.16882 * 179.97438 * 16 15 5 18 18 N 5.85399 * 152.61180 * 359.94928 * 2 1 3 19 19 C 1.39062 * 120.00013 * 180.02562 * 3 2 1 20 20 O 1.35801 * 120.17051 * 359.97438 * 19 3 2 21 21 C 1.42903 * 116.99742 * 89.99872 * 20 19 3 22 22 H 1.08997 * 109.47328 * 300.00210 * 1 2 3 23 23 H 1.09005 * 109.46825 * 60.00448 * 1 2 3 24 24 H 1.09001 * 109.47106 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.83345 * 359.75023 * 4 3 2 26 26 H 1.09001 * 109.46948 * 210.00216 * 6 5 4 27 27 H 1.08993 * 109.47694 * 330.00568 * 6 5 4 28 28 H 0.96997 * 119.99652 * 180.02562 * 10 9 7 29 29 H 1.07998 * 120.00241 * 180.02562 * 15 5 4 30 30 H 1.09004 * 109.46607 * 60.00511 * 21 20 19 31 31 H 1.08995 * 109.46948 * 180.02562 * 21 20 19 32 32 H 1.09003 * 109.47263 * 300.00656 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2920 2.3736 -0.0005 5 6 1.9133 3.6110 -0.0011 6 6 1.0814 4.8676 -0.0022 7 6 0.8037 5.2874 1.4182 8 1 1.1905 4.7025 2.2396 9 6 0.0557 6.4181 1.6692 10 7 -0.1871 6.7842 2.9088 11 14 -0.6128 7.4301 0.2485 12 1 -1.9577 6.9260 -0.1287 13 1 -0.7149 8.8534 0.6595 14 1 0.3030 7.3155 -0.9150 15 6 3.2887 3.6993 -0.0016 16 6 4.0636 2.5361 -0.0011 17 6 5.4930 2.6235 -0.0022 18 7 6.6269 2.6929 -0.0024 19 6 3.4352 1.2846 -0.0005 20 8 4.1782 0.1479 -0.0005 21 6 4.5326 -0.3954 -1.2738 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2136 2.3139 -0.0050 26 1 1.6231 5.6615 -0.5164 27 1 0.1390 4.6790 -0.5162 28 1 -0.7136 7.5795 3.0853 29 1 3.7677 4.6672 -0.0016 30 1 5.1172 0.3366 -1.8312 31 1 5.1235 -1.3001 -1.1311 32 1 3.6272 -0.6373 -1.8305 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260306840.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:29 Heat of formation + Delta-G solvation = -22.470210 kcal Electronic energy + Delta-G solvation = -17242.846267 eV Core-core repulsion = 14362.640261 eV Total energy + Delta-G solvation = -2880.206007 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43664 -38.17649 -37.27214 -36.10944 -33.28429 -31.44969 -30.27620 -28.28159 -27.32954 -26.29319 -23.38674 -22.96526 -21.08035 -18.47946 -17.36578 -16.91733 -16.73304 -16.38628 -15.93245 -15.10659 -14.55608 -14.45224 -14.02961 -13.57710 -13.52373 -13.25205 -12.71124 -12.53818 -12.30661 -12.14089 -11.79804 -11.69373 -11.47453 -11.41143 -10.90627 -10.63545 -10.20570 -10.03971 -9.94949 -9.50953 -8.70070 -8.42991 -7.85144 -6.18413 -4.19830 0.89820 1.55037 2.78563 3.17439 3.20005 3.29433 3.29774 3.31883 3.66058 4.11045 4.19100 4.30677 5.05032 5.13671 5.16889 5.25725 5.31060 5.33203 5.38971 5.45647 5.54693 5.61997 5.70745 5.73110 6.33228 6.45174 6.54826 6.73257 6.89244 7.15182 7.23555 7.52597 7.64449 7.70643 8.34884 8.86145 9.40168 10.94048 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023025 B = 0.006663 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.768588 B = 4201.470966 C = 5016.625326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.110 3.890 4 C -0.166 4.166 5 C 0.006 3.994 6 C 0.013 3.987 7 C -0.521 4.521 8 H 0.077 0.923 9 C 0.073 3.927 10 N -0.894 5.894 11 Si 0.876 3.124 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.264 1.264 15 C -0.092 4.092 16 C -0.018 4.018 17 C 0.273 3.727 18 N -0.426 5.426 19 C 0.082 3.918 20 O -0.322 6.322 21 C 0.036 3.964 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.140 0.860 26 H 0.035 0.965 27 H 0.029 0.971 28 H 0.266 0.734 29 H 0.139 0.861 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -11.641 -9.534 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.064 3.936 4 C -0.185 4.185 5 C 0.005 3.995 6 C -0.024 4.024 7 C -0.558 4.558 8 H 0.095 0.905 9 C -0.130 4.130 10 N -0.532 5.532 11 Si 0.703 3.297 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.188 1.188 15 C -0.113 4.113 16 C -0.022 4.022 17 C -0.042 4.042 18 N -0.102 5.102 19 C 0.035 3.965 20 O -0.238 6.238 21 C -0.059 4.059 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.116 0.884 25 H 0.158 0.842 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.988 -11.696 -9.265 15.217 hybrid contribution -1.219 0.797 -0.686 1.610 sum 1.769 -10.899 -9.951 14.864 Atomic orbital electron populations 1.23112 0.78334 1.03696 1.01991 1.86102 1.21302 1.26018 1.88845 1.19053 0.90726 0.85134 0.98683 1.21357 1.00761 0.90970 1.05430 1.20056 0.93063 0.95896 0.90462 1.18884 0.94367 0.89946 0.99168 1.20873 1.34063 1.10807 0.90093 0.90509 1.24980 0.95512 0.96985 0.95517 1.69889 1.39116 1.25431 1.18784 0.86836 0.79875 0.79851 0.83149 1.20096 1.21138 1.18806 1.20983 0.93266 0.96575 1.00440 1.16047 0.84683 0.93395 1.08072 1.25376 0.92334 0.93087 0.93414 1.81158 1.11846 1.07968 1.09214 1.17578 0.86442 0.84904 1.07618 1.86058 1.70307 1.38531 1.28943 1.22995 0.99746 0.98384 0.84766 0.91986 0.92556 0.88419 0.84237 0.94643 0.95265 0.92409 0.84344 0.94067 0.89077 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.42 10.28 -34.32 -0.35 -4.77 16 3 C 0.11 1.73 6.69 -39.17 -0.26 1.47 16 4 C -0.17 -2.71 8.68 -39.39 -0.34 -3.05 16 5 C 0.01 0.10 5.06 -104.69 -0.53 -0.43 16 6 C 0.01 0.28 4.16 -29.03 -0.12 0.16 16 7 C -0.52 -13.57 9.65 -34.44 -0.33 -13.90 16 8 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 11 Si 0.88 19.87 27.47 -169.99 -4.67 15.20 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 15 C -0.09 -1.57 9.39 -39.16 -0.37 -1.94 16 16 C -0.02 -0.30 5.75 -106.72 -0.61 -0.91 16 17 C 0.27 4.59 14.87 -22.47 -0.33 4.25 16 18 N -0.43 -7.58 18.54 41.84 0.78 -6.81 16 19 C 0.08 1.33 5.74 -38.60 -0.22 1.11 16 20 O -0.32 -5.07 9.63 -33.69 -0.32 -5.40 16 21 C 0.04 0.42 11.13 101.05 1.12 1.54 16 22 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 23 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 24 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.14 2.07 6.27 -52.48 -0.33 1.74 16 26 H 0.04 0.73 7.14 -51.93 -0.37 0.36 16 27 H 0.03 0.59 7.51 -51.93 -0.39 0.20 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 290.19 15.07 4.37 4.37 Total: -1.00 -30.11 290.19 -4.11 -34.22 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -3.58 Total: -2.95 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.11 Total: -8.59 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 1.55 Total: -32.10 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.68 Total: -10.17 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.11 -4.11 -34.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260306840.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.753 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds