Wall clock time and date at job start Mon Mar 30 2020 06:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48501 * 109.47279 * 240.00491 * 3 2 1 5 5 H 1.48503 * 109.46871 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47039 * 120.00364 * 3 2 1 7 7 C 1.37882 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99485 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46610 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47344 * 54.99958 * 10 9 7 12 12 N 1.46896 * 109.47565 * 294.99901 * 10 9 7 13 13 C 1.50702 * 109.47038 * 174.99991 * 10 9 7 14 14 C 1.38254 * 120.00139 * 100.25534 * 13 10 9 15 15 C 1.38213 * 119.99891 * 180.27607 * 14 13 10 16 16 C 1.38254 * 120.00170 * 359.74771 * 15 14 13 17 17 C 1.38211 * 120.00038 * 359.97378 * 16 15 14 18 18 C 1.38213 * 119.99774 * 280.00106 * 13 10 9 19 19 C 1.50697 * 120.00362 * 359.97438 * 18 13 10 20 20 C 1.54036 * 113.81785 * 239.72924 * 19 18 13 21 21 O 1.44178 * 85.51721 * 223.19184 * 20 19 18 22 22 C 1.44178 * 93.33758 * 24.19298 * 21 20 19 23 23 H 0.96998 * 119.99735 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47029 * 60.00741 * 9 7 2 25 25 H 1.08992 * 109.47177 * 299.99523 * 9 7 2 26 26 H 1.00894 * 111.00621 * 176.04536 * 12 10 9 27 27 H 1.00904 * 110.99960 * 300.00558 * 12 10 9 28 28 H 1.08006 * 120.00406 * 0.04087 * 14 13 10 29 29 H 1.08006 * 119.99773 * 179.76372 * 15 14 13 30 30 H 1.07996 * 119.99818 * 180.02562 * 16 15 14 31 31 H 1.07997 * 120.00099 * 180.02562 * 17 16 15 32 32 H 1.09002 * 113.08088 * 11.62960 * 19 18 13 33 33 H 1.09006 * 113.86377 * 337.33960 * 20 19 18 34 34 H 1.08997 * 113.86599 * 109.04660 * 20 19 18 35 35 H 1.08997 * 113.86183 * 221.65572 * 22 21 20 36 36 H 1.09006 * 113.86665 * 89.95443 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 0.8413 12 7 3.0083 -3.6540 -1.2557 13 6 1.4958 -4.9637 0.1233 14 6 1.2584 -5.7342 -0.9998 15 6 0.5661 -6.9252 -0.8870 16 6 0.1156 -7.3485 0.3496 17 6 0.3579 -6.5810 1.4732 18 6 1.0505 -5.3896 1.3604 19 6 1.3147 -4.5529 2.5856 20 6 2.1382 -5.2767 3.6675 21 8 1.2012 -4.7052 4.6025 22 6 0.1645 -4.5691 3.6099 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.7160 -4.3731 -1.2534 27 1 2.3960 -3.7518 -2.0518 28 1 1.6106 -5.4038 -1.9658 29 1 0.3774 -7.5253 -1.7649 30 1 -0.4249 -8.2793 0.4377 31 1 0.0064 -6.9119 2.4393 32 1 1.6800 -3.5533 2.3497 33 1 2.0905 -6.3639 3.6042 34 1 3.1547 -4.8983 3.7749 35 1 -0.3844 -3.6294 3.6716 36 1 -0.4858 -5.4401 3.5290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260345448.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:38 Heat of formation + Delta-G solvation = 8.425103 kcal Electronic energy + Delta-G solvation = -18054.882579 eV Core-core repulsion = 15311.849388 eV Total energy + Delta-G solvation = -2743.033191 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66124 -38.75161 -35.41039 -32.49233 -32.23441 -29.74907 -28.34676 -27.81734 -26.35067 -24.50985 -22.69298 -21.92047 -19.64884 -19.58681 -17.08225 -16.28238 -16.22457 -15.53943 -15.32267 -15.12331 -14.66164 -14.23664 -14.11532 -13.52933 -12.80111 -12.77434 -12.53869 -12.36839 -12.04273 -11.46030 -11.21761 -11.04761 -10.97703 -10.69398 -10.57158 -10.41040 -10.17486 -9.64168 -9.41739 -9.10038 -8.57822 -8.31105 -8.17624 -7.98781 -5.92888 -3.92146 1.53461 1.63432 3.39618 3.43294 3.46946 3.86694 3.90163 4.53237 4.77712 4.89494 5.04751 5.15203 5.22171 5.28299 5.33607 5.40582 5.45224 5.47097 5.70748 5.74288 5.82444 6.08216 6.11973 6.24190 6.27184 6.31099 6.37197 6.61147 6.68501 6.78904 6.96927 7.23415 7.49980 7.68265 7.95386 8.07090 8.13959 8.49943 9.13702 9.70177 11.18537 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020127 B = 0.007506 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.855564 B = 3729.298180 C = 4554.847392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.052 3.948 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.497 4.497 8 H 0.062 0.938 9 C 0.039 3.961 10 C 0.128 3.872 11 H 0.080 0.920 12 N -0.823 5.823 13 C -0.086 4.086 14 C -0.128 4.128 15 C -0.118 4.118 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.077 4.077 19 C -0.120 4.120 20 C 0.043 3.957 21 O -0.383 6.383 22 C 0.042 3.958 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.023 0.977 26 H 0.322 0.678 27 H 0.335 0.665 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 -14.258 2.108 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.001 3.999 10 C 0.017 3.983 11 H 0.098 0.902 12 N -0.350 5.350 13 C -0.088 4.088 14 C -0.147 4.147 15 C -0.136 4.136 16 C -0.153 4.153 17 C -0.134 4.134 18 C -0.078 4.078 19 C -0.139 4.139 20 C -0.034 4.034 21 O -0.302 6.302 22 C -0.034 4.034 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.041 0.959 26 H 0.133 0.867 27 H 0.149 0.851 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.458 -13.302 2.588 13.630 hybrid contribution -0.139 -0.148 -0.486 0.527 sum 1.319 -13.450 2.102 13.677 Atomic orbital electron populations 1.69960 1.05989 1.26508 1.51675 1.25013 0.94802 0.99153 0.95810 0.86655 0.79490 0.83235 0.78557 1.20329 1.21597 1.20399 1.21117 0.93329 0.90043 1.49076 0.92019 1.19139 0.92779 0.90530 0.97402 1.20852 0.94854 0.90451 0.92180 0.90205 1.58804 1.17852 1.54258 1.04107 1.21306 0.97497 0.97634 0.92402 1.20993 1.00298 0.95048 0.98317 1.21047 0.98647 0.96661 0.97284 1.20965 1.01538 0.99946 0.92862 1.20956 0.99235 0.94788 0.98400 1.19555 0.99035 0.94964 0.94251 1.23502 0.96638 1.01428 0.92289 1.24024 0.95174 0.97804 0.86390 1.89652 1.25838 1.82262 1.32433 1.24092 0.91762 1.02420 0.85168 0.93167 0.96643 0.95928 0.86667 0.85127 0.86396 0.86626 0.86622 0.86521 0.85256 0.90481 0.89077 0.88540 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.50 -13.75 8.84 -34.44 -0.30 -14.06 16 8 H 0.06 1.71 7.74 -52.48 -0.41 1.30 16 9 C 0.04 0.96 4.29 -27.88 -0.12 0.84 16 10 C 0.13 2.50 2.23 -68.87 -0.15 2.35 16 11 H 0.08 1.59 6.96 -51.93 -0.36 1.23 16 12 N -0.82 -14.77 8.42 -5.65 -0.05 -14.82 16 13 C -0.09 -1.47 5.08 -104.62 -0.53 -2.00 16 14 C -0.13 -1.95 9.25 -39.58 -0.37 -2.32 16 15 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 16 C -0.14 -1.74 10.05 -39.59 -0.40 -2.14 16 17 C -0.12 -1.59 8.64 -39.58 -0.34 -1.94 16 18 C -0.08 -1.22 5.30 -104.62 -0.55 -1.78 16 19 C -0.12 -1.90 3.39 -90.70 -0.31 -2.21 16 20 C 0.04 0.59 8.68 37.61 0.33 0.92 16 21 O -0.38 -6.14 12.45 -35.23 -0.44 -6.58 16 22 C 0.04 0.63 8.58 37.60 0.32 0.95 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.59 6.92 -51.93 -0.36 0.23 16 26 H 0.32 4.84 9.05 -39.29 -0.36 4.49 16 27 H 0.33 5.77 7.30 -39.29 -0.29 5.49 16 28 H 0.12 1.65 6.25 -52.48 -0.33 1.32 16 29 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.38 6.63 -52.49 -0.35 1.03 16 32 H 0.13 2.39 5.32 -51.93 -0.28 2.12 16 33 H 0.08 0.92 7.76 -51.93 -0.40 0.52 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.01 6.30 -51.93 -0.33 0.69 16 LS Contribution 293.91 15.07 4.43 4.43 Total: -1.00 -30.78 293.91 -7.96 -38.74 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.70 Total: 9.41 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.92 Total: -21.98 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.69 Total: -40.98 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.44 Total: -6.58 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.78 -7.96 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345448.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.170 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds