Wall clock time and date at job start Mon Mar 30 2020 06:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48503 * 109.47290 * 269.99590 * 3 2 1 5 5 H 1.48498 * 109.47359 * 29.99764 * 3 2 1 6 6 H 1.48510 * 109.47236 * 149.99585 * 3 2 1 7 7 C 1.37875 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00020 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46501 * 299.98046 * 9 7 2 11 11 C 1.53033 * 109.46633 * 179.97438 * 9 7 2 12 12 C 1.53111 * 109.28170 * 299.17798 * 11 9 7 13 13 C 1.53119 * 109.15908 * 302.34373 * 12 11 9 14 14 C 1.53036 * 109.27980 * 57.65410 * 13 12 11 15 15 H 1.09002 * 109.46198 * 60.83588 * 14 13 12 16 16 C 1.50702 * 109.46493 * 180.81676 * 14 13 12 17 17 C 1.38263 * 119.94346 * 79.74613 * 16 14 13 18 18 C 1.38152 * 120.05140 * 179.72910 * 17 16 14 19 19 C 1.38724 * 119.94232 * 0.56852 * 18 17 16 20 20 O 1.35909 * 120.05280 * 179.68564 * 19 18 17 21 21 C 1.38727 * 119.89319 * 359.70178 * 19 18 17 22 22 C 1.38144 * 119.94338 * 0.02562 * 21 19 18 23 23 N 1.46848 * 109.52316 * 300.82150 * 14 13 12 24 24 H 0.97001 * 119.99834 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.50603 * 179.22990 * 11 9 7 26 26 H 1.09001 * 109.53049 * 59.13871 * 11 9 7 27 27 H 1.08999 * 109.52910 * 182.43879 * 12 11 9 28 28 H 1.08998 * 109.52382 * 62.24686 * 12 11 9 29 29 H 1.08997 * 109.50505 * 297.70825 * 13 12 11 30 30 H 1.08997 * 109.53809 * 177.61464 * 13 12 11 31 31 H 1.07999 * 119.97380 * 359.97438 * 17 16 14 32 32 H 1.08001 * 120.02187 * 180.25201 * 18 17 16 33 33 H 0.96703 * 113.99870 * 270.02289 * 20 19 18 34 34 H 1.08000 * 120.02985 * 180.02562 * 21 19 18 35 35 H 1.07998 * 119.97507 * 179.97438 * 22 21 19 36 36 H 1.00902 * 110.99851 * 185.84063 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6244 -2.5567 0.8905 11 6 2.2457 -3.6622 0.0005 12 6 3.1098 -3.5885 -1.2613 13 6 2.2025 -3.6217 -2.4943 14 6 1.2091 -2.4598 -2.4221 15 1 1.7543 -1.5160 -2.4105 16 6 0.3008 -2.5002 -3.6239 17 6 -0.7693 -3.3754 -3.6511 18 6 -1.6067 -3.4104 -4.7493 19 6 -1.3662 -2.5749 -5.8303 20 8 -2.1849 -2.6120 -6.9145 21 6 -0.2886 -1.7017 -5.8029 22 6 0.5425 -1.6665 -4.7001 23 7 0.4062 -2.5760 -1.1981 24 1 -0.4850 0.8401 -0.0004 25 1 1.7015 -4.6064 0.0143 26 1 2.8830 -3.5966 0.8824 27 1 3.7905 -4.4394 -1.2870 28 1 3.6837 -2.6618 -1.2562 29 1 1.6576 -4.5653 -2.5199 30 1 2.8084 -3.5269 -3.3954 31 1 -0.9530 -4.0293 -2.8114 32 1 -2.4448 -4.0913 -4.7683 33 1 -1.9099 -3.2432 -7.5936 34 1 -0.0996 -1.0499 -6.6431 35 1 1.3818 -0.9872 -4.6784 36 1 -0.3200 -1.8758 -1.1742 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260423818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:38 Heat of formation + Delta-G solvation = -32.570272 kcal Electronic energy + Delta-G solvation = -18229.499287 eV Core-core repulsion = 15484.688404 eV Total energy + Delta-G solvation = -2744.810884 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.52026 -37.87134 -36.13288 -32.71489 -31.42711 -30.61484 -30.05769 -27.74057 -25.15971 -23.01622 -22.33313 -21.82294 -20.36460 -18.55297 -18.13424 -16.05185 -15.96413 -15.29993 -15.08711 -14.61070 -14.25187 -13.57493 -13.19336 -12.93557 -12.89816 -12.60251 -12.44734 -11.90557 -11.69219 -11.43047 -11.36684 -10.98600 -10.87022 -10.58011 -10.28251 -10.13150 -10.00244 -9.48614 -9.32653 -9.10546 -8.58529 -8.48334 -8.00241 -7.00251 -6.02582 -4.17567 1.63039 1.76197 3.23032 3.31668 3.33977 4.02869 4.35652 4.46915 5.13015 5.26378 5.30453 5.41209 5.69132 5.81255 5.88665 5.94119 6.00273 6.18893 6.24620 6.36586 6.44326 6.53874 6.61616 6.69340 6.76745 6.84375 6.92548 7.01859 7.13523 7.15208 7.22589 7.34742 7.70278 7.79343 7.85220 8.21387 8.65931 8.91617 9.09447 9.52386 10.94638 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.007667 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.939597 B = 3651.180892 C = 4303.705021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.055 0.945 9 C 0.205 3.795 10 H 0.040 0.960 11 C -0.103 4.103 12 C -0.109 4.109 13 C -0.097 4.097 14 C 0.132 3.868 15 H 0.056 0.944 16 C -0.065 4.065 17 C -0.079 4.079 18 C -0.151 4.151 19 C 0.082 3.918 20 O -0.503 6.503 21 C -0.150 4.150 22 C -0.104 4.104 23 N -0.681 5.681 24 H 0.264 0.736 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.381 0.619 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 -6.372 -9.544 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.073 0.927 9 C 0.097 3.903 10 H 0.058 0.942 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.135 4.135 14 C 0.022 3.978 15 H 0.073 0.927 16 C -0.066 4.066 17 C -0.097 4.097 18 C -0.170 4.170 19 C 0.038 3.962 20 O -0.313 6.313 21 C -0.168 4.168 22 C -0.122 4.122 23 N -0.315 5.315 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.236 0.764 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.055 -6.502 -9.215 11.278 hybrid contribution 0.883 1.766 -0.306 1.998 sum 0.938 -4.736 -9.520 10.675 Atomic orbital electron populations 1.69710 1.05776 1.26982 1.50765 1.25000 0.94830 0.99068 0.94689 0.86675 0.80012 0.83735 0.78105 1.20758 1.21181 1.19933 1.21831 0.93530 0.91625 1.50824 0.92687 1.19057 0.90466 0.90981 0.89763 0.94237 1.21543 0.97727 0.98813 0.96047 1.21451 0.97343 1.00354 0.95484 1.21486 0.96725 0.98290 0.96956 1.20126 0.92026 0.97674 0.88008 0.92654 1.20321 0.96214 0.94456 0.95570 1.21038 0.93416 0.98245 0.97006 1.21399 1.00612 1.00123 0.94817 1.18423 0.91470 0.97720 0.88543 1.84835 1.51585 1.64902 1.29930 1.21261 0.95199 1.00702 0.99659 1.20988 0.99309 0.98863 0.93076 1.60982 1.14885 1.54932 1.00715 0.92609 0.94022 0.93461 0.94322 0.91736 0.92610 0.93576 0.84672 0.86116 0.76418 0.86228 0.86079 0.82025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.51 11.56 55.43 0.64 -23.87 16 2 C 0.07 1.76 5.38 -17.82 -0.10 1.67 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.54 -13.98 6.47 -34.44 -0.22 -14.21 16 8 H 0.05 1.44 6.76 -52.49 -0.35 1.08 16 9 C 0.21 4.94 3.04 -68.88 -0.21 4.73 16 10 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 11 C -0.10 -2.12 5.57 -26.66 -0.15 -2.27 16 12 C -0.11 -2.04 5.75 -26.61 -0.15 -2.20 16 13 C -0.10 -1.76 5.35 -26.65 -0.14 -1.91 16 14 C 0.13 2.72 2.38 -68.87 -0.16 2.56 16 15 H 0.06 1.30 6.84 -51.93 -0.36 0.95 16 16 C -0.07 -1.21 4.86 -104.60 -0.51 -1.72 16 17 C -0.08 -1.36 9.32 -39.60 -0.37 -1.73 16 18 C -0.15 -2.35 9.99 -39.43 -0.39 -2.74 16 19 C 0.08 1.26 6.70 -39.22 -0.26 1.00 16 20 O -0.50 -6.67 13.50 -19.45 -0.26 -6.93 16 21 C -0.15 -2.33 9.99 -39.44 -0.39 -2.72 16 22 C -0.10 -1.78 9.66 -39.61 -0.38 -2.16 16 23 N -0.68 -15.48 5.51 -102.20 -0.56 -16.05 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.30 6.73 -51.93 -0.35 0.95 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.14 2.34 7.72 -52.49 -0.41 1.93 16 32 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.38 3.03 9.06 45.56 0.41 3.44 16 34 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.12 1.97 8.03 -52.49 -0.42 1.55 16 36 H 0.36 9.04 6.83 -39.29 -0.27 8.77 16 LS Contribution 291.16 15.07 4.39 4.39 Total: -1.00 -27.96 291.16 -8.53 -36.48 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.26 Total: 11.80 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -3.45 Total: -21.70 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.08 Total: -39.92 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.26 Total: -6.93 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.96 -8.53 -36.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.911 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds