Wall clock time and date at job start Mon Mar 30 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48501 * 109.47279 * 240.00491 * 3 2 1 5 5 H 1.48503 * 109.46871 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47039 * 120.00364 * 3 2 1 7 7 C 1.37882 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99485 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46610 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47344 * 54.99958 * 10 9 7 12 12 N 1.46896 * 109.47565 * 294.99901 * 10 9 7 13 13 C 1.50702 * 109.47038 * 174.99991 * 10 9 7 14 14 C 1.38254 * 120.00139 * 100.25534 * 13 10 9 15 15 C 1.38213 * 119.99891 * 180.27607 * 14 13 10 16 16 C 1.38254 * 120.00170 * 359.74771 * 15 14 13 17 17 C 1.38211 * 120.00038 * 359.97378 * 16 15 14 18 18 C 1.38213 * 119.99774 * 280.00106 * 13 10 9 19 19 C 1.50697 * 120.00362 * 359.97438 * 18 13 10 20 20 C 1.54036 * 113.81785 * 239.72924 * 19 18 13 21 21 O 1.44178 * 85.51721 * 223.19184 * 20 19 18 22 22 C 1.44178 * 93.33758 * 24.19298 * 21 20 19 23 23 H 0.96998 * 119.99735 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47029 * 60.00741 * 9 7 2 25 25 H 1.08992 * 109.47177 * 299.99523 * 9 7 2 26 26 H 1.00894 * 111.00621 * 176.04536 * 12 10 9 27 27 H 1.00904 * 110.99960 * 300.00558 * 12 10 9 28 28 H 1.08006 * 120.00406 * 0.04087 * 14 13 10 29 29 H 1.08006 * 119.99773 * 179.76372 * 15 14 13 30 30 H 1.07996 * 119.99818 * 180.02562 * 16 15 14 31 31 H 1.07997 * 120.00099 * 180.02562 * 17 16 15 32 32 H 1.09002 * 113.08088 * 11.62960 * 19 18 13 33 33 H 1.09006 * 113.86377 * 337.33960 * 20 19 18 34 34 H 1.08997 * 113.86599 * 109.04660 * 20 19 18 35 35 H 1.08997 * 113.86183 * 221.65572 * 22 21 20 36 36 H 1.09006 * 113.86665 * 89.95443 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 0.8413 12 7 3.0083 -3.6540 -1.2557 13 6 1.4958 -4.9637 0.1233 14 6 1.2584 -5.7342 -0.9998 15 6 0.5661 -6.9252 -0.8870 16 6 0.1156 -7.3485 0.3496 17 6 0.3579 -6.5810 1.4732 18 6 1.0505 -5.3896 1.3604 19 6 1.3147 -4.5529 2.5856 20 6 2.1382 -5.2767 3.6675 21 8 1.2012 -4.7052 4.6025 22 6 0.1645 -4.5691 3.6099 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.7160 -4.3731 -1.2534 27 1 2.3960 -3.7518 -2.0518 28 1 1.6106 -5.4038 -1.9658 29 1 0.3774 -7.5253 -1.7649 30 1 -0.4249 -8.2793 0.4377 31 1 0.0064 -6.9119 2.4393 32 1 1.6800 -3.5533 2.3497 33 1 2.0905 -6.3639 3.6042 34 1 3.1547 -4.8983 3.7749 35 1 -0.3844 -3.6294 3.6716 36 1 -0.4858 -5.4401 3.5290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260345448.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:37 Heat of formation + Delta-G solvation = -12.288068 kcal Electronic energy + Delta-G solvation = -18055.780769 eV Core-core repulsion = 15311.849388 eV Total energy + Delta-G solvation = -2743.931381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.84758 -39.94886 -36.92181 -34.55650 -33.40913 -30.96906 -30.23708 -29.01507 -27.48833 -26.28382 -23.94237 -23.43615 -21.11094 -20.74734 -18.62707 -17.92904 -17.50193 -16.89787 -16.70992 -16.40269 -16.32156 -15.73911 -15.26795 -14.84910 -14.35144 -14.21692 -13.83455 -13.61394 -13.51409 -13.18823 -12.90275 -12.52646 -12.46223 -12.22277 -12.18202 -12.01835 -11.51081 -11.41907 -11.19652 -10.59237 -10.50717 -9.70456 -9.47125 -9.37613 -8.12816 -6.19074 0.42782 0.49839 1.40941 1.43469 1.51054 2.45222 2.70044 2.78179 3.20193 3.60307 3.72197 3.86848 4.00370 4.02668 4.14116 4.24161 4.28195 4.34675 4.50378 4.62692 4.68380 4.70850 4.91503 4.93673 5.12016 5.13070 5.15987 5.20541 5.47192 5.54047 5.61268 5.65938 5.77223 5.87471 6.13758 6.29376 6.50194 6.79908 6.94620 7.47429 8.98339 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020127 B = 0.007506 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.855564 B = 3729.298180 C = 4554.847392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.051 3.949 10 C 0.145 3.855 11 H 0.069 0.931 12 N -0.831 5.831 13 C -0.115 4.115 14 C -0.137 4.137 15 C -0.119 4.119 16 C -0.126 4.126 17 C -0.118 4.118 18 C -0.087 4.087 19 C -0.128 4.128 20 C 0.053 3.947 21 O -0.403 6.403 22 C 0.045 3.955 23 H 0.259 0.741 24 H -0.017 1.017 25 H -0.002 1.002 26 H 0.341 0.659 27 H 0.338 0.662 28 H 0.124 0.876 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.141 0.859 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -16.284 2.050 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.014 3.986 10 C 0.033 3.967 11 H 0.087 0.913 12 N -0.361 5.361 13 C -0.117 4.117 14 C -0.155 4.155 15 C -0.137 4.137 16 C -0.144 4.144 17 C -0.135 4.135 18 C -0.088 4.088 19 C -0.147 4.147 20 C -0.023 4.023 21 O -0.322 6.322 22 C -0.032 4.032 23 H 0.068 0.932 24 H 0.002 0.998 25 H 0.017 0.983 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.141 0.859 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.766 -15.344 2.527 15.651 hybrid contribution -0.251 0.413 -0.483 0.684 sum 1.515 -14.931 2.044 15.146 Atomic orbital electron populations 1.70090 1.07515 1.27309 1.52858 1.25864 0.95648 1.02850 0.95585 0.85620 0.78281 0.78915 0.78898 1.19613 1.21182 1.19545 1.21473 0.93354 0.91543 1.48317 0.92356 1.18890 0.93049 0.92119 0.94545 1.20314 0.93686 0.90208 0.92453 0.91330 1.58685 1.18325 1.55494 1.03600 1.21057 0.99477 0.97148 0.94003 1.21160 1.00679 0.95791 0.97882 1.21413 0.97513 0.95946 0.98856 1.21421 1.00193 1.00683 0.92075 1.21219 0.98450 0.93812 1.00061 1.19636 0.99677 0.95949 0.93524 1.23376 0.97873 1.00048 0.93383 1.24163 0.94895 0.98998 0.84269 1.89623 1.26628 1.82787 1.33211 1.24178 0.91682 1.02940 0.84361 0.93194 0.99827 0.98338 0.84581 0.84745 0.85857 0.83700 0.83115 0.84165 0.89102 0.87802 0.88486 0.90033 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.51 -29.07 8.84 25.60 0.23 -28.85 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.05 2.67 4.29 29.85 0.13 2.80 16 10 C 0.15 5.86 2.23 44.17 0.10 5.96 16 11 H 0.07 2.87 6.96 -2.39 -0.02 2.85 16 12 N -0.83 -30.18 8.42 -171.80 -1.45 -31.62 16 13 C -0.11 -3.92 5.08 -19.87 -0.10 -4.02 16 14 C -0.14 -4.00 9.25 22.27 0.21 -3.79 16 15 C -0.12 -2.82 10.05 22.27 0.22 -2.59 16 16 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 17 C -0.12 -2.89 8.64 22.27 0.19 -2.70 16 18 C -0.09 -2.70 5.30 -19.87 -0.11 -2.80 16 19 C -0.13 -4.12 3.39 -10.84 -0.04 -4.15 16 20 C 0.05 1.40 8.68 72.27 0.63 2.03 16 21 O -0.40 -12.70 12.45 -148.98 -1.86 -14.55 16 22 C 0.04 1.32 8.58 72.27 0.62 1.94 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 24 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H 0.00 -0.09 6.92 -2.39 -0.02 -0.11 16 26 H 0.34 10.12 9.05 -89.70 -0.81 9.31 16 27 H 0.34 11.81 7.30 -89.69 -0.65 11.16 16 28 H 0.12 3.34 6.25 -2.91 -0.02 3.32 16 29 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.14 2.73 6.63 -2.91 -0.02 2.71 16 32 H 0.09 3.60 5.32 -2.39 -0.01 3.59 16 33 H 0.10 2.19 7.76 -2.38 -0.02 2.17 16 34 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.11 2.53 6.30 -2.38 -0.02 2.51 16 Total: -1.00 -67.96 293.91 1.41 -66.55 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.36 Total: 27.56 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 2.77 Total: -38.40 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -1.16 Total: -88.95 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.86 Total: -14.55 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -67.96 1.41 -66.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345448.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.258 kcal (2) G-P(sol) polarization free energy of solvation -67.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds