Wall clock time and date at job start Mon Mar 30 2020 06:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99693 * 2 1 4 4 H 1.48493 * 109.47561 * 269.99935 * 3 2 1 5 5 H 1.48500 * 109.47433 * 30.00551 * 3 2 1 6 6 H 1.48505 * 109.46860 * 149.99908 * 3 2 1 7 7 C 1.37871 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00145 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00179 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.46927 * 60.00196 * 9 7 2 11 11 N 1.46897 * 109.47379 * 300.00545 * 9 7 2 12 12 C 1.50698 * 109.47556 * 180.02562 * 9 7 2 13 13 C 1.38004 * 119.66847 * 100.02236 * 12 9 7 14 14 C 1.38128 * 119.83320 * 179.79531 * 13 12 9 15 15 C 1.38484 * 119.70901 * 0.60894 * 14 13 12 16 16 O 1.35896 * 119.78941 * 179.65027 * 15 14 13 17 17 C 1.39357 * 120.42250 * 359.37481 * 15 14 13 18 18 C 1.37618 * 119.65433 * 0.21194 * 17 15 14 19 19 C 1.50635 * 122.54842 * 180.39073 * 18 17 15 20 20 C 1.52729 * 110.59558 * 342.27516 * 19 18 17 21 21 C 1.53330 * 108.37915 * 51.10827 * 20 19 18 22 22 C 1.50629 * 117.75541 * 179.97438 * 17 15 14 23 23 H 0.96997 * 119.99686 * 359.97438 * 1 2 3 24 24 H 1.00898 * 110.99860 * 299.99572 * 11 9 7 25 25 H 1.00901 * 111.00125 * 63.94730 * 11 9 7 26 26 H 1.07994 * 120.08510 * 0.04714 * 13 12 9 27 27 H 1.08001 * 120.14955 * 180.35407 * 14 13 12 28 28 H 0.96700 * 114.00170 * 269.72906 * 16 15 14 29 29 H 1.09008 * 109.25018 * 221.99267 * 19 18 17 30 30 H 1.08999 * 109.25359 * 102.56768 * 19 18 17 31 31 H 1.08999 * 109.68384 * 291.38684 * 20 19 18 32 32 H 1.09002 * 109.71461 * 170.84492 * 20 19 18 33 33 H 1.09003 * 109.68418 * 170.41022 * 21 20 19 34 34 H 1.08995 * 109.71767 * 49.86639 * 21 20 19 35 35 H 1.09000 * 109.25120 * 282.81522 * 22 17 15 36 36 H 1.09000 * 109.24961 * 42.24682 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 1 3.8752 -0.6804 0.8889 11 7 4.0008 -0.5012 -1.2005 12 6 4.0140 -2.6148 -0.0023 13 6 4.4380 -3.1884 -1.1836 14 6 4.9031 -4.4890 -1.1879 15 6 4.9286 -5.2126 -0.0074 16 8 5.3792 -6.4947 -0.0110 17 6 4.5005 -4.6326 1.1852 18 6 4.0460 -3.3337 1.1859 19 6 3.5762 -2.6401 2.4379 20 6 3.2664 -3.6591 3.5326 21 6 4.4731 -4.5937 3.6787 22 6 4.5534 -5.4743 2.4333 23 1 -0.4849 0.8400 0.0004 24 1 3.6770 -0.9585 -2.0396 25 1 3.7313 0.4712 -1.1916 26 1 4.4101 -2.6205 -2.1018 27 1 5.2416 -4.9411 -2.1085 28 1 4.6890 -7.1538 -0.1666 29 1 2.6761 -2.0670 2.2152 30 1 4.3554 -1.9628 2.7875 31 1 2.3850 -4.2379 3.2565 32 1 3.0858 -3.1425 4.4753 33 1 4.3483 -5.2189 4.5629 34 1 5.3854 -4.0045 3.7715 35 1 3.7162 -6.1723 2.4317 36 1 5.4880 -6.0350 2.4493 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260338987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:32 Heat of formation + Delta-G solvation = -53.906912 kcal Electronic energy + Delta-G solvation = -18368.057217 eV Core-core repulsion = 15622.321108 eV Total energy + Delta-G solvation = -2745.736110 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34611 -38.46706 -37.46613 -35.73816 -33.85589 -32.30112 -31.14778 -29.12385 -28.00342 -24.71953 -24.25305 -23.59386 -21.31038 -20.18627 -19.18586 -18.80099 -17.75415 -16.77092 -16.58806 -16.17725 -15.84261 -15.20696 -14.73159 -14.62385 -14.47531 -14.43675 -14.01153 -13.80027 -13.40102 -13.22596 -12.85423 -12.78058 -12.57515 -12.11072 -11.95658 -11.85501 -11.68892 -11.68152 -11.10142 -10.92381 -10.86012 -9.59835 -9.38323 -9.00773 -8.39170 -6.45931 0.46592 0.53665 1.22360 1.31279 1.39681 2.20250 2.78794 2.93379 3.42309 3.79089 3.83034 3.96589 4.08649 4.26138 4.30894 4.38625 4.46154 4.62320 4.66187 4.71278 4.92712 5.00929 5.06333 5.09473 5.15000 5.21919 5.28885 5.39514 5.45762 5.49562 5.56224 5.69031 5.93175 6.04268 6.11051 6.41291 6.56450 6.68500 6.94692 7.19449 8.76656 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.025705 B = 0.008134 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.007856 B = 3441.640879 C = 4083.887377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.020 3.980 3 Si 0.932 3.068 4 H -0.257 1.257 5 H -0.292 1.292 6 H -0.249 1.249 7 C -0.531 4.531 8 H 0.031 0.969 9 C 0.216 3.784 10 H 0.043 0.957 11 N -0.841 5.841 12 C -0.068 4.068 13 C -0.112 4.112 14 C -0.153 4.153 15 C 0.082 3.918 16 O -0.499 6.499 17 C -0.114 4.114 18 C -0.072 4.072 19 C -0.087 4.087 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.068 4.068 23 H 0.268 0.732 24 H 0.338 0.662 25 H 0.316 0.684 26 H 0.130 0.870 27 H 0.143 0.857 28 H 0.402 0.598 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.358 -9.358 3.528 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.182 1.182 5 H -0.219 1.219 6 H -0.174 1.174 7 C -0.571 4.571 8 H 0.049 0.951 9 C 0.107 3.893 10 H 0.060 0.940 11 N -0.375 5.375 12 C -0.068 4.068 13 C -0.130 4.130 14 C -0.171 4.171 15 C 0.037 3.963 16 O -0.311 6.311 17 C -0.114 4.114 18 C -0.073 4.073 19 C -0.124 4.124 20 C -0.151 4.151 21 C -0.150 4.150 22 C -0.104 4.104 23 H 0.077 0.923 24 H 0.151 0.849 25 H 0.131 0.869 26 H 0.147 0.853 27 H 0.161 0.839 28 H 0.260 0.740 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.481 -9.179 3.903 14.469 hybrid contribution -1.813 1.026 -0.656 2.184 sum 8.668 -8.152 3.247 12.335 Atomic orbital electron populations 1.70038 1.07985 1.28181 1.51302 1.25815 0.95488 1.02627 0.93970 0.86034 0.79230 0.79310 0.79621 1.18243 1.21879 1.17358 1.21635 0.91393 0.92965 1.51089 0.95055 1.18257 0.91079 0.89457 0.90536 0.93956 1.59721 1.66366 1.05452 1.05918 1.20079 0.97017 0.96145 0.93603 1.20870 0.99104 0.94964 0.98066 1.21441 1.02197 0.95066 0.98399 1.18371 0.99740 0.86141 0.92018 1.84716 1.38464 1.13374 1.94551 1.20091 1.00442 0.94396 0.96510 1.19487 0.99002 0.93660 0.95154 1.20528 1.01140 0.98122 0.92643 1.21525 0.98516 0.97144 0.97936 1.21540 0.97850 0.97870 0.97697 1.20325 1.02940 0.96703 0.90466 0.92292 0.84870 0.86861 0.85255 0.83945 0.74002 0.91604 0.91223 0.92586 0.90340 0.89100 0.92008 0.90160 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.39 13.96 21.45 0.30 -56.09 16 2 C 0.02 1.14 5.47 84.65 0.46 1.60 16 3 Si 0.93 42.44 24.61 68.60 1.69 44.13 16 4 H -0.26 -10.91 7.01 99.48 0.70 -10.21 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.53 -29.20 7.90 25.60 0.20 -29.00 16 8 H 0.03 1.96 7.98 -2.91 -0.02 1.94 16 9 C 0.22 10.12 1.83 43.42 0.08 10.20 16 10 H 0.04 2.06 6.31 -2.38 -0.02 2.05 16 11 N -0.84 -35.96 8.61 -174.96 -1.51 -37.47 16 12 C -0.07 -2.89 5.04 -19.76 -0.10 -2.99 16 13 C -0.11 -4.24 9.23 22.19 0.20 -4.04 16 14 C -0.15 -4.99 9.98 22.30 0.22 -4.77 16 15 C 0.08 2.57 6.66 22.60 0.15 2.72 16 16 O -0.50 -12.47 12.53 -92.38 -1.16 -13.63 16 17 C -0.11 -3.79 5.75 -19.76 -0.11 -3.90 16 18 C -0.07 -2.82 5.73 -19.87 -0.11 -2.94 16 19 C -0.09 -3.25 4.54 29.74 0.14 -3.11 16 20 C -0.11 -3.29 5.98 30.61 0.18 -3.11 16 21 C -0.11 -2.68 5.98 30.62 0.18 -2.49 16 22 C -0.07 -1.72 5.28 29.74 0.16 -1.57 16 23 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 24 H 0.34 13.72 7.25 -89.70 -0.65 13.07 16 25 H 0.32 13.50 4.30 -89.69 -0.39 13.11 16 26 H 0.13 4.64 6.21 -2.91 -0.02 4.62 16 27 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 28 H 0.40 6.27 9.06 -74.06 -0.67 5.60 16 29 H 0.07 2.93 6.16 -2.38 -0.01 2.92 16 30 H 0.07 2.47 8.13 -2.39 -0.02 2.45 16 31 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.98 7.76 -2.39 -0.02 1.96 16 Total: -1.00 -65.33 279.88 0.33 -65.00 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -0.65 Total: 41.45 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 1.65 Total: -43.39 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -1.21 Total: -93.56 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -1.16 Total: -13.63 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.69 Total: 44.13 kcal Total: -65.33 0.33 -65.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.093 kcal (2) G-P(sol) polarization free energy of solvation -65.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds