Wall clock time and date at job start Mon Mar 30 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48503 * 109.47290 * 269.99590 * 3 2 1 5 5 H 1.48498 * 109.47359 * 29.99764 * 3 2 1 6 6 H 1.48510 * 109.47236 * 149.99585 * 3 2 1 7 7 C 1.37875 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00020 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46501 * 299.98046 * 9 7 2 11 11 C 1.53033 * 109.46633 * 179.97438 * 9 7 2 12 12 C 1.53111 * 109.28170 * 299.17798 * 11 9 7 13 13 C 1.53119 * 109.15908 * 302.34373 * 12 11 9 14 14 C 1.53036 * 109.27980 * 57.65410 * 13 12 11 15 15 H 1.09002 * 109.46198 * 60.83588 * 14 13 12 16 16 C 1.50702 * 109.46493 * 180.81676 * 14 13 12 17 17 C 1.38263 * 119.94346 * 79.74613 * 16 14 13 18 18 C 1.38152 * 120.05140 * 179.72910 * 17 16 14 19 19 C 1.38724 * 119.94232 * 0.56852 * 18 17 16 20 20 O 1.35909 * 120.05280 * 179.68564 * 19 18 17 21 21 C 1.38727 * 119.89319 * 359.70178 * 19 18 17 22 22 C 1.38144 * 119.94338 * 0.02562 * 21 19 18 23 23 N 1.46848 * 109.52316 * 300.82150 * 14 13 12 24 24 H 0.97001 * 119.99834 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.50603 * 179.22990 * 11 9 7 26 26 H 1.09001 * 109.53049 * 59.13871 * 11 9 7 27 27 H 1.08999 * 109.52910 * 182.43879 * 12 11 9 28 28 H 1.08998 * 109.52382 * 62.24686 * 12 11 9 29 29 H 1.08997 * 109.50505 * 297.70825 * 13 12 11 30 30 H 1.08997 * 109.53809 * 177.61464 * 13 12 11 31 31 H 1.07999 * 119.97380 * 359.97438 * 17 16 14 32 32 H 1.08001 * 120.02187 * 180.25201 * 18 17 16 33 33 H 0.96703 * 113.99870 * 270.02289 * 20 19 18 34 34 H 1.08000 * 120.02985 * 180.02562 * 21 19 18 35 35 H 1.07998 * 119.97507 * 179.97438 * 22 21 19 36 36 H 1.00902 * 110.99851 * 185.84063 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6244 -2.5567 0.8905 11 6 2.2457 -3.6622 0.0005 12 6 3.1098 -3.5885 -1.2613 13 6 2.2025 -3.6217 -2.4943 14 6 1.2091 -2.4598 -2.4221 15 1 1.7543 -1.5160 -2.4105 16 6 0.3008 -2.5002 -3.6239 17 6 -0.7693 -3.3754 -3.6511 18 6 -1.6067 -3.4104 -4.7493 19 6 -1.3662 -2.5749 -5.8303 20 8 -2.1849 -2.6120 -6.9145 21 6 -0.2886 -1.7017 -5.8029 22 6 0.5425 -1.6665 -4.7001 23 7 0.4062 -2.5760 -1.1981 24 1 -0.4850 0.8401 -0.0004 25 1 1.7015 -4.6064 0.0143 26 1 2.8830 -3.5966 0.8824 27 1 3.7905 -4.4394 -1.2870 28 1 3.6837 -2.6618 -1.2562 29 1 1.6576 -4.5653 -2.5199 30 1 2.8084 -3.5269 -3.3954 31 1 -0.9530 -4.0293 -2.8114 32 1 -2.4448 -4.0913 -4.7683 33 1 -1.9099 -3.2432 -7.5936 34 1 -0.0996 -1.0499 -6.6431 35 1 1.3818 -0.9872 -4.6784 36 1 -0.3200 -1.8758 -1.1742 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260423818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:37 Heat of formation + Delta-G solvation = -50.615597 kcal Electronic energy + Delta-G solvation = -18230.281791 eV Core-core repulsion = 15484.688404 eV Total energy + Delta-G solvation = -2745.593388 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82558 -39.37388 -37.41410 -34.62700 -32.94440 -31.95962 -31.73828 -29.18703 -27.12113 -24.48177 -23.62545 -23.45405 -21.82350 -20.31457 -19.26269 -17.95066 -17.48834 -16.64890 -16.57494 -16.23847 -15.67802 -14.99467 -14.83186 -14.63264 -14.24943 -14.14603 -13.99712 -13.54598 -13.23141 -12.91169 -12.85460 -12.76645 -12.50123 -12.37877 -12.05877 -11.62783 -11.31277 -11.16351 -11.06939 -10.88320 -10.46102 -9.84499 -9.30555 -8.89598 -8.03109 -6.26702 0.37365 0.49686 1.33846 1.37250 1.45237 2.38120 2.78841 3.11826 3.36623 3.79644 4.06274 4.12490 4.17556 4.29653 4.47561 4.52267 4.59489 4.71948 4.80051 4.94552 5.02373 5.07838 5.13442 5.21509 5.34681 5.36426 5.41879 5.49910 5.53153 5.58782 5.71837 5.79221 5.90504 6.00587 6.23480 6.74348 6.92553 6.96837 7.11963 7.46185 8.89003 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.007667 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.939597 B = 3651.180892 C = 4303.705021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.941 3.059 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.542 4.542 8 H 0.050 0.950 9 C 0.200 3.800 10 H 0.004 0.996 11 C -0.099 4.099 12 C -0.105 4.105 13 C -0.091 4.091 14 C 0.137 3.863 15 H 0.020 0.980 16 C -0.089 4.089 17 C -0.085 4.085 18 C -0.151 4.151 19 C 0.092 3.908 20 O -0.507 6.507 21 C -0.150 4.150 22 C -0.114 4.114 23 N -0.674 5.674 24 H 0.262 0.738 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.143 0.857 33 H 0.408 0.592 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 -7.028 -11.361 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.177 4.177 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.068 0.932 9 C 0.092 3.908 10 H 0.022 0.978 11 C -0.137 4.137 12 C -0.142 4.142 13 C -0.129 4.129 14 C 0.027 3.973 15 H 0.038 0.962 16 C -0.089 4.089 17 C -0.104 4.104 18 C -0.170 4.170 19 C 0.048 3.952 20 O -0.320 6.320 21 C -0.168 4.168 22 C -0.133 4.133 23 N -0.306 5.306 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.267 0.733 34 H 0.160 0.840 35 H 0.140 0.860 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.371 -7.188 -11.051 13.188 hybrid contribution 0.730 1.941 0.188 2.082 sum 1.101 -5.247 -10.863 12.114 Atomic orbital electron populations 1.69830 1.06821 1.27309 1.51734 1.25632 0.95516 1.01848 0.94739 0.85809 0.78981 0.80405 0.77996 1.20538 1.21189 1.19462 1.22046 0.93339 0.92698 1.50110 0.93176 1.19037 0.90652 0.91966 0.89159 0.97814 1.21467 0.97240 0.97640 0.97311 1.21422 0.97381 1.00832 0.94611 1.21465 0.96323 0.97569 0.97559 1.20071 0.92391 0.96974 0.87909 0.96247 1.20193 0.97020 0.96290 0.95399 1.20997 0.93584 0.98201 0.97604 1.21597 1.00732 1.00458 0.94182 1.18474 0.90911 0.96767 0.89053 1.84771 1.51221 1.66030 1.30007 1.21477 0.94818 1.00897 0.99635 1.21064 0.99988 0.98775 0.93425 1.60989 1.14518 1.53784 1.01290 0.92895 0.92853 0.93296 0.91088 0.93493 0.91705 0.91634 0.85297 0.83953 0.73324 0.84007 0.86042 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.69 11.56 21.45 0.25 -51.44 16 2 C 0.02 1.20 5.38 84.65 0.46 1.66 16 3 Si 0.94 43.45 29.54 68.60 2.03 45.48 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.54 -28.78 6.47 25.60 0.17 -28.61 16 8 H 0.05 2.66 6.76 -2.91 -0.02 2.64 16 9 C 0.20 9.89 3.04 44.19 0.13 10.03 16 10 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 11 C -0.10 -4.01 5.57 30.64 0.17 -3.84 16 12 C -0.10 -3.80 5.75 30.67 0.18 -3.62 16 13 C -0.09 -3.22 5.35 30.65 0.16 -3.06 16 14 C 0.14 5.69 2.38 44.19 0.11 5.79 16 15 H 0.02 0.95 6.84 -2.39 -0.02 0.93 16 16 C -0.09 -3.26 4.86 -19.85 -0.10 -3.36 16 17 C -0.09 -2.89 9.32 22.26 0.21 -2.68 16 18 C -0.15 -4.39 9.99 22.37 0.22 -4.16 16 19 C 0.09 2.57 6.70 22.50 0.15 2.72 16 20 O -0.51 -11.62 13.50 -92.53 -1.25 -12.87 16 21 C -0.15 -4.33 9.99 22.36 0.22 -4.10 16 22 C -0.11 -3.82 9.66 22.25 0.22 -3.60 16 23 N -0.67 -31.41 5.51 -477.26 -2.63 -34.04 16 24 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.86 6.73 -2.39 -0.02 1.84 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.13 4.43 7.72 -2.91 -0.02 4.41 16 32 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.41 4.82 9.06 -74.05 -0.67 4.15 16 34 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 35 H 0.12 3.94 8.03 -2.91 -0.02 3.92 16 36 H 0.34 17.83 6.83 -89.69 -0.61 17.22 16 Total: -1.00 -60.27 291.16 0.50 -59.77 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.20 Total: 29.94 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 2.30 Total: -36.84 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.38 Total: -85.49 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -1.25 Total: -12.87 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -60.27 0.50 -59.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.154 kcal (2) G-P(sol) polarization free energy of solvation -60.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds