Wall clock time and date at job start Mon Mar 30 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34249 * 126.49215 * 2 1 4 4 N 1.36791 * 109.92739 * 180.29891 * 3 2 1 5 5 H 0.96998 * 125.07157 * 179.73330 * 4 3 2 6 6 C 1.37776 * 109.85777 * 359.73292 * 4 3 2 7 7 C 1.40624 * 107.16047 * 359.97438 * 6 4 3 8 8 C 1.39665 * 119.94439 * 179.97438 * 7 6 4 9 9 C 1.36633 * 119.81117 * 0.02562 * 8 7 6 10 10 C 1.50693 * 119.73109 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46818 * 89.99963 * 10 9 8 12 12 C 1.50703 * 109.46820 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00608 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99563 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99482 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00315 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46906 * 90.00030 * 16 14 12 18 18 H 1.48498 * 109.47328 * 210.00491 * 16 14 12 19 19 H 1.48500 * 109.47207 * 330.00471 * 16 14 12 20 20 C 1.38797 * 120.54488 * 0.02562 * 9 8 7 21 21 C 1.37983 * 120.63527 * 359.97438 * 20 9 8 22 22 F 1.35100 * 120.13081 * 180.02562 * 21 20 9 23 23 H 1.08999 * 109.47000 * 270.12480 * 1 2 3 24 24 H 1.08995 * 109.47223 * 30.12972 * 1 2 3 25 25 H 1.08997 * 109.46752 * 150.13535 * 1 2 3 26 26 H 1.08000 * 125.03632 * 0.03431 * 3 2 1 27 27 H 1.08004 * 120.09045 * 180.02562 * 8 7 6 28 28 H 1.09002 * 109.47887 * 210.00164 * 10 9 8 29 29 H 1.09004 * 109.47183 * 330.00732 * 10 9 8 30 30 H 1.08999 * 109.47299 * 300.00251 * 11 10 9 31 31 H 1.08992 * 109.47016 * 60.00588 * 11 10 9 32 32 H 0.97004 * 120.00016 * 179.97438 * 15 14 12 33 33 H 1.08002 * 119.68413 * 179.97438 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3054 1.0793 0.0000 4 7 3.6166 0.6893 -0.0067 5 1 4.3771 1.2913 -0.0117 6 6 3.6957 -0.6862 -0.0053 7 6 2.3782 -1.1776 0.0033 8 6 2.1479 -2.5551 0.0060 9 6 3.2052 -3.4206 0.0009 10 6 2.9547 -4.9065 0.0045 11 6 2.8613 -5.4114 -1.4369 12 6 2.6101 -6.8973 -1.4333 13 1 2.5259 -7.4286 -0.4968 14 6 2.4888 -7.5788 -2.6258 15 7 2.2691 -8.8754 -2.6227 16 14 2.6350 -6.6601 -4.2456 17 1 4.0543 -6.6496 -4.6823 18 1 1.8054 -7.3365 -5.2750 19 1 2.1616 -5.2639 -4.0674 20 6 4.5082 -2.9424 -0.0064 21 6 4.7592 -1.5856 -0.0093 22 9 6.0315 -1.1313 -0.0170 23 1 -0.3633 0.0022 1.0277 24 1 -0.3633 0.8888 -0.5158 25 1 -0.3633 -0.8912 -0.5117 26 1 1.9633 2.1036 0.0005 27 1 1.1369 -2.9351 0.0122 28 1 3.7748 -5.4122 0.5141 29 1 2.0197 -5.1161 0.5241 30 1 2.0411 -4.9058 -1.9465 31 1 3.7962 -5.2019 -1.9565 32 1 2.1834 -9.3549 -3.4616 33 1 5.3335 -3.6389 -0.0100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310700.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:37 Heat of formation + Delta-G solvation = -9.455508 kcal Electronic energy + Delta-G solvation = -16982.057358 eV Core-core repulsion = 14114.788501 eV Total energy + Delta-G solvation = -2867.268857 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.72117 -41.15375 -37.41995 -33.57901 -32.87299 -31.65121 -29.57195 -28.68911 -26.54679 -25.06831 -22.62498 -21.67240 -20.22619 -19.20741 -18.17065 -16.90902 -16.39621 -15.97682 -15.65393 -15.23798 -14.30062 -14.22590 -13.95980 -13.50566 -13.14831 -12.80806 -12.69390 -12.60950 -12.43395 -11.94431 -11.82013 -11.59094 -11.15180 -10.90962 -10.83447 -10.02584 -9.83163 -9.67285 -9.29413 -9.16396 -8.51175 -8.06003 -7.41712 -6.02202 -4.00165 1.11937 1.68333 2.60024 3.03270 3.33894 3.41192 3.46715 3.93764 4.35846 4.48292 4.68390 4.85765 5.08957 5.18028 5.30928 5.32507 5.60668 5.67754 5.72266 5.80753 5.87937 6.04663 6.17275 6.38066 6.39141 6.51139 6.66276 6.78279 6.87558 6.96406 7.25403 7.32836 7.44124 7.47817 7.81188 8.55350 9.02800 9.60659 11.11171 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.005693 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.165092 B = 4917.040861 C = 5381.649634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.173 4.173 3 C 0.047 3.953 4 N -0.593 5.593 5 H 0.415 0.585 6 C 0.052 3.948 7 C -0.076 4.076 8 C -0.082 4.082 9 C -0.063 4.063 10 C -0.066 4.066 11 C -0.007 4.007 12 C -0.521 4.521 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.904 5.904 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C -0.123 4.123 21 C 0.077 3.923 22 F -0.149 7.149 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.169 0.831 27 H 0.129 0.871 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.018 0.982 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 20.858 5.766 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.181 4.181 3 C -0.079 4.079 4 N -0.196 5.196 5 H 0.252 0.748 6 C -0.054 4.054 7 C -0.081 4.081 8 C -0.100 4.100 9 C -0.065 4.065 10 C -0.104 4.104 11 C -0.045 4.045 12 C -0.558 4.558 13 H 0.091 0.909 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.704 3.296 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.143 4.143 21 C 0.056 3.944 22 F -0.128 7.128 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.186 0.814 27 H 0.147 0.853 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.348 20.824 5.645 21.578 hybrid contribution 0.829 0.782 -1.007 1.521 sum 1.176 21.605 4.638 22.129 Atomic orbital electron populations 1.20094 0.89320 1.02360 1.01657 1.20281 0.95402 0.90577 1.11807 1.21558 0.82104 0.99040 1.05176 1.41547 1.07622 1.04568 1.65844 0.74839 1.18087 0.94926 0.83562 1.08869 1.18958 0.90653 0.93408 1.05078 1.20261 0.99588 0.90027 1.00148 1.19692 0.91215 0.97744 0.97815 1.20608 1.01931 0.87368 1.00475 1.19572 0.96565 0.96929 0.91402 1.21151 1.49094 0.91074 0.94530 0.90879 1.25003 0.94565 0.94676 0.99107 1.69914 1.49965 1.07481 1.26939 0.86819 0.78358 0.80687 0.83742 1.20313 1.21392 1.18869 1.20859 0.98618 0.91961 1.02819 1.16651 0.76250 0.91348 1.10166 1.91434 1.36987 1.89670 1.94703 0.91894 0.92062 0.91460 0.81383 0.85312 0.91500 0.91310 0.96362 0.96921 0.92757 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.41 36.01 0.37 -0.38 16 2 C -0.17 -2.15 6.32 -102.71 -0.65 -2.80 16 3 C 0.05 0.49 11.73 -16.75 -0.20 0.29 16 4 N -0.59 -6.79 6.07 -10.61 -0.06 -6.85 16 5 H 0.42 3.57 8.96 -40.82 -0.37 3.20 16 6 C 0.05 0.79 7.26 -83.91 -0.61 0.18 16 7 C -0.08 -1.17 6.35 -105.15 -0.67 -1.84 16 8 C -0.08 -1.34 9.67 -39.63 -0.38 -1.72 16 9 C -0.06 -1.11 5.10 -105.00 -0.54 -1.65 16 10 C -0.07 -1.31 5.26 -27.88 -0.15 -1.45 16 11 C -0.01 -0.17 4.02 -27.88 -0.11 -0.29 16 12 C -0.52 -14.80 9.66 -34.44 -0.33 -15.14 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 16 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 20 C -0.12 -2.04 9.64 -39.47 -0.38 -2.43 16 21 C 0.08 1.23 7.32 -39.29 -0.29 0.94 16 22 F -0.15 -2.28 17.27 2.25 0.04 -2.24 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 27 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 28 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 29 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 30 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 31 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 288.53 15.07 4.35 4.35 Total: -1.00 -32.23 288.53 -7.69 -39.92 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.09 Total: -0.93 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -4.02 Total: -24.39 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.71 Total: -34.06 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.23 -7.69 -39.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310700.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.460 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds