Wall clock time and date at job start Mon Mar 30 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36001 * 116.99893 * 2 1 4 4 C 1.38525 * 120.00125 * 359.97438 * 3 2 1 5 5 C 1.38467 * 120.33790 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.83049 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46899 * 90.00716 * 6 5 4 8 8 H 1.07998 * 119.99861 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00072 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00133 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00092 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47322 * 89.99945 * 11 9 7 13 13 H 1.48497 * 109.47270 * 210.00374 * 11 9 7 14 14 H 1.48509 * 109.46913 * 330.00021 * 11 9 7 15 15 C 1.37824 * 120.33552 * 0.02562 * 5 4 3 16 16 C 1.39767 * 119.99626 * 359.97438 * 15 5 4 17 17 C 1.43205 * 120.16882 * 179.97438 * 16 15 5 18 18 N 5.85399 * 152.61180 * 359.94928 * 2 1 3 19 19 C 1.39062 * 120.00013 * 180.02562 * 3 2 1 20 20 O 1.35801 * 120.17051 * 359.97438 * 19 3 2 21 21 C 1.42903 * 116.99742 * 89.99872 * 20 19 3 22 22 H 1.08997 * 109.47328 * 300.00210 * 1 2 3 23 23 H 1.09005 * 109.46825 * 60.00448 * 1 2 3 24 24 H 1.09001 * 109.47106 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.83345 * 359.75023 * 4 3 2 26 26 H 1.09001 * 109.46948 * 210.00216 * 6 5 4 27 27 H 1.08993 * 109.47694 * 330.00568 * 6 5 4 28 28 H 0.96997 * 119.99652 * 180.02562 * 10 9 7 29 29 H 1.07998 * 120.00241 * 180.02562 * 15 5 4 30 30 H 1.09004 * 109.46607 * 60.00511 * 21 20 19 31 31 H 1.08995 * 109.46948 * 180.02562 * 21 20 19 32 32 H 1.09003 * 109.47263 * 300.00656 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2920 2.3736 -0.0005 5 6 1.9133 3.6110 -0.0011 6 6 1.0814 4.8676 -0.0022 7 6 0.8037 5.2874 1.4182 8 1 1.1905 4.7025 2.2396 9 6 0.0557 6.4181 1.6692 10 7 -0.1871 6.7842 2.9088 11 14 -0.6128 7.4301 0.2485 12 1 -1.9577 6.9260 -0.1287 13 1 -0.7149 8.8534 0.6595 14 1 0.3030 7.3155 -0.9150 15 6 3.2887 3.6993 -0.0016 16 6 4.0636 2.5361 -0.0011 17 6 5.4930 2.6235 -0.0022 18 7 6.6269 2.6929 -0.0024 19 6 3.4352 1.2846 -0.0005 20 8 4.1782 0.1479 -0.0005 21 6 4.5326 -0.3954 -1.2738 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2136 2.3139 -0.0050 26 1 1.6231 5.6615 -0.5164 27 1 0.1390 4.6790 -0.5162 28 1 -0.7136 7.5795 3.0853 29 1 3.7677 4.6672 -0.0016 30 1 5.1172 0.3366 -1.8312 31 1 5.1235 -1.3001 -1.1311 32 1 3.6272 -0.6373 -1.8305 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260306840.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:28 Heat of formation + Delta-G solvation = -40.586983 kcal Electronic energy + Delta-G solvation = -17243.631870 eV Core-core repulsion = 14362.640261 eV Total energy + Delta-G solvation = -2880.991609 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.65822 -39.30556 -38.54299 -37.47517 -35.11633 -33.07766 -31.54363 -29.69843 -28.27017 -27.56691 -24.67745 -24.58815 -22.46036 -19.76800 -18.92249 -18.57610 -17.95684 -17.60697 -17.03941 -16.32299 -16.13065 -15.56978 -15.39064 -14.90231 -14.84124 -14.58089 -14.36656 -13.99719 -13.76494 -13.44179 -13.12331 -12.91234 -12.72850 -12.60826 -12.31195 -12.13054 -11.74668 -11.64768 -11.44666 -11.08277 -10.73215 -9.75640 -9.12835 -8.23954 -6.29962 -0.40398 0.26422 1.43437 1.45976 1.46832 1.56646 1.83513 2.19467 2.40951 2.47500 2.84072 2.89290 3.11726 3.88007 3.96942 4.17001 4.36774 4.38447 4.40543 4.46012 4.48298 4.48768 4.74661 4.81831 5.00383 5.07882 5.11259 5.12981 5.45730 5.63279 5.72677 6.07333 6.29095 6.31827 6.53616 6.78015 7.33895 8.92206 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023025 B = 0.006663 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.768588 B = 4201.470966 C = 5016.625326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.317 6.317 3 C 0.112 3.888 4 C -0.160 4.160 5 C -0.017 4.017 6 C 0.018 3.982 7 C -0.521 4.521 8 H 0.032 0.968 9 C 0.010 3.990 10 N -0.950 5.950 11 Si 0.946 3.054 12 H -0.263 1.263 13 H -0.292 1.292 14 H -0.238 1.238 15 C -0.093 4.093 16 C -0.022 4.022 17 C 0.285 3.715 18 N -0.445 5.445 19 C 0.087 3.913 20 O -0.340 6.340 21 C 0.030 3.970 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.127 0.873 25 H 0.154 0.846 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.266 0.734 29 H 0.142 0.858 30 H 0.042 0.958 31 H 0.114 0.886 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -12.653 -11.697 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.230 6.230 3 C 0.066 3.934 4 C -0.179 4.179 5 C -0.018 4.018 6 C -0.019 4.019 7 C -0.559 4.559 8 H 0.050 0.950 9 C -0.188 4.188 10 N -0.590 5.590 11 Si 0.769 3.231 12 H -0.188 1.188 13 H -0.218 1.218 14 H -0.161 1.161 15 C -0.113 4.113 16 C -0.026 4.026 17 C -0.030 4.030 18 N -0.121 5.121 19 C 0.040 3.960 20 O -0.257 6.257 21 C -0.063 4.063 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.145 0.855 25 H 0.171 0.829 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.061 0.939 31 H 0.132 0.868 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.477 -12.739 -11.453 17.309 hybrid contribution -1.029 0.926 0.041 1.385 sum 1.448 -11.813 -11.412 16.489 Atomic orbital electron populations 1.23438 0.76229 1.05889 1.02453 1.86106 1.23414 1.25017 1.88487 1.19007 0.90625 0.85597 0.98199 1.21461 1.01557 0.90508 1.04383 1.19856 0.93263 0.95572 0.93059 1.18750 0.95741 0.91497 0.95929 1.21143 1.32924 1.10017 0.91767 0.94963 1.25944 0.96045 0.98497 0.98268 1.70063 1.40916 1.26436 1.21587 0.85723 0.79981 0.77313 0.80089 1.18775 1.21784 1.16137 1.20988 0.93059 0.97031 1.00265 1.15979 0.84342 0.93470 1.08802 1.25372 0.92270 0.92506 0.92814 1.81164 1.12307 1.08577 1.10011 1.17724 0.86935 0.85066 1.06316 1.86011 1.70270 1.38200 1.31203 1.23236 1.00657 0.99098 0.83320 0.92490 0.91068 0.85497 0.82856 0.93848 0.93579 0.92491 0.84008 0.93922 0.86774 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.81 113.37 1.11 1.37 16 2 O -0.32 -8.32 10.28 -79.62 -0.82 -9.14 16 3 C 0.11 3.35 6.69 22.54 0.15 3.50 16 4 C -0.16 -4.99 8.68 22.39 0.19 -4.79 16 5 C -0.02 -0.61 5.06 -19.91 -0.10 -0.71 16 6 C 0.02 0.73 4.16 29.10 0.12 0.85 16 7 C -0.52 -27.47 9.65 25.60 0.25 -27.23 16 8 H 0.03 1.93 7.98 -2.91 -0.02 1.91 16 9 C 0.01 0.53 5.47 84.65 0.46 0.99 16 10 N -0.95 -56.90 13.96 21.45 0.30 -56.60 16 11 Si 0.95 40.27 27.47 68.60 1.88 42.15 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 13 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16 15 C -0.09 -3.11 9.39 22.54 0.21 -2.89 16 16 C -0.02 -0.70 5.75 -21.22 -0.12 -0.82 16 17 C 0.28 9.36 14.87 88.33 1.31 10.67 16 18 N -0.44 -15.49 18.54 19.01 0.35 -15.14 16 19 C 0.09 2.71 5.74 22.91 0.13 2.84 16 20 O -0.34 -10.12 9.63 -77.38 -0.75 -10.87 16 21 C 0.03 0.65 11.13 113.37 1.26 1.91 16 22 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 23 H 0.07 1.09 7.65 -2.38 -0.02 1.08 16 24 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.15 4.25 6.27 -2.91 -0.02 4.23 16 26 H 0.04 1.70 7.14 -2.39 -0.02 1.69 16 27 H 0.05 1.73 7.51 -2.39 -0.02 1.71 16 28 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -65.42 290.19 7.04 -58.39 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.08 Total: 5.52 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 4.98 Total: -14.31 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: 0.65 Total: -71.74 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -1.56 Total: -20.01 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.88 Total: 42.15 kcal Total: -65.42 7.04 -58.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260306840.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.800 kcal (2) G-P(sol) polarization free energy of solvation -65.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds