Wall clock time and date at job start Mon Mar 30 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34249 * 126.49215 * 2 1 4 4 N 1.36791 * 109.92739 * 180.29891 * 3 2 1 5 5 H 0.96998 * 125.07157 * 179.73330 * 4 3 2 6 6 C 1.37776 * 109.85777 * 359.73292 * 4 3 2 7 7 C 1.40624 * 107.16047 * 359.97438 * 6 4 3 8 8 C 1.39665 * 119.94439 * 179.97438 * 7 6 4 9 9 C 1.36633 * 119.81117 * 0.02562 * 8 7 6 10 10 C 1.50693 * 119.73109 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46818 * 89.99963 * 10 9 8 12 12 C 1.50703 * 109.46820 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00608 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99563 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99482 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00315 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46906 * 90.00030 * 16 14 12 18 18 H 1.48498 * 109.47328 * 210.00491 * 16 14 12 19 19 H 1.48500 * 109.47207 * 330.00471 * 16 14 12 20 20 C 1.38797 * 120.54488 * 0.02562 * 9 8 7 21 21 C 1.37983 * 120.63527 * 359.97438 * 20 9 8 22 22 F 1.35100 * 120.13081 * 180.02562 * 21 20 9 23 23 H 1.08999 * 109.47000 * 270.12480 * 1 2 3 24 24 H 1.08995 * 109.47223 * 30.12972 * 1 2 3 25 25 H 1.08997 * 109.46752 * 150.13535 * 1 2 3 26 26 H 1.08000 * 125.03632 * 0.03431 * 3 2 1 27 27 H 1.08004 * 120.09045 * 180.02562 * 8 7 6 28 28 H 1.09002 * 109.47887 * 210.00164 * 10 9 8 29 29 H 1.09004 * 109.47183 * 330.00732 * 10 9 8 30 30 H 1.08999 * 109.47299 * 300.00251 * 11 10 9 31 31 H 1.08992 * 109.47016 * 60.00588 * 11 10 9 32 32 H 0.97004 * 120.00016 * 179.97438 * 15 14 12 33 33 H 1.08002 * 119.68413 * 179.97438 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3054 1.0793 0.0000 4 7 3.6166 0.6893 -0.0067 5 1 4.3771 1.2913 -0.0117 6 6 3.6957 -0.6862 -0.0053 7 6 2.3782 -1.1776 0.0033 8 6 2.1479 -2.5551 0.0060 9 6 3.2052 -3.4206 0.0009 10 6 2.9547 -4.9065 0.0045 11 6 2.8613 -5.4114 -1.4369 12 6 2.6101 -6.8973 -1.4333 13 1 2.5259 -7.4286 -0.4968 14 6 2.4888 -7.5788 -2.6258 15 7 2.2691 -8.8754 -2.6227 16 14 2.6350 -6.6601 -4.2456 17 1 4.0543 -6.6496 -4.6823 18 1 1.8054 -7.3365 -5.2750 19 1 2.1616 -5.2639 -4.0674 20 6 4.5082 -2.9424 -0.0064 21 6 4.7592 -1.5856 -0.0093 22 9 6.0315 -1.1313 -0.0170 23 1 -0.3633 0.0022 1.0277 24 1 -0.3633 0.8888 -0.5158 25 1 -0.3633 -0.8912 -0.5117 26 1 1.9633 2.1036 0.0005 27 1 1.1369 -2.9351 0.0122 28 1 3.7748 -5.4122 0.5141 29 1 2.0197 -5.1161 0.5241 30 1 2.0411 -4.9058 -1.9465 31 1 3.7962 -5.2019 -1.9565 32 1 2.1834 -9.3549 -3.4616 33 1 5.3335 -3.6389 -0.0100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260310700.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:37 Heat of formation + Delta-G solvation = -27.935262 kcal Electronic energy + Delta-G solvation = -16982.858700 eV Core-core repulsion = 14114.788501 eV Total energy + Delta-G solvation = -2868.070200 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.92649 -42.17846 -38.67101 -35.49496 -33.81724 -33.49147 -30.68337 -30.24329 -27.44940 -26.74231 -23.79845 -23.24698 -21.74482 -20.27602 -19.18218 -18.94623 -17.70768 -17.15343 -16.83674 -16.33670 -16.29834 -15.33163 -15.25420 -14.92316 -14.68758 -14.31633 -13.81665 -13.62710 -13.53956 -13.48708 -13.23575 -12.83603 -12.73666 -12.40862 -12.09063 -11.82707 -11.61553 -11.55714 -11.29260 -10.75423 -10.37162 -9.20862 -8.48445 -8.28407 -6.31729 -0.02648 0.46104 1.35536 1.36881 1.49560 1.67753 2.11354 2.36598 2.71076 3.07185 3.19028 3.66689 3.86308 3.92350 4.19807 4.35728 4.50701 4.55929 4.67461 4.72252 4.79931 4.96070 5.01940 5.03576 5.12702 5.25450 5.32967 5.42995 5.46024 5.63586 5.69387 5.79220 5.82237 6.10351 6.29687 6.62327 6.75994 7.32866 8.88279 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.005693 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.165092 B = 4917.040861 C = 5381.649634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.199 4.199 3 C 0.074 3.926 4 N -0.582 5.582 5 H 0.430 0.570 6 C 0.040 3.960 7 C -0.093 4.093 8 C -0.087 4.087 9 C -0.080 4.080 10 C -0.056 4.056 11 C -0.002 4.002 12 C -0.530 4.530 13 H 0.038 0.962 14 C 0.008 3.992 15 N -0.950 5.950 16 Si 0.944 3.056 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.250 1.250 20 C -0.138 4.138 21 C 0.075 3.925 22 F -0.147 7.147 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.218 0.782 27 H 0.132 0.868 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.266 0.734 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 24.570 5.119 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.206 4.206 3 C -0.053 4.053 4 N -0.186 5.186 5 H 0.269 0.731 6 C -0.068 4.068 7 C -0.098 4.098 8 C -0.105 4.105 9 C -0.081 4.081 10 C -0.093 4.093 11 C -0.039 4.039 12 C -0.568 4.568 13 H 0.056 0.944 14 C -0.189 4.189 15 N -0.591 5.591 16 Si 0.768 3.232 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.174 1.174 20 C -0.158 4.158 21 C 0.054 3.946 22 F -0.126 7.126 23 H 0.089 0.911 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.235 0.765 27 H 0.150 0.850 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.105 24.566 5.014 25.073 hybrid contribution 0.891 -0.290 -0.709 1.175 sum 0.996 24.276 4.305 24.675 Atomic orbital electron populations 1.20132 0.87715 1.02967 1.02379 1.20658 0.96754 0.89888 1.13264 1.22331 0.80858 1.00671 1.01433 1.41694 1.09007 1.03381 1.64556 0.73062 1.18163 0.94440 0.85238 1.08948 1.19308 0.91887 0.93722 1.04923 1.20355 0.99397 0.90872 0.99907 1.19396 0.92143 0.96204 1.00385 1.20365 1.01890 0.89326 0.97742 1.19472 0.96279 0.93879 0.94286 1.21498 1.48508 0.93473 0.93305 0.94387 1.25927 0.94264 0.95478 1.03222 1.70057 1.51522 1.09327 1.28173 0.85744 0.78824 0.79842 0.78812 1.19370 1.20669 1.17407 1.20861 0.98347 0.92714 1.03897 1.16646 0.76630 0.91323 1.10040 1.91433 1.36906 1.89567 1.94679 0.91121 0.89575 0.92750 0.76504 0.84974 0.91761 0.91384 0.96340 0.96805 0.92482 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.41 71.24 0.74 -0.49 16 2 C -0.20 -4.31 6.32 -18.62 -0.12 -4.43 16 3 C 0.07 1.17 11.73 83.01 0.97 2.14 16 4 N -0.58 -11.23 6.07 -187.49 -1.14 -12.37 16 5 H 0.43 5.72 8.96 -92.71 -0.83 4.89 16 6 C 0.04 1.13 7.26 39.04 0.28 1.41 16 7 C -0.09 -2.71 6.35 -20.20 -0.13 -2.84 16 8 C -0.09 -2.81 9.67 22.24 0.22 -2.60 16 9 C -0.08 -2.82 5.10 -20.11 -0.10 -2.92 16 10 C -0.06 -2.25 5.26 29.85 0.16 -2.09 16 11 C 0.00 -0.08 4.02 29.85 0.12 0.04 16 12 C -0.53 -31.02 9.66 25.60 0.25 -30.78 16 13 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 14 C 0.01 0.47 5.47 84.66 0.46 0.93 16 15 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 16 Si 0.94 45.48 27.47 68.60 1.88 47.37 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 20 C -0.14 -4.61 9.64 22.34 0.22 -4.39 16 21 C 0.08 2.32 7.32 22.46 0.16 2.48 16 22 F -0.15 -4.31 17.27 44.97 0.78 -3.53 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.22 1.26 8.06 -2.91 -0.02 1.23 16 27 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 28 H 0.06 2.56 8.08 -2.39 -0.02 2.54 16 29 H 0.07 2.68 8.08 -2.39 -0.02 2.66 16 30 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 31 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 32 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -70.76 288.53 5.29 -65.46 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.24 Total: 6.61 kcal Atomic # 6 Polarization: -46.77 SS G_CDS: 3.23 Total: -43.54 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -0.84 Total: -72.37 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.78 Total: -3.53 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.37 kcal Total: -70.76 5.29 -65.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310700.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.529 kcal (2) G-P(sol) polarization free energy of solvation -70.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds