Wall clock time and date at job start Mon Mar 30 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29836 * 126.33110 * 2 1 4 4 O 1.41325 * 109.71365 * 179.97438 * 3 2 1 5 5 C 1.34773 * 109.41624 * 359.97438 * 4 3 2 6 6 N 1.32574 * 133.11166 * 179.97438 * 5 4 3 7 7 C 1.32265 * 121.45733 * 180.02562 * 6 5 4 8 8 N 1.38701 * 119.33489 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99733 * 180.27825 * 8 7 6 10 10 H 1.08995 * 109.47013 * 324.72202 * 9 8 7 11 11 C 1.52999 * 109.47257 * 84.72189 * 9 8 7 12 12 C 1.50696 * 109.47047 * 204.72182 * 9 8 7 13 13 H 1.08003 * 120.00092 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00258 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00015 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00053 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47344 * 60.00162 * 16 14 12 18 18 H 1.48499 * 109.47221 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47148 * 300.00373 * 16 14 12 20 20 C 1.39594 * 121.32540 * 0.26010 * 7 6 5 21 21 C 1.36805 * 119.48102 * 359.48132 * 20 7 6 22 22 C 1.40082 * 118.27909 * 0.50544 * 21 20 7 23 23 H 1.09001 * 109.46948 * 270.02348 * 1 2 3 24 24 H 1.08996 * 109.47576 * 30.01718 * 1 2 3 25 25 H 1.08996 * 109.47791 * 150.02084 * 1 2 3 26 26 H 0.97001 * 119.99822 * 359.97438 * 8 7 6 27 27 H 1.09003 * 109.47054 * 179.97438 * 11 9 8 28 28 H 1.08996 * 109.47245 * 299.99926 * 11 9 8 29 29 H 1.08995 * 109.47098 * 60.00065 * 11 9 8 30 30 H 0.96996 * 120.00441 * 179.97438 * 15 14 12 31 31 H 1.08008 * 120.25766 * 179.74578 * 20 7 6 32 32 H 1.08001 * 120.85742 * 180.22424 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0460 0.0000 4 8 3.6304 0.6418 0.0006 5 6 3.6962 -0.7043 0.0015 6 7 4.7071 -1.5620 0.0019 7 6 4.5035 -2.8689 0.0024 8 7 5.5937 -3.7265 0.0023 9 6 5.3849 -5.1765 -0.0034 10 1 4.5012 -5.4186 0.5870 11 6 5.1846 -5.6573 -1.4420 12 6 6.5891 -5.8597 0.5916 13 1 7.4261 -5.2724 0.9396 14 6 6.6220 -7.2343 0.6928 15 7 5.6027 -7.9494 0.2695 16 14 8.1151 -8.0812 1.4296 17 1 8.3105 -7.6140 2.8256 18 1 7.9035 -9.5510 1.4240 19 1 9.3186 -7.7517 0.6245 20 6 3.2136 -3.4024 -0.0029 21 6 2.1362 -2.5593 0.0021 22 6 2.3739 -1.1788 0.0015 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 6.4942 -3.3660 0.0015 27 1 5.0298 -6.7363 -1.4462 28 1 4.3136 -5.1632 -1.8723 29 1 6.0683 -5.4152 -2.0323 30 1 5.6259 -8.9165 0.3403 31 1 3.0672 -4.4725 -0.0066 32 1 1.1286 -2.9480 0.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260407496.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:09 Heat of formation + Delta-G solvation = 57.167989 kcal Electronic energy + Delta-G solvation = -17177.671059 eV Core-core repulsion = 14333.211175 eV Total energy + Delta-G solvation = -2844.459884 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.83063 -40.26597 -37.32940 -35.77556 -34.55968 -33.13919 -31.27354 -29.68708 -29.18620 -27.31483 -24.72932 -24.34492 -22.30315 -21.29579 -19.36698 -18.82261 -18.26387 -17.58088 -17.35013 -16.84167 -15.78562 -15.18531 -14.91169 -14.77928 -14.28988 -14.23272 -14.12006 -13.90874 -13.68329 -13.49153 -13.01807 -12.89487 -12.69594 -12.32249 -12.21903 -12.12888 -11.97736 -11.20871 -11.00721 -10.58946 -10.52895 -10.33719 -8.71785 -8.21244 -6.35501 -0.25770 0.25738 1.03241 1.12816 1.45425 1.46576 1.53611 2.29803 2.50036 2.71284 3.05885 3.10542 3.23797 3.60537 3.91170 4.12105 4.27391 4.62694 4.67313 4.74827 4.81329 4.89813 4.95473 4.99502 5.06360 5.22593 5.34047 5.48314 5.61764 5.79641 5.94251 6.07296 6.20866 6.64892 6.72692 7.05612 7.36053 8.83819 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.049371 B = 0.004766 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.003136 B = 5873.123692 C = 6181.226263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.173 3.827 3 N -0.330 5.330 4 O -0.133 6.133 5 C 0.314 3.686 6 N -0.593 5.593 7 C 0.460 3.540 8 N -0.684 5.684 9 C 0.276 3.724 10 H 0.036 0.964 11 C -0.143 4.143 12 C -0.555 4.555 13 H 0.059 0.941 14 C 0.030 3.970 15 N -0.905 5.905 16 Si 0.961 3.039 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.273 1.273 20 C -0.266 4.266 21 C 0.060 3.940 22 C -0.327 4.327 23 H 0.116 0.884 24 H 0.098 0.902 25 H 0.117 0.883 26 H 0.399 0.601 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.027 0.973 30 H 0.269 0.731 31 H 0.153 0.847 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.873 7.133 -0.952 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.006 4.006 3 N -0.085 5.085 4 O -0.131 6.131 5 C 0.129 3.871 6 N -0.328 5.328 7 C 0.216 3.784 8 N -0.309 5.309 9 C 0.173 3.827 10 H 0.053 0.947 11 C -0.202 4.202 12 C -0.593 4.593 13 H 0.077 0.923 14 C -0.172 4.172 15 N -0.543 5.543 16 Si 0.787 3.213 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.199 1.199 20 C -0.291 4.291 21 C 0.035 3.965 22 C -0.337 4.337 23 H 0.134 0.866 24 H 0.116 0.884 25 H 0.136 0.864 26 H 0.233 0.767 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.170 0.830 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.932 8.370 -0.970 13.802 hybrid contribution 1.005 -1.308 0.330 1.682 sum -9.927 7.062 -0.640 12.199 Atomic orbital electron populations 1.20778 0.80413 1.06649 1.06285 1.25126 0.99766 0.88134 0.87570 1.79961 0.83189 1.18629 1.26704 1.89087 1.25531 1.16143 1.82336 1.20137 0.90628 0.85739 0.90645 1.65854 1.34678 1.01601 1.30666 1.18566 0.89039 0.85134 0.85649 1.45540 1.05783 1.06220 1.73323 1.18732 0.97103 0.72862 0.93981 0.94657 1.22052 0.98158 1.03138 0.96808 1.21415 1.03360 0.92369 1.42160 0.92274 1.25504 0.98895 0.97547 0.95242 1.69926 1.31286 1.06836 1.46226 0.85561 0.79574 0.77347 0.78854 1.20036 1.20544 1.19863 1.21420 0.90863 1.02606 1.14166 1.20952 1.00979 0.88424 0.86193 1.21210 0.91692 0.96700 1.24054 0.86611 0.88370 0.86423 0.76673 0.90462 0.94723 0.95359 0.92201 0.82979 0.79128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.48 71.24 0.75 -0.20 16 2 C 0.17 4.26 7.46 44.96 0.34 4.60 16 3 N -0.33 -10.54 12.82 -43.60 -0.56 -11.10 16 4 O -0.13 -5.20 12.06 30.42 0.37 -4.83 16 5 C 0.31 12.06 8.64 85.13 0.74 12.80 16 6 N -0.59 -24.50 10.42 -305.70 -3.18 -27.68 16 7 C 0.46 18.05 7.61 133.32 1.01 19.07 16 8 N -0.68 -28.43 5.23 -328.09 -1.71 -30.14 16 9 C 0.28 12.50 2.24 44.24 0.10 12.60 16 10 H 0.04 1.70 6.43 -2.39 -0.02 1.68 16 11 C -0.14 -6.22 9.15 71.98 0.66 -5.56 16 12 C -0.55 -27.81 8.73 25.60 0.22 -27.59 16 13 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 14 C 0.03 1.48 5.30 84.66 0.45 1.93 16 15 N -0.91 -46.48 11.32 21.45 0.24 -46.23 16 16 Si 0.96 40.31 29.54 68.60 2.03 42.34 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 C -0.27 -8.74 8.71 22.26 0.19 -8.55 16 21 C 0.06 1.55 10.17 22.38 0.23 1.77 16 22 C -0.33 -9.76 6.34 -20.18 -0.13 -9.89 16 23 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.40 16.44 8.66 -92.71 -0.80 15.64 16 27 H 0.08 3.68 6.07 -2.39 -0.01 3.66 16 28 H 0.03 1.33 7.58 -2.39 -0.02 1.32 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 31 H 0.15 4.97 5.97 -2.91 -0.02 4.95 16 32 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -61.88 278.90 2.09 -59.79 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.36 Total: 16.87 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 4.56 Total: 0.99 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -5.22 Total: -115.16 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.37 Total: -4.83 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -61.88 2.09 -59.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407496.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.959 kcal (2) G-P(sol) polarization free energy of solvation -61.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds