Wall clock time and date at job start Mon Mar 30 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29835 * 126.33010 * 2 1 4 4 O 1.41325 * 109.71741 * 180.02562 * 3 2 1 5 5 C 1.34772 * 109.41587 * 0.02562 * 4 3 2 6 6 N 1.32564 * 133.11402 * 180.02562 * 5 4 3 7 7 C 1.32264 * 121.46327 * 179.97438 * 6 5 4 8 8 N 1.38688 * 119.34002 * 179.72176 * 7 6 5 9 9 C 1.46508 * 119.99956 * 180.02562 * 8 7 6 10 10 H 1.08991 * 109.46905 * 34.99926 * 9 8 7 11 11 C 1.53004 * 109.46621 * 274.99926 * 9 8 7 12 12 C 1.50707 * 109.46882 * 155.00191 * 9 8 7 13 13 H 1.07997 * 120.00180 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99691 * 179.97438 * 12 9 8 15 15 N 1.31522 * 120.00174 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00064 * 180.02562 * 14 12 9 17 17 H 1.48491 * 109.46868 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47417 * 119.99989 * 16 14 12 19 19 H 1.48502 * 109.47012 * 240.00036 * 16 14 12 20 20 C 1.39599 * 121.32142 * 0.02562 * 7 6 5 21 21 C 1.36803 * 119.47932 * 0.03347 * 20 7 6 22 22 C 1.40072 * 118.28821 * 359.92981 * 21 20 7 23 23 H 1.08992 * 109.47328 * 269.99649 * 1 2 3 24 24 H 1.08999 * 109.47238 * 30.00062 * 1 2 3 25 25 H 1.09009 * 109.46961 * 149.99862 * 1 2 3 26 26 H 0.96998 * 120.00387 * 359.97438 * 8 7 6 27 27 H 1.08994 * 109.47241 * 60.00403 * 11 9 8 28 28 H 1.09006 * 109.46472 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.47046 * 299.99792 * 11 9 8 30 30 H 0.96998 * 120.00055 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.25471 * 179.97438 * 20 7 6 32 32 H 1.08007 * 120.85356 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0460 0.0000 4 8 3.6304 0.6419 -0.0006 5 6 3.6964 -0.7042 -0.0015 6 7 4.7072 -1.5618 -0.0019 7 6 4.5038 -2.8687 -0.0024 8 7 5.5938 -3.7261 -0.0087 9 6 5.3852 -5.1763 -0.0099 10 1 4.4976 -5.4151 -0.5955 11 6 5.1947 -5.6652 1.4274 12 6 6.5855 -5.8560 -0.6168 13 1 7.4201 -5.2667 -0.9671 14 6 6.6182 -7.2300 -0.7250 15 7 5.6021 -7.9477 -0.2980 16 14 8.1063 -8.0727 -1.4767 17 1 9.1059 -7.0493 -1.8748 18 1 8.7098 -8.9934 -0.4801 19 1 7.6858 -8.8451 -2.6733 20 6 3.2138 -3.4023 -0.0031 21 6 2.1365 -2.5592 -0.0039 22 6 2.3739 -1.1787 -0.0026 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 6.4944 -3.3658 -0.0130 27 1 4.3266 -5.1736 1.8664 28 1 5.0399 -6.7442 1.4265 29 1 6.0825 -5.4263 2.0131 30 1 5.6249 -8.9144 -0.3744 31 1 3.0676 -4.4724 -0.0038 32 1 1.1288 -2.9480 -0.0040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260407485.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:07 Heat of formation + Delta-G solvation = 75.683544 kcal Electronic energy + Delta-G solvation = -17176.540843 eV Core-core repulsion = 14332.883854 eV Total energy + Delta-G solvation = -2843.656989 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.52315 -38.85506 -35.71293 -34.58447 -32.81821 -31.80407 -29.67821 -28.72582 -27.80239 -25.45932 -23.38836 -22.86435 -20.72746 -20.09019 -17.76388 -17.47804 -16.92580 -16.02842 -15.90263 -15.08975 -14.28322 -13.78115 -13.67949 -13.47784 -13.20298 -12.96927 -12.90523 -12.73072 -12.41072 -11.98868 -11.27354 -11.17704 -11.12600 -10.90749 -10.86123 -10.49223 -10.36060 -9.66761 -9.29960 -9.11631 -9.00746 -8.65665 -7.22246 -6.32703 -4.41351 1.00647 1.61588 2.32864 2.39533 3.14817 3.23684 3.27267 3.75015 4.09410 4.18326 4.32933 4.41309 4.82614 5.01527 5.14717 5.26757 5.27632 5.31359 5.54199 5.80544 5.98431 6.13524 6.30412 6.49116 6.65066 6.71699 6.80118 7.10699 7.38556 7.50193 7.53626 7.66468 7.89013 8.29326 8.43150 8.70334 9.26858 10.73589 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.049201 B = 0.004768 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.958277 B = 5871.345009 C = 6176.800876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.152 3.848 3 N -0.312 5.312 4 O -0.097 6.097 5 C 0.345 3.655 6 N -0.567 5.567 7 C 0.476 3.524 8 N -0.673 5.673 9 C 0.264 3.736 10 H 0.049 0.951 11 C -0.155 4.155 12 C -0.535 4.535 13 H 0.066 0.934 14 C 0.069 3.931 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.252 4.252 21 C 0.035 3.965 22 C -0.331 4.331 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.401 0.599 27 H 0.016 0.984 28 H 0.096 0.904 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.151 0.849 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 7.135 1.146 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 N -0.062 5.062 4 O -0.098 6.098 5 C 0.158 3.842 6 N -0.301 5.301 7 C 0.230 3.770 8 N -0.297 5.297 9 C 0.163 3.837 10 H 0.067 0.933 11 C -0.214 4.214 12 C -0.573 4.573 13 H 0.084 0.916 14 C -0.135 4.135 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.277 4.277 21 C 0.008 3.992 22 C -0.341 4.341 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.107 0.893 26 H 0.236 0.764 27 H 0.035 0.965 28 H 0.114 0.886 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.169 0.831 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.522 8.361 1.159 11.995 hybrid contribution 0.383 -1.453 -0.351 1.543 sum -8.139 6.909 0.807 10.706 Atomic orbital electron populations 1.20405 0.85095 1.04481 1.04172 1.24242 0.97519 0.90176 0.90756 1.79937 0.84264 1.17515 1.24513 1.89124 1.23231 1.15862 1.81624 1.19852 0.89287 0.85533 0.89497 1.66026 1.33092 1.00975 1.29995 1.18374 0.88421 0.85341 0.84907 1.45808 1.05497 1.06932 1.71428 1.19058 0.98641 0.71828 0.94199 0.93330 1.22231 0.97748 1.04420 0.97015 1.21184 1.02936 0.91882 1.41310 0.91612 1.24853 0.96680 0.97012 0.94914 1.69862 1.30186 1.06524 1.45676 0.86319 0.82125 0.79433 0.78882 1.19589 1.20721 1.20733 1.21314 0.91123 1.02125 1.13108 1.20450 0.99320 0.89747 0.89651 1.20858 0.92548 0.95332 1.25383 0.89036 0.89824 0.89283 0.76351 0.96501 0.88553 0.94707 0.92378 0.83124 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.48 36.01 0.38 -0.31 16 2 C 0.15 2.11 7.46 -80.19 -0.60 1.51 16 3 N -0.31 -5.18 12.82 34.87 0.45 -4.73 16 4 O -0.10 -1.86 12.06 7.83 0.09 -1.77 16 5 C 0.35 6.62 8.64 -16.38 -0.14 6.47 16 6 N -0.57 -11.44 10.42 -12.20 -0.13 -11.57 16 7 C 0.48 9.25 7.61 -155.27 -1.18 8.07 16 8 N -0.67 -13.64 5.23 -55.04 -0.29 -13.93 16 9 C 0.26 5.90 2.24 -69.07 -0.15 5.75 16 10 H 0.05 1.15 6.40 -51.93 -0.33 0.81 16 11 C -0.16 -3.36 9.17 37.16 0.34 -3.02 16 12 C -0.53 -13.21 8.73 -34.44 -0.30 -13.51 16 13 H 0.07 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -22.67 11.32 55.43 0.63 -22.04 16 16 Si 0.91 19.66 29.54 -169.99 -5.02 14.64 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 C -0.25 -4.32 8.75 -39.59 -0.35 -4.66 16 21 C 0.03 0.51 10.17 -39.41 -0.40 0.10 16 22 C -0.33 -5.33 6.34 -105.11 -0.67 -6.00 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.40 7.93 8.66 -40.82 -0.35 7.58 16 27 H 0.02 0.32 7.64 -51.93 -0.40 -0.08 16 28 H 0.10 2.28 6.07 -51.93 -0.32 1.96 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.15 2.56 5.99 -52.49 -0.31 2.24 16 32 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 279.00 15.07 4.20 4.20 Total: -1.00 -27.75 279.00 -6.60 -34.34 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.37 Total: 4.83 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.17 Total: -3.97 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.66 Total: -52.27 kcal Atomic # 8 Polarization: -1.86 SS G_CDS: 0.09 Total: -1.77 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.75 -6.60 -34.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407485.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.028 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds