Wall clock time and date at job start Mon Mar 30 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00426 * 2 1 4 4 H 1.48492 * 109.47446 * 270.00459 * 3 2 1 5 5 H 1.48506 * 109.47107 * 30.00388 * 3 2 1 6 6 H 1.48501 * 109.47015 * 149.99740 * 3 2 1 7 7 C 1.37878 * 119.99212 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00496 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99676 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.45793 * 60.02084 * 9 7 2 11 11 C 1.53037 * 109.46365 * 179.97438 * 9 7 2 12 12 C 1.53114 * 109.31211 * 60.85398 * 11 9 7 13 13 C 1.53125 * 109.16368 * 57.63311 * 12 11 9 14 14 C 1.53035 * 109.27580 * 302.35133 * 13 12 11 15 15 H 1.09005 * 109.46120 * 299.15195 * 14 13 12 16 16 C 1.50708 * 109.45911 * 179.19355 * 14 13 12 17 17 C 1.38268 * 119.93961 * 279.72098 * 16 14 13 18 18 C 1.38149 * 120.05065 * 179.72359 * 17 16 14 19 19 C 1.38735 * 119.94446 * 0.55581 * 18 17 16 20 20 O 1.35896 * 120.05570 * 179.74726 * 19 18 17 21 21 C 1.38733 * 119.88621 * 359.71693 * 19 18 17 22 22 C 1.38147 * 119.94567 * 0.02562 * 21 19 18 23 23 N 1.46840 * 109.52994 * 59.17458 * 14 13 12 24 24 H 0.97005 * 120.00146 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50283 * 300.89215 * 11 9 7 26 26 H 1.09003 * 109.50113 * 180.81402 * 11 9 7 27 27 H 1.08998 * 109.52405 * 177.54026 * 12 11 9 28 28 H 1.09007 * 109.52681 * 297.73305 * 12 11 9 29 29 H 1.09005 * 109.49488 * 62.28510 * 13 12 11 30 30 H 1.08998 * 109.50470 * 182.40590 * 13 12 11 31 31 H 1.07997 * 119.97601 * 0.02562 * 17 16 14 32 32 H 1.08000 * 120.02525 * 180.27310 * 18 17 16 33 33 H 0.96700 * 113.99784 * 269.97077 * 20 19 18 34 34 H 1.08001 * 120.02402 * 180.02562 * 21 19 18 35 35 H 1.08000 * 119.97079 * 180.02562 * 22 21 19 36 36 H 1.00905 * 110.99633 * 62.35061 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5114 -1.1943 0.0000 10 1 3.8742 -0.6813 0.8908 11 6 4.0212 -2.6372 -0.0001 12 6 3.5268 -3.3488 -1.2624 13 6 4.0099 -2.5794 -2.4951 14 6 3.4996 -1.1384 -2.4231 15 1 2.4096 -1.1392 -2.4125 16 6 3.9893 -0.3718 -3.6246 17 6 5.2785 0.1274 -3.6463 18 6 5.7316 0.8256 -4.7489 19 6 4.8882 1.0356 -5.8302 20 8 5.3299 1.7265 -6.9139 21 6 3.5932 0.5385 -5.8035 22 6 3.1466 -0.1636 -4.7008 23 7 4.0003 -0.5009 -1.1986 24 1 -0.4850 0.8401 0.0004 25 1 3.6447 -3.1563 0.8814 26 1 5.1111 -2.6381 0.0149 27 1 3.9240 -4.3636 -1.2878 28 1 2.4373 -3.3831 -1.2584 29 1 5.0996 -2.5787 -2.5195 30 1 3.6252 -3.0571 -3.3961 31 1 5.9334 -0.0328 -2.8026 32 1 6.7402 1.2115 -4.7672 33 1 5.1761 2.6797 -6.8620 34 1 2.9348 0.7004 -6.6442 35 1 2.1387 -0.5510 -4.6798 36 1 5.0082 -0.4531 -1.2021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260423822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:40 Heat of formation + Delta-G solvation = -25.382277 kcal Electronic energy + Delta-G solvation = -18316.545558 eV Core-core repulsion = 15572.046370 eV Total energy + Delta-G solvation = -2744.499189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76364 -38.26751 -36.31473 -32.53461 -31.55963 -30.91228 -30.56103 -27.98450 -25.40974 -23.29389 -22.49768 -21.71656 -20.55233 -18.92101 -18.26939 -16.54095 -16.13922 -15.34677 -15.14098 -14.47108 -14.35393 -13.80595 -13.64127 -13.20097 -13.04050 -12.77446 -12.63544 -12.18218 -11.94459 -11.72602 -11.29839 -11.02386 -10.70410 -10.61318 -10.32896 -10.19826 -9.91709 -9.75628 -9.54588 -8.97729 -8.74964 -8.48242 -8.23309 -7.28493 -5.99326 -4.06399 1.48017 1.59592 3.57535 3.62590 3.74929 3.84873 4.37346 4.66644 4.98463 5.11236 5.15389 5.25037 5.49090 5.58487 5.66926 5.68631 5.78713 5.94240 6.04696 6.06533 6.19320 6.21102 6.36114 6.44091 6.56157 6.61283 6.63470 6.76598 6.83781 6.93965 7.02310 7.10567 7.27798 7.66230 7.73436 7.99542 8.36793 8.65237 9.00630 9.65676 11.09915 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.008429 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.808991 B = 3321.058526 C = 3918.702055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.080 3.920 3 Si 0.928 3.072 4 H -0.279 1.279 5 H -0.320 1.320 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.175 3.825 10 H 0.045 0.955 11 C -0.134 4.134 12 C -0.109 4.109 13 C -0.134 4.134 14 C 0.132 3.868 15 H 0.110 0.890 16 C -0.061 4.061 17 C -0.096 4.096 18 C -0.146 4.146 19 C 0.084 3.916 20 O -0.504 6.504 21 C -0.144 4.144 22 C -0.098 4.098 23 N -0.675 5.675 24 H 0.262 0.738 25 H 0.058 0.942 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.384 0.616 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 0.359 -8.804 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.123 4.123 3 Si 0.760 3.240 4 H -0.205 1.205 5 H -0.250 1.250 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.068 3.932 10 H 0.062 0.938 11 C -0.173 4.173 12 C -0.146 4.146 13 C -0.174 4.174 14 C 0.022 3.978 15 H 0.128 0.872 16 C -0.061 4.061 17 C -0.114 4.114 18 C -0.165 4.165 19 C 0.040 3.960 20 O -0.313 6.313 21 C -0.163 4.163 22 C -0.116 4.116 23 N -0.305 5.305 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.239 0.761 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.288 0.375 -8.970 12.918 hybrid contribution 0.797 0.614 0.047 1.007 sum 10.085 0.988 -8.924 13.502 Atomic orbital electron populations 1.69967 1.06760 1.27178 1.50087 1.25015 0.94515 0.99947 0.92836 0.85985 0.78626 0.81223 0.78195 1.20481 1.25020 1.19843 1.20849 0.87989 0.94267 1.52080 0.90955 1.19732 0.96848 0.88072 0.88517 0.93760 1.22062 0.97562 1.00071 0.97600 1.21451 1.02290 0.96538 0.94362 1.22129 0.99492 0.97381 0.98350 1.20380 1.02114 0.88983 0.86307 0.87180 1.20211 0.93395 0.96919 0.95610 1.20852 0.95850 0.97566 0.97155 1.21317 1.00011 1.01924 0.93202 1.18405 0.92242 0.98250 0.87131 1.84805 1.83266 1.23396 1.39853 1.21337 0.95035 1.00959 0.98931 1.20997 0.99848 0.98155 0.92643 1.61054 1.11958 1.54900 1.02622 0.92899 0.92356 0.94722 0.94066 0.90574 0.93309 0.92619 0.85899 0.86018 0.76071 0.85863 0.85437 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.93 23.54 26.03 -169.99 -4.42 19.12 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.32 -8.33 7.11 56.52 0.40 -7.93 16 6 H -0.27 -6.71 6.54 56.52 0.37 -6.34 16 7 C -0.51 -13.63 7.05 -34.44 -0.24 -13.87 16 8 H 0.07 2.08 7.01 -52.49 -0.37 1.72 16 9 C 0.18 3.89 2.45 -68.87 -0.17 3.72 16 10 H 0.04 1.03 7.20 -51.93 -0.37 0.66 16 11 C -0.13 -2.53 5.55 -26.65 -0.15 -2.68 16 12 C -0.11 -1.95 5.75 -26.61 -0.15 -2.10 16 13 C -0.13 -2.27 5.34 -26.65 -0.14 -2.41 16 14 C 0.13 2.52 2.41 -68.88 -0.17 2.35 16 15 H 0.11 2.49 6.85 -51.93 -0.36 2.14 16 16 C -0.06 -1.05 4.96 -104.60 -0.52 -1.57 16 17 C -0.10 -1.50 9.28 -39.60 -0.37 -1.86 16 18 C -0.15 -2.10 9.99 -39.43 -0.39 -2.50 16 19 C 0.08 1.21 6.70 -39.21 -0.26 0.95 16 20 O -0.50 -6.29 13.50 -19.41 -0.26 -6.55 16 21 C -0.14 -2.13 9.99 -39.43 -0.39 -2.52 16 22 C -0.10 -1.60 9.66 -39.61 -0.38 -1.98 16 23 N -0.68 -13.77 3.68 -102.20 -0.38 -14.15 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.54 6.74 -51.93 -0.35 1.19 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.12 1.75 6.61 -52.49 -0.35 1.41 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.38 2.99 9.06 45.56 0.41 3.40 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.13 1.99 8.03 -52.49 -0.42 1.57 16 36 H 0.31 5.55 7.05 -39.29 -0.28 5.27 16 LS Contribution 286.21 15.07 4.31 4.31 Total: -1.00 -30.74 286.21 -7.62 -38.36 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.21 Total: 7.59 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -3.44 Total: -22.31 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.40 Total: -40.51 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.26 Total: -6.55 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -4.42 Total: 19.12 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.74 -7.62 -38.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.974 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds