Wall clock time and date at job start Mon Mar 30 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47341 * 300.00286 * 3 2 1 6 6 H 1.48499 * 109.47015 * 60.00381 * 3 2 1 7 7 C 1.37877 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47250 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47106 * 54.99262 * 10 9 7 12 12 N 1.46907 * 109.46992 * 294.99710 * 10 9 7 13 13 C 1.50700 * 109.47543 * 175.00005 * 10 9 7 14 14 C 1.38160 * 120.06647 * 99.99679 * 13 10 9 15 15 C 1.38133 * 119.99559 * 180.02562 * 14 13 10 16 16 C 1.38538 * 120.33345 * 0.27514 * 15 14 13 17 17 C 1.38130 * 119.88289 * 359.47805 * 16 15 14 18 18 C 1.38610 * 120.06049 * 280.02270 * 13 10 9 19 19 O 1.35902 * 119.95065 * 359.97438 * 18 13 10 20 20 C 1.51363 * 109.78246 * 180.26828 * 17 16 15 21 21 C 1.54668 * 105.07176 * 342.51693 * 20 17 16 22 22 C 1.51378 * 130.35715 * 179.73055 * 16 15 14 23 23 H 0.97010 * 119.99880 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47824 * 60.00053 * 9 7 2 25 25 H 1.09000 * 109.47281 * 299.99970 * 9 7 2 26 26 H 1.00899 * 110.99550 * 299.99987 * 12 10 9 27 27 H 1.00899 * 110.99593 * 63.95531 * 12 10 9 28 28 H 1.08001 * 120.00016 * 359.97438 * 14 13 10 29 29 H 1.08002 * 119.82943 * 179.97438 * 15 14 13 30 30 H 0.96696 * 113.99951 * 89.99989 * 19 18 13 31 31 H 1.09001 * 110.30395 * 101.98382 * 20 17 16 32 32 H 1.09006 * 110.30250 * 224.13827 * 20 17 16 33 33 H 1.08999 * 111.21736 * 268.41891 * 21 20 17 34 34 H 1.09001 * 110.74547 * 144.83177 * 21 20 17 35 35 H 1.09001 * 110.30532 * 316.12606 * 22 16 15 36 36 H 1.09007 * 110.30257 * 78.27454 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9293 -3.5552 0.8412 12 7 3.0082 -3.6539 -1.2559 13 6 1.4958 -4.9637 0.1233 14 6 1.2531 -5.7321 -0.9989 15 6 0.5656 -6.9247 -0.8838 16 6 0.1114 -7.3539 0.3526 17 6 0.3560 -6.5916 1.4782 18 6 1.0481 -5.3919 1.3633 19 8 1.2860 -4.6372 2.4682 20 6 -0.2311 -7.2728 2.6958 21 6 -1.2404 -8.3012 2.1337 22 6 -0.6585 -8.5997 0.7356 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5570 0.8897 26 1 2.3958 -3.7517 -2.0518 27 1 3.5699 -2.8193 -1.3321 28 1 1.6002 -5.4000 -1.9662 29 1 0.3771 -7.5231 -1.7629 30 1 0.5922 -3.9915 2.6602 31 1 0.5533 -7.7714 3.2652 32 1 -0.7507 -6.5470 3.3215 33 1 -2.2388 -7.8711 2.0541 34 1 -1.2560 -9.2019 2.7474 35 1 -1.4624 -8.7818 0.0223 36 1 0.0105 -9.4591 0.7801 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260385592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:15 Heat of formation + Delta-G solvation = -37.026673 kcal Electronic energy + Delta-G solvation = -17817.695393 eV Core-core repulsion = 15072.691266 eV Total energy + Delta-G solvation = -2745.004128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15342 -37.21072 -36.02361 -34.12137 -32.34766 -29.95224 -28.48055 -28.12862 -26.97124 -24.12785 -22.26246 -21.33127 -20.65717 -19.11215 -17.48570 -16.78686 -15.97815 -15.73333 -15.11485 -14.65474 -14.37956 -13.66901 -13.55437 -13.24543 -12.78898 -12.73446 -12.39309 -12.12332 -11.99709 -11.53072 -11.39280 -11.12285 -11.08276 -10.91696 -10.75156 -10.58173 -10.22947 -10.05244 -9.86689 -9.15077 -8.49986 -8.15332 -8.11985 -7.60075 -6.10862 -4.14912 1.66617 1.72382 3.24833 3.33160 3.36994 3.98246 4.37427 4.53885 4.64884 4.80484 5.01554 5.18810 5.24726 5.29298 5.45076 5.60383 5.73224 5.75852 5.78181 5.82928 5.96778 6.01397 6.18695 6.26736 6.38161 6.54261 6.71555 6.78918 6.85631 7.04107 7.24199 7.40519 7.57330 7.83523 8.04652 8.17082 8.20266 8.33109 8.91592 9.50507 10.99804 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035332 B = 0.005538 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.284932 B = 5054.970068 C = 5388.310956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.005 3.995 10 C 0.130 3.870 11 H 0.084 0.916 12 N -0.841 5.841 13 C -0.076 4.076 14 C -0.095 4.095 15 C -0.120 4.120 16 C -0.104 4.104 17 C -0.128 4.128 18 C 0.120 3.880 19 O -0.496 6.496 20 C -0.072 4.072 21 C -0.121 4.121 22 C -0.077 4.077 23 H 0.261 0.739 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.328 0.672 27 H 0.347 0.653 28 H 0.129 0.871 29 H 0.115 0.885 30 H 0.390 0.610 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 -14.355 1.539 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.033 4.033 10 C 0.018 3.982 11 H 0.102 0.898 12 N -0.370 5.370 13 C -0.077 4.077 14 C -0.114 4.114 15 C -0.138 4.138 16 C -0.104 4.104 17 C -0.129 4.129 18 C 0.075 3.925 19 O -0.306 6.306 20 C -0.109 4.109 21 C -0.158 4.158 22 C -0.114 4.114 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.139 0.861 27 H 0.160 0.840 28 H 0.147 0.853 29 H 0.133 0.867 30 H 0.246 0.754 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.318 -15.221 1.870 15.392 hybrid contribution -0.618 2.266 -0.265 2.364 sum -1.936 -12.954 1.605 13.196 Atomic orbital electron populations 1.69978 1.06112 1.26651 1.50383 1.25012 0.94823 0.99325 0.95040 0.86526 0.80177 0.83654 0.77609 1.19614 1.21042 1.20968 1.21191 0.92983 0.90716 1.51188 0.92422 1.19726 0.94356 0.91798 0.97441 1.20388 0.94723 0.90157 0.92901 0.89843 1.59277 1.27944 1.45877 1.03871 1.20419 0.98224 0.97226 0.91789 1.20774 0.98045 0.93879 0.98683 1.20547 1.00047 0.97043 0.96142 1.20320 1.00248 0.96711 0.93125 1.20728 1.00031 0.95872 0.96227 1.17850 0.97973 0.90690 0.85973 1.84714 1.49671 1.52944 1.43299 1.20934 0.97651 0.97103 0.95218 1.22353 0.98736 0.98910 0.95833 1.20983 0.98410 0.95237 0.96786 0.92965 0.96638 0.96606 0.86054 0.83968 0.85315 0.86668 0.75365 0.90511 0.91125 0.91045 0.90919 0.91083 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.09 8.55 -34.44 -0.29 -14.38 16 8 H 0.06 1.52 7.14 -52.49 -0.38 1.14 16 9 C 0.01 0.13 4.60 -27.89 -0.13 0.00 16 10 C 0.13 2.74 2.64 -68.86 -0.18 2.56 16 11 H 0.08 1.90 7.85 -51.93 -0.41 1.49 16 12 N -0.84 -16.10 8.67 -5.65 -0.05 -16.15 16 13 C -0.08 -1.47 5.10 -104.51 -0.53 -2.00 16 14 C -0.10 -1.65 9.25 -39.65 -0.37 -2.02 16 15 C -0.12 -1.82 10.04 -39.51 -0.40 -2.22 16 16 C -0.10 -1.55 6.13 -104.22 -0.64 -2.19 16 17 C -0.13 -2.07 6.11 -104.06 -0.64 -2.70 16 18 C 0.12 2.23 6.68 -39.17 -0.26 1.97 16 19 O -0.50 -9.03 12.59 -19.43 -0.24 -9.28 16 20 C -0.07 -0.92 6.72 -26.68 -0.18 -1.10 16 21 C -0.12 -1.25 7.10 -25.15 -0.18 -1.43 16 22 C -0.08 -0.87 6.76 -26.84 -0.18 -1.05 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.41 7.61 -51.93 -0.40 0.02 16 26 H 0.33 5.91 7.29 -39.29 -0.29 5.62 16 27 H 0.35 6.75 7.90 -39.29 -0.31 6.44 16 28 H 0.13 2.07 6.25 -52.49 -0.33 1.74 16 29 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.39 6.14 8.62 45.56 0.39 6.54 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -30.34 296.57 -8.41 -38.75 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -4.23 Total: 14.40 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -4.07 Total: -23.00 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.69 Total: -41.49 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.24 Total: -9.28 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.34 -8.41 -38.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.726 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds