Wall clock time and date at job start Mon Mar 30 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29835 * 126.33010 * 2 1 4 4 O 1.41325 * 109.71741 * 180.02562 * 3 2 1 5 5 C 1.34772 * 109.41587 * 0.02562 * 4 3 2 6 6 N 1.32564 * 133.11402 * 180.02562 * 5 4 3 7 7 C 1.32264 * 121.46327 * 179.97438 * 6 5 4 8 8 N 1.38688 * 119.34002 * 179.72176 * 7 6 5 9 9 C 1.46508 * 119.99956 * 180.02562 * 8 7 6 10 10 H 1.08991 * 109.46905 * 34.99926 * 9 8 7 11 11 C 1.53004 * 109.46621 * 274.99926 * 9 8 7 12 12 C 1.50707 * 109.46882 * 155.00191 * 9 8 7 13 13 H 1.07997 * 120.00180 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99691 * 179.97438 * 12 9 8 15 15 N 1.31522 * 120.00174 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00064 * 180.02562 * 14 12 9 17 17 H 1.48491 * 109.46868 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47417 * 119.99989 * 16 14 12 19 19 H 1.48502 * 109.47012 * 240.00036 * 16 14 12 20 20 C 1.39599 * 121.32142 * 0.02562 * 7 6 5 21 21 C 1.36803 * 119.47932 * 0.03347 * 20 7 6 22 22 C 1.40072 * 118.28821 * 359.92981 * 21 20 7 23 23 H 1.08992 * 109.47328 * 269.99649 * 1 2 3 24 24 H 1.08999 * 109.47238 * 30.00062 * 1 2 3 25 25 H 1.09009 * 109.46961 * 149.99862 * 1 2 3 26 26 H 0.96998 * 120.00387 * 359.97438 * 8 7 6 27 27 H 1.08994 * 109.47241 * 60.00403 * 11 9 8 28 28 H 1.09006 * 109.46472 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.47046 * 299.99792 * 11 9 8 30 30 H 0.96998 * 120.00055 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.25471 * 179.97438 * 20 7 6 32 32 H 1.08007 * 120.85356 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0460 0.0000 4 8 3.6304 0.6419 -0.0006 5 6 3.6964 -0.7042 -0.0015 6 7 4.7072 -1.5618 -0.0019 7 6 4.5038 -2.8687 -0.0024 8 7 5.5938 -3.7261 -0.0087 9 6 5.3852 -5.1763 -0.0099 10 1 4.4976 -5.4151 -0.5955 11 6 5.1947 -5.6652 1.4274 12 6 6.5855 -5.8560 -0.6168 13 1 7.4201 -5.2667 -0.9671 14 6 6.6182 -7.2300 -0.7250 15 7 5.6021 -7.9477 -0.2980 16 14 8.1063 -8.0727 -1.4767 17 1 9.1059 -7.0493 -1.8748 18 1 8.7098 -8.9934 -0.4801 19 1 7.6858 -8.8451 -2.6733 20 6 3.2138 -3.4023 -0.0031 21 6 2.1365 -2.5592 -0.0039 22 6 2.3739 -1.1787 -0.0026 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 6.4944 -3.3658 -0.0130 27 1 4.3266 -5.1736 1.8664 28 1 5.0399 -6.7442 1.4265 29 1 6.0825 -5.4263 2.0131 30 1 5.6249 -8.9144 -0.3744 31 1 3.0676 -4.4724 -0.0038 32 1 1.1288 -2.9480 -0.0040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260407485.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:06 Heat of formation + Delta-G solvation = 57.088968 kcal Electronic energy + Delta-G solvation = -17177.347165 eV Core-core repulsion = 14332.883854 eV Total energy + Delta-G solvation = -2844.463311 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.83031 -40.26621 -37.33034 -35.77590 -34.56142 -33.13937 -31.27582 -29.68678 -29.18435 -27.32006 -24.73134 -24.34573 -22.30415 -21.29571 -19.36918 -18.82217 -18.26566 -17.58924 -17.34894 -16.84335 -15.78350 -15.18632 -14.91039 -14.77997 -14.29135 -14.23872 -14.11097 -13.91261 -13.69646 -13.48844 -13.01396 -12.91496 -12.67895 -12.32350 -12.22975 -12.12733 -11.97581 -11.19925 -10.99986 -10.59307 -10.53147 -10.33830 -8.71792 -8.21813 -6.35869 -0.25757 0.25755 1.03214 1.12890 1.42514 1.46560 1.56063 2.29768 2.49774 2.71306 3.05827 3.10129 3.23808 3.60490 3.91145 4.12159 4.27362 4.62688 4.67228 4.74914 4.81296 4.89785 4.95460 4.99498 5.06331 5.22611 5.34006 5.48383 5.61898 5.79650 5.93937 6.07267 6.20854 6.65132 6.72582 7.05615 7.35870 8.83643 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.049201 B = 0.004768 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.958277 B = 5871.345009 C = 6176.800876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.173 3.827 3 N -0.330 5.330 4 O -0.133 6.133 5 C 0.314 3.686 6 N -0.593 5.593 7 C 0.460 3.540 8 N -0.684 5.684 9 C 0.275 3.725 10 H 0.036 0.964 11 C -0.143 4.143 12 C -0.553 4.553 13 H 0.059 0.941 14 C 0.029 3.971 15 N -0.905 5.905 16 Si 0.962 3.038 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.279 1.279 20 C -0.266 4.266 21 C 0.060 3.940 22 C -0.327 4.327 23 H 0.116 0.884 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.399 0.601 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.268 0.732 31 H 0.153 0.847 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 7.143 1.074 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.006 4.006 3 N -0.085 5.085 4 O -0.131 6.131 5 C 0.129 3.871 6 N -0.328 5.328 7 C 0.216 3.784 8 N -0.309 5.309 9 C 0.172 3.828 10 H 0.054 0.946 11 C -0.202 4.202 12 C -0.591 4.591 13 H 0.077 0.923 14 C -0.172 4.172 15 N -0.543 5.543 16 Si 0.787 3.213 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.205 1.205 20 C -0.291 4.291 21 C 0.035 3.965 22 C -0.337 4.337 23 H 0.135 0.865 24 H 0.116 0.884 25 H 0.135 0.865 26 H 0.233 0.767 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.170 0.830 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.926 8.387 1.089 13.817 hybrid contribution 0.991 -1.325 -0.326 1.686 sum -9.935 7.063 0.762 12.213 Atomic orbital electron populations 1.20779 0.80413 1.06625 1.06307 1.25126 0.99766 0.88134 0.87569 1.79961 0.83187 1.18631 1.26707 1.89087 1.25530 1.16144 1.82336 1.20138 0.90626 0.85739 0.90640 1.65847 1.34687 1.01607 1.30665 1.18562 0.89036 0.85132 0.85648 1.45539 1.05787 1.06224 1.73310 1.18751 0.97139 0.72864 0.93997 0.94617 1.22052 0.98178 1.03139 0.96781 1.21471 1.03625 0.92395 1.41598 0.92293 1.25508 0.98867 0.97544 0.95315 1.69945 1.31372 1.06735 1.46276 0.85450 0.79366 0.78318 0.78141 1.19710 1.20387 1.20461 1.21418 0.90863 1.02607 1.14178 1.20949 1.00978 0.88427 0.86193 1.21210 0.91691 0.96700 1.24060 0.86550 0.88394 0.86461 0.76678 0.94737 0.90462 0.95333 0.92220 0.82978 0.79132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.48 71.24 0.75 -0.20 16 2 C 0.17 4.26 7.46 44.96 0.34 4.60 16 3 N -0.33 -10.54 12.82 -43.60 -0.56 -11.10 16 4 O -0.13 -5.20 12.06 30.43 0.37 -4.83 16 5 C 0.31 12.07 8.64 85.13 0.74 12.80 16 6 N -0.59 -24.50 10.42 -305.71 -3.18 -27.69 16 7 C 0.46 18.05 7.61 133.32 1.01 19.07 16 8 N -0.68 -28.42 5.23 -328.05 -1.71 -30.14 16 9 C 0.27 12.46 2.24 44.25 0.10 12.56 16 10 H 0.04 1.71 6.40 -2.39 -0.02 1.70 16 11 C -0.14 -6.21 9.17 71.98 0.66 -5.55 16 12 C -0.55 -27.71 8.73 25.60 0.22 -27.49 16 13 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 14 C 0.03 1.45 5.30 84.65 0.45 1.90 16 15 N -0.91 -46.47 11.32 21.45 0.24 -46.23 16 16 Si 0.96 40.35 29.54 68.60 2.03 42.38 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 20 C -0.27 -8.74 8.75 22.26 0.19 -8.55 16 21 C 0.06 1.55 10.17 22.38 0.23 1.77 16 22 C -0.33 -9.76 6.34 -20.18 -0.13 -9.89 16 23 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.40 16.46 8.66 -92.71 -0.80 15.65 16 27 H 0.03 1.33 7.64 -2.39 -0.02 1.31 16 28 H 0.08 3.68 6.07 -2.38 -0.01 3.66 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 31 H 0.15 4.97 5.99 -2.91 -0.02 4.95 16 32 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -61.96 279.00 2.09 -59.87 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.36 Total: 16.71 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 4.56 Total: 1.03 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -5.21 Total: -115.15 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.37 Total: -4.83 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -61.96 2.09 -59.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407485.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.954 kcal (2) G-P(sol) polarization free energy of solvation -61.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds