Wall clock time and date at job start Mon Mar 30 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47341 * 300.00286 * 3 2 1 6 6 H 1.48499 * 109.47015 * 60.00381 * 3 2 1 7 7 C 1.37877 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47250 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47106 * 54.99262 * 10 9 7 12 12 N 1.46907 * 109.46992 * 294.99710 * 10 9 7 13 13 C 1.50700 * 109.47543 * 175.00005 * 10 9 7 14 14 C 1.38160 * 120.06647 * 99.99679 * 13 10 9 15 15 C 1.38133 * 119.99559 * 180.02562 * 14 13 10 16 16 C 1.38538 * 120.33345 * 0.27514 * 15 14 13 17 17 C 1.38130 * 119.88289 * 359.47805 * 16 15 14 18 18 C 1.38610 * 120.06049 * 280.02270 * 13 10 9 19 19 O 1.35902 * 119.95065 * 359.97438 * 18 13 10 20 20 C 1.51363 * 109.78246 * 180.26828 * 17 16 15 21 21 C 1.54668 * 105.07176 * 342.51693 * 20 17 16 22 22 C 1.51378 * 130.35715 * 179.73055 * 16 15 14 23 23 H 0.97010 * 119.99880 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47824 * 60.00053 * 9 7 2 25 25 H 1.09000 * 109.47281 * 299.99970 * 9 7 2 26 26 H 1.00899 * 110.99550 * 299.99987 * 12 10 9 27 27 H 1.00899 * 110.99593 * 63.95531 * 12 10 9 28 28 H 1.08001 * 120.00016 * 359.97438 * 14 13 10 29 29 H 1.08002 * 119.82943 * 179.97438 * 15 14 13 30 30 H 0.96696 * 113.99951 * 89.99989 * 19 18 13 31 31 H 1.09001 * 110.30395 * 101.98382 * 20 17 16 32 32 H 1.09006 * 110.30250 * 224.13827 * 20 17 16 33 33 H 1.08999 * 111.21736 * 268.41891 * 21 20 17 34 34 H 1.09001 * 110.74547 * 144.83177 * 21 20 17 35 35 H 1.09001 * 110.30532 * 316.12606 * 22 16 15 36 36 H 1.09007 * 110.30257 * 78.27454 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9293 -3.5552 0.8412 12 7 3.0082 -3.6539 -1.2559 13 6 1.4958 -4.9637 0.1233 14 6 1.2531 -5.7321 -0.9989 15 6 0.5656 -6.9247 -0.8838 16 6 0.1114 -7.3539 0.3526 17 6 0.3560 -6.5916 1.4782 18 6 1.0481 -5.3919 1.3633 19 8 1.2860 -4.6372 2.4682 20 6 -0.2311 -7.2728 2.6958 21 6 -1.2404 -8.3012 2.1337 22 6 -0.6585 -8.5997 0.7356 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5570 0.8897 26 1 2.3958 -3.7517 -2.0518 27 1 3.5699 -2.8193 -1.3321 28 1 1.6002 -5.4000 -1.9662 29 1 0.3771 -7.5231 -1.7629 30 1 0.5922 -3.9915 2.6602 31 1 0.5533 -7.7714 3.2652 32 1 -0.7507 -6.5470 3.3215 33 1 -2.2388 -7.8711 2.0541 34 1 -1.2560 -9.2019 2.7474 35 1 -1.4624 -8.7818 0.0223 36 1 0.0105 -9.4591 0.7801 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260385592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:14 Heat of formation + Delta-G solvation = -57.593080 kcal Electronic energy + Delta-G solvation = -17818.587220 eV Core-core repulsion = 15072.691266 eV Total energy + Delta-G solvation = -2745.895954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40836 -38.50204 -37.53826 -35.61573 -34.27406 -31.17904 -30.01380 -29.69054 -28.21057 -25.92764 -23.55742 -22.92425 -21.69264 -20.57820 -18.89173 -18.68344 -17.37244 -17.02948 -16.60795 -16.35413 -15.68163 -15.02901 -14.99003 -14.74580 -14.43478 -14.12610 -13.74382 -13.64515 -13.30559 -13.13693 -12.85063 -12.55259 -12.50648 -12.27480 -12.01792 -12.00323 -11.87046 -11.52703 -11.47443 -11.05962 -10.64411 -9.62689 -9.40393 -9.12995 -8.24429 -6.36159 0.36232 0.43416 1.37138 1.38836 1.51184 2.36919 2.69428 3.08667 3.43216 3.46136 3.69081 3.84863 4.12970 4.20419 4.22790 4.37047 4.55928 4.60124 4.66065 4.82868 4.85608 4.93955 4.95527 5.09172 5.20870 5.25241 5.29503 5.36569 5.45170 5.52599 5.63949 5.69694 5.73982 6.00165 6.13699 6.36416 6.67663 6.78932 6.81389 7.33714 8.86643 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035332 B = 0.005538 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.284932 B = 5054.970068 C = 5388.310956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.018 3.982 10 C 0.147 3.853 11 H 0.061 0.939 12 N -0.829 5.829 13 C -0.110 4.110 14 C -0.105 4.105 15 C -0.120 4.120 16 C -0.102 4.102 17 C -0.141 4.141 18 C 0.095 3.905 19 O -0.507 6.507 20 C -0.075 4.075 21 C -0.113 4.113 22 C -0.075 4.075 23 H 0.263 0.737 24 H -0.011 1.011 25 H -0.008 1.008 26 H 0.335 0.665 27 H 0.345 0.655 28 H 0.135 0.865 29 H 0.148 0.852 30 H 0.394 0.606 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -16.046 1.287 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.079 0.921 9 C -0.020 4.020 10 C 0.035 3.965 11 H 0.079 0.921 12 N -0.358 5.358 13 C -0.111 4.111 14 C -0.124 4.124 15 C -0.138 4.138 16 C -0.102 4.102 17 C -0.142 4.142 18 C 0.050 3.950 19 O -0.319 6.319 20 C -0.112 4.112 21 C -0.150 4.150 22 C -0.112 4.112 23 H 0.072 0.928 24 H 0.007 0.993 25 H 0.010 0.990 26 H 0.148 0.852 27 H 0.158 0.842 28 H 0.153 0.847 29 H 0.166 0.834 30 H 0.251 0.749 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.474 -16.926 1.611 17.066 hybrid contribution -0.600 2.715 -0.182 2.787 sum -2.074 -14.211 1.430 14.432 Atomic orbital electron populations 1.70104 1.07765 1.27679 1.51459 1.25894 0.95641 1.03107 0.94597 0.85426 0.79166 0.78982 0.77633 1.18588 1.20482 1.20667 1.21543 0.93336 0.91745 1.50685 0.92060 1.19560 0.94381 0.93194 0.94883 1.19988 0.93421 0.90184 0.92896 0.92054 1.59254 1.27567 1.45491 1.03466 1.20370 1.00198 0.97171 0.93316 1.20948 0.98520 0.94706 0.98183 1.20901 0.98810 0.96335 0.97706 1.20919 0.99124 0.97729 0.92440 1.21161 0.99384 0.95095 0.98547 1.18165 0.99213 0.91914 0.85681 1.84676 1.50322 1.53313 1.43543 1.21064 0.98409 0.97645 0.94083 1.22386 0.97924 0.99163 0.95552 1.21111 0.98824 0.93699 0.97541 0.92805 0.99285 0.98993 0.85194 0.84213 0.84689 0.83434 0.74905 0.89896 0.91189 0.90635 0.88101 0.89161 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.54 -29.56 8.55 25.60 0.22 -29.34 16 8 H 0.06 3.27 7.14 -2.91 -0.02 3.25 16 9 C 0.02 0.96 4.60 29.85 0.14 1.10 16 10 C 0.15 6.47 2.64 44.17 0.12 6.59 16 11 H 0.06 2.94 7.85 -2.39 -0.02 2.92 16 12 N -0.83 -32.31 8.67 -171.79 -1.49 -33.80 16 13 C -0.11 -4.37 5.10 -19.79 -0.10 -4.47 16 14 C -0.11 -3.61 9.25 22.23 0.21 -3.40 16 15 C -0.12 -3.41 10.04 22.32 0.22 -3.19 16 16 C -0.10 -2.81 6.13 -19.60 -0.12 -2.93 16 17 C -0.14 -4.45 6.11 -19.50 -0.12 -4.57 16 18 C 0.10 3.62 6.68 22.54 0.15 3.77 16 19 O -0.51 -19.45 12.59 -92.45 -1.16 -20.62 16 20 C -0.08 -1.78 6.72 30.63 0.21 -1.58 16 21 C -0.11 -1.94 7.10 31.62 0.22 -1.71 16 22 C -0.08 -1.39 6.76 30.52 0.21 -1.18 16 23 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 24 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 25 H -0.01 -0.47 7.61 -2.39 -0.02 -0.48 16 26 H 0.34 12.25 7.29 -89.70 -0.65 11.59 16 27 H 0.34 13.60 7.90 -89.69 -0.71 12.89 16 28 H 0.14 4.29 6.25 -2.91 -0.02 4.27 16 29 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.39 13.47 8.62 -74.06 -0.64 12.83 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -66.38 296.57 0.58 -65.79 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.89 Total: 38.28 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 1.81 Total: -40.13 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -1.20 Total: -89.11 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.16 Total: -20.62 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -66.38 0.58 -65.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.200 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds