Wall clock time and date at job start Mon Mar 30 2020 06:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99693 * 2 1 4 4 H 1.48493 * 109.47561 * 269.99935 * 3 2 1 5 5 H 1.48500 * 109.47433 * 30.00551 * 3 2 1 6 6 H 1.48505 * 109.46860 * 149.99908 * 3 2 1 7 7 C 1.37871 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00145 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00179 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.46927 * 60.00196 * 9 7 2 11 11 N 1.46897 * 109.47379 * 300.00545 * 9 7 2 12 12 C 1.50698 * 109.47556 * 180.02562 * 9 7 2 13 13 C 1.38004 * 119.66847 * 100.02236 * 12 9 7 14 14 C 1.38128 * 119.83320 * 179.79531 * 13 12 9 15 15 C 1.38484 * 119.70901 * 0.60894 * 14 13 12 16 16 O 1.35896 * 119.78941 * 179.65027 * 15 14 13 17 17 C 1.39357 * 120.42250 * 359.37481 * 15 14 13 18 18 C 1.37618 * 119.65433 * 0.21194 * 17 15 14 19 19 C 1.50635 * 122.54842 * 180.39073 * 18 17 15 20 20 C 1.52729 * 110.59558 * 342.27516 * 19 18 17 21 21 C 1.53330 * 108.37915 * 51.10827 * 20 19 18 22 22 C 1.50629 * 117.75541 * 179.97438 * 17 15 14 23 23 H 0.96997 * 119.99686 * 359.97438 * 1 2 3 24 24 H 1.00898 * 110.99860 * 299.99572 * 11 9 7 25 25 H 1.00901 * 111.00125 * 63.94730 * 11 9 7 26 26 H 1.07994 * 120.08510 * 0.04714 * 13 12 9 27 27 H 1.08001 * 120.14955 * 180.35407 * 14 13 12 28 28 H 0.96700 * 114.00170 * 269.72906 * 16 15 14 29 29 H 1.09008 * 109.25018 * 221.99267 * 19 18 17 30 30 H 1.08999 * 109.25359 * 102.56768 * 19 18 17 31 31 H 1.08999 * 109.68384 * 291.38684 * 20 19 18 32 32 H 1.09002 * 109.71461 * 170.84492 * 20 19 18 33 33 H 1.09003 * 109.68418 * 170.41022 * 21 20 19 34 34 H 1.08995 * 109.71767 * 49.86639 * 21 20 19 35 35 H 1.09000 * 109.25120 * 282.81522 * 22 17 15 36 36 H 1.09000 * 109.24961 * 42.24682 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 1 3.8752 -0.6804 0.8889 11 7 4.0008 -0.5012 -1.2005 12 6 4.0140 -2.6148 -0.0023 13 6 4.4380 -3.1884 -1.1836 14 6 4.9031 -4.4890 -1.1879 15 6 4.9286 -5.2126 -0.0074 16 8 5.3792 -6.4947 -0.0110 17 6 4.5005 -4.6326 1.1852 18 6 4.0460 -3.3337 1.1859 19 6 3.5762 -2.6401 2.4379 20 6 3.2664 -3.6591 3.5326 21 6 4.4731 -4.5937 3.6787 22 6 4.5534 -5.4743 2.4333 23 1 -0.4849 0.8400 0.0004 24 1 3.6770 -0.9585 -2.0396 25 1 3.7313 0.4712 -1.1916 26 1 4.4101 -2.6205 -2.1018 27 1 5.2416 -4.9411 -2.1085 28 1 4.6890 -7.1538 -0.1666 29 1 2.6761 -2.0670 2.2152 30 1 4.3554 -1.9628 2.7875 31 1 2.3850 -4.2379 3.2565 32 1 3.0858 -3.1425 4.4753 33 1 4.3483 -5.2189 4.5629 34 1 5.3854 -4.0045 3.7715 35 1 3.7162 -6.1723 2.4317 36 1 5.4880 -6.0350 2.4493 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260338987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:33 Heat of formation + Delta-G solvation = -32.621077 kcal Electronic energy + Delta-G solvation = -18367.134194 eV Core-core repulsion = 15622.321108 eV Total energy + Delta-G solvation = -2744.813087 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.97986 -37.14442 -36.04675 -34.13397 -31.88337 -30.91317 -29.82490 -27.69674 -26.07326 -23.34760 -22.63685 -22.29692 -19.80640 -18.87598 -17.57506 -17.13373 -16.09696 -15.30870 -15.17704 -14.63262 -14.26169 -13.69627 -13.39542 -13.33380 -12.99549 -12.69050 -12.46819 -12.23571 -12.10596 -11.68350 -11.37827 -10.99835 -10.85538 -10.73709 -10.53435 -10.48774 -10.34644 -9.94141 -9.61978 -9.44744 -8.82285 -8.00924 -7.88774 -7.39969 -6.27622 -4.30853 1.87889 1.94711 3.09915 3.24736 3.24898 4.18973 4.19186 4.67019 4.99594 5.04006 5.10698 5.23427 5.50139 5.57827 5.65665 5.69935 5.85994 5.95597 5.97722 6.01965 6.13526 6.27553 6.33178 6.39139 6.44370 6.57577 6.68590 6.74993 6.95106 7.00163 7.12657 7.34576 7.45888 7.49177 8.02127 8.06516 8.24804 8.45176 8.80041 9.31443 10.84598 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.025705 B = 0.008134 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.007856 B = 3441.640879 C = 4083.887377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.870 3.130 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.206 3.794 10 H 0.054 0.946 11 N -0.851 5.851 12 C -0.031 4.031 13 C -0.102 4.102 14 C -0.150 4.150 15 C 0.071 3.929 16 O -0.501 6.501 17 C -0.107 4.107 18 C -0.056 4.056 19 C -0.089 4.089 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.069 4.069 23 H 0.266 0.734 24 H 0.331 0.669 25 H 0.317 0.683 26 H 0.126 0.874 27 H 0.117 0.883 28 H 0.378 0.622 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.385 -8.167 3.153 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.130 4.130 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.097 3.903 10 H 0.071 0.929 11 N -0.384 5.384 12 C -0.031 4.031 13 C -0.120 4.120 14 C -0.168 4.168 15 C 0.027 3.973 16 O -0.310 6.310 17 C -0.107 4.107 18 C -0.056 4.056 19 C -0.125 4.125 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.106 4.106 23 H 0.076 0.924 24 H 0.144 0.856 25 H 0.133 0.867 26 H 0.144 0.856 27 H 0.135 0.865 28 H 0.232 0.768 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.500 -7.958 3.543 12.171 hybrid contribution -1.193 0.832 -0.526 1.547 sum 7.307 -7.125 3.017 10.642 Atomic orbital electron populations 1.69892 1.06168 1.27196 1.49216 1.25029 0.94819 0.98935 0.94202 0.87046 0.80422 0.83980 0.78656 1.20176 1.21727 1.18341 1.21539 0.89379 0.94844 1.52256 0.90518 1.18508 0.93647 0.87612 0.90554 0.92866 1.59758 1.66947 1.05639 1.06103 1.20083 0.94404 0.96782 0.91881 1.20751 0.98795 0.93875 0.98584 1.21186 1.02774 0.95852 0.97004 1.18292 1.01489 0.85064 0.92418 1.84780 1.37453 1.14144 1.94648 1.19724 1.01365 0.94975 0.94645 1.19281 0.98390 0.92597 0.95363 1.20605 1.02977 0.97423 0.91544 1.21540 0.97811 0.97524 0.98600 1.21555 0.99085 0.98101 0.96856 1.20244 1.01795 0.96878 0.91729 0.92357 0.85605 0.86701 0.85636 0.86487 0.76819 0.87684 0.91468 0.91817 0.91926 0.92140 0.91925 0.91579 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 20.34 24.61 -169.99 -4.18 16.16 16 4 H -0.28 -6.22 7.01 56.52 0.40 -5.83 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.54 -14.25 7.90 -34.44 -0.27 -14.52 16 8 H 0.08 2.25 7.98 -52.49 -0.42 1.84 16 9 C 0.21 4.72 1.83 -70.02 -0.13 4.59 16 10 H 0.05 1.27 6.31 -51.93 -0.33 0.94 16 11 N -0.85 -18.36 8.61 -6.65 -0.06 -18.42 16 12 C -0.03 -0.65 5.04 -104.46 -0.53 -1.18 16 13 C -0.10 -1.95 9.23 -39.71 -0.37 -2.32 16 14 C -0.15 -2.59 9.98 -39.53 -0.39 -2.99 16 15 C 0.07 1.21 6.66 -39.07 -0.26 0.95 16 16 O -0.50 -7.21 12.53 -19.41 -0.24 -7.45 16 17 C -0.11 -1.86 5.75 -104.47 -0.60 -2.46 16 18 C -0.06 -1.08 5.73 -104.63 -0.60 -1.68 16 19 C -0.09 -1.62 4.54 -28.05 -0.13 -1.75 16 20 C -0.12 -1.76 5.98 -26.70 -0.16 -1.92 16 21 C -0.12 -1.58 5.98 -26.69 -0.16 -1.74 16 22 C -0.07 -0.99 5.28 -28.05 -0.15 -1.14 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.33 6.77 7.25 -39.29 -0.28 6.48 16 25 H 0.32 6.96 4.30 -39.29 -0.17 6.79 16 26 H 0.13 2.28 6.21 -52.49 -0.33 1.95 16 27 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.38 3.72 9.06 45.56 0.41 4.13 16 29 H 0.10 2.21 6.16 -51.92 -0.32 1.89 16 30 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 31 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.99 7.76 -51.93 -0.40 0.58 16 LS Contribution 279.88 15.07 4.22 4.22 Total: -1.00 -29.53 279.88 -7.30 -36.82 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -3.96 Total: 17.92 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -3.84 Total: -24.24 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.72 Total: -43.43 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.24 Total: -7.45 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.18 Total: 16.16 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.53 -7.30 -36.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.203 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds