Wall clock time and date at job start Mon Mar 30 2020 06:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99827 * 2 1 4 4 H 1.48507 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47233 * 299.99439 * 3 2 1 6 6 H 1.48501 * 109.47432 * 59.99789 * 3 2 1 7 7 C 1.37882 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99465 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99838 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47033 * 299.99939 * 9 7 2 11 11 N 1.46896 * 109.47055 * 60.00138 * 9 7 2 12 12 C 1.50698 * 109.46589 * 179.97438 * 9 7 2 13 13 C 1.38004 * 119.66847 * 265.02189 * 12 9 7 14 14 C 1.38128 * 119.83320 * 179.79531 * 13 12 9 15 15 C 1.38484 * 119.70901 * 0.60894 * 14 13 12 16 16 O 1.35896 * 119.78941 * 179.65027 * 15 14 13 17 17 C 1.39357 * 120.42250 * 359.37481 * 15 14 13 18 18 C 1.37618 * 119.65433 * 0.21194 * 17 15 14 19 19 C 1.50635 * 122.54842 * 180.39073 * 18 17 15 20 20 C 1.52729 * 110.59558 * 342.27516 * 19 18 17 21 21 C 1.53330 * 108.37915 * 51.10827 * 20 19 18 22 22 C 1.50629 * 117.75541 * 179.97438 * 17 15 14 23 23 H 0.96997 * 120.00058 * 0.02562 * 1 2 3 24 24 H 1.00901 * 111.00045 * 59.99792 * 11 9 7 25 25 H 1.00898 * 110.99811 * 183.94947 * 11 9 7 26 26 H 1.07994 * 120.08510 * 0.04714 * 13 12 9 27 27 H 1.08001 * 120.14955 * 180.35407 * 14 13 12 28 28 H 0.96700 * 114.00170 * 269.72906 * 16 15 14 29 29 H 1.09008 * 109.25018 * 221.99267 * 19 18 17 30 30 H 1.08999 * 109.25359 * 102.56768 * 19 18 17 31 31 H 1.08999 * 109.68384 * 291.38684 * 20 19 18 32 32 H 1.09001 * 109.68317 * 170.82707 * 20 19 18 33 33 H 1.09003 * 109.68418 * 170.41022 * 21 20 19 34 34 H 1.08996 * 109.68533 * 49.85045 * 21 20 19 35 35 H 1.09000 * 109.25120 * 282.81522 * 22 17 15 36 36 H 1.09000 * 109.24961 * 42.24682 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2303 -3.6446 0.0005 13 6 2.5951 -4.2314 -1.1941 14 6 3.4958 -5.2787 -1.1984 15 6 4.0168 -5.7407 -0.0014 16 8 4.8975 -6.7757 -0.0032 17 6 3.6481 -5.1475 1.2045 18 6 2.7570 -4.0988 1.2030 19 6 2.3204 -3.4045 2.4665 20 6 2.6285 -4.2681 3.6880 21 6 4.0979 -4.7001 3.6164 22 6 4.2508 -5.6983 2.4703 23 1 -0.4850 0.8400 -0.0004 24 1 0.9653 -2.5260 -2.0381 25 1 -0.1570 -3.4139 -1.1907 26 1 2.1807 -3.8700 -2.1235 27 1 3.7892 -5.7379 -2.1308 28 1 4.4822 -7.6457 0.0720 29 1 1.2476 -3.2163 2.4208 30 1 2.8478 -2.4548 2.5554 31 1 1.9863 -5.1488 3.6863 32 1 2.4593 -3.6914 4.5974 33 1 4.3880 -5.1720 4.5552 34 1 4.7279 -3.8299 3.4322 35 1 3.7464 -6.6281 2.7335 36 1 5.3097 -5.8982 2.3068 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260338978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:29 Heat of formation + Delta-G solvation = -54.355395 kcal Electronic energy + Delta-G solvation = -18299.009529 eV Core-core repulsion = 15553.253972 eV Total energy + Delta-G solvation = -2745.755557 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.35331 -38.42523 -37.38070 -35.47246 -33.49697 -32.13051 -31.15272 -28.91186 -27.83545 -24.69927 -24.30663 -23.53304 -21.37681 -20.19916 -18.88133 -18.44625 -17.15242 -16.80294 -16.53171 -16.20794 -15.86000 -15.09893 -14.80833 -14.60492 -14.47545 -14.32388 -13.79019 -13.46051 -13.37276 -13.23124 -12.88387 -12.55679 -12.51935 -12.23158 -11.89000 -11.81791 -11.70234 -11.25821 -11.10439 -10.90704 -10.54287 -9.42917 -9.17341 -8.85854 -7.97783 -6.18066 0.44620 0.49185 1.38913 1.42163 1.51942 2.44494 2.79674 3.25197 3.37716 3.80942 3.84682 4.06445 4.19571 4.27965 4.36218 4.40962 4.49182 4.57761 4.69019 4.76467 4.98957 5.02991 5.08102 5.09539 5.16840 5.22759 5.36385 5.42447 5.48908 5.55543 5.69997 5.78187 5.93096 6.04703 6.23020 6.67668 6.93881 7.10530 7.27131 7.53362 9.05079 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.007817 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.611227 B = 3581.166192 C = 4129.495062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.036 0.964 9 C 0.260 3.740 10 H 0.024 0.976 11 N -0.822 5.822 12 C -0.108 4.108 13 C -0.128 4.128 14 C -0.150 4.150 15 C 0.079 3.921 16 O -0.499 6.499 17 C -0.111 4.111 18 C -0.073 4.073 19 C -0.073 4.073 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.067 4.067 23 H 0.255 0.745 24 H 0.322 0.678 25 H 0.311 0.689 26 H 0.121 0.879 27 H 0.140 0.860 28 H 0.403 0.597 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.507 -13.318 4.389 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.569 4.569 8 H 0.055 0.945 9 C 0.151 3.849 10 H 0.041 0.959 11 N -0.350 5.350 12 C -0.111 4.111 13 C -0.147 4.147 14 C -0.168 4.168 15 C 0.035 3.965 16 O -0.311 6.311 17 C -0.112 4.112 18 C -0.074 4.074 19 C -0.110 4.110 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.104 4.104 23 H 0.064 0.936 24 H 0.135 0.865 25 H 0.122 0.878 26 H 0.139 0.861 27 H 0.158 0.842 28 H 0.260 0.740 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.408 -12.081 4.599 14.428 hybrid contribution 0.350 0.080 -0.643 0.736 sum 6.758 -12.000 3.956 14.329 Atomic orbital electron populations 1.70214 1.06790 1.26190 1.48192 1.25586 0.95360 1.01372 0.94182 0.85806 0.78969 0.80906 0.77631 1.19982 1.20762 1.20439 1.20981 0.91511 0.90967 1.53443 0.94540 1.17891 0.87762 0.89271 0.90006 0.95876 1.59019 1.28552 1.43032 1.04375 1.21574 0.99129 0.97100 0.93282 1.20848 0.99114 0.97030 0.97699 1.21405 0.97970 0.98944 0.98472 1.18351 0.93538 0.92937 0.91719 1.84741 1.33500 1.16932 1.95977 1.20162 0.97619 0.97326 0.96048 1.19543 0.96912 0.95755 0.95159 1.20359 1.00558 0.98028 0.92082 1.21566 0.97187 0.99538 0.96730 1.21552 0.96120 0.98844 0.98795 1.20327 1.00725 0.98753 0.90548 0.93574 0.86479 0.87769 0.86097 0.84175 0.73951 0.92348 0.92313 0.91183 0.90471 0.88860 0.93094 0.89276 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.37 12.77 21.45 0.27 -51.09 16 2 C 0.04 2.16 5.39 84.66 0.46 2.62 16 3 Si 0.94 44.42 29.54 68.60 2.03 46.45 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 7 C -0.53 -29.40 8.62 25.60 0.22 -29.18 16 8 H 0.04 2.09 7.74 -2.91 -0.02 2.07 16 9 C 0.26 12.98 2.29 43.42 0.10 13.08 16 10 H 0.02 1.29 6.15 -2.39 -0.01 1.28 16 11 N -0.82 -38.88 8.13 -174.96 -1.42 -40.30 16 12 C -0.11 -4.64 4.99 -19.76 -0.10 -4.74 16 13 C -0.13 -4.88 9.25 22.19 0.21 -4.68 16 14 C -0.15 -4.88 9.98 22.30 0.22 -4.66 16 15 C 0.08 2.46 6.66 22.60 0.15 2.61 16 16 O -0.50 -12.33 12.53 -92.38 -1.16 -13.49 16 17 C -0.11 -3.64 5.75 -19.76 -0.11 -3.75 16 18 C -0.07 -2.83 5.74 -19.87 -0.11 -2.94 16 19 C -0.07 -2.73 4.93 29.74 0.15 -2.58 16 20 C -0.11 -3.06 5.98 30.61 0.18 -2.87 16 21 C -0.12 -2.79 5.98 30.62 0.18 -2.60 16 22 C -0.07 -1.66 5.28 29.74 0.16 -1.50 16 23 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 24 H 0.32 14.52 7.17 -89.69 -0.64 13.87 16 25 H 0.31 13.13 9.06 -89.70 -0.81 12.32 16 26 H 0.12 4.42 6.25 -2.91 -0.02 4.40 16 27 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 28 H 0.40 5.75 9.06 -74.06 -0.67 5.08 16 29 H 0.06 2.39 6.31 -2.38 -0.02 2.38 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.89 7.76 -2.39 -0.02 1.87 16 Total: -1.00 -65.40 289.75 0.41 -64.99 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -1.01 Total: 34.66 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 1.70 Total: -41.20 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -1.15 Total: -91.40 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.16 Total: -13.49 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.40 0.41 -64.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.630 kcal (2) G-P(sol) polarization free energy of solvation -65.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds