Wall clock time and date at job start Mon Mar 30 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00426 * 2 1 4 4 H 1.48492 * 109.47446 * 270.00459 * 3 2 1 5 5 H 1.48506 * 109.47107 * 30.00388 * 3 2 1 6 6 H 1.48501 * 109.47015 * 149.99740 * 3 2 1 7 7 C 1.37878 * 119.99212 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00496 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99676 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.45793 * 60.02084 * 9 7 2 11 11 C 1.53037 * 109.46365 * 179.97438 * 9 7 2 12 12 C 1.53114 * 109.31211 * 60.85398 * 11 9 7 13 13 C 1.53125 * 109.16368 * 57.63311 * 12 11 9 14 14 C 1.53035 * 109.27580 * 302.35133 * 13 12 11 15 15 H 1.09005 * 109.46120 * 299.15195 * 14 13 12 16 16 C 1.50708 * 109.45911 * 179.19355 * 14 13 12 17 17 C 1.38268 * 119.93961 * 279.72098 * 16 14 13 18 18 C 1.38149 * 120.05065 * 179.72359 * 17 16 14 19 19 C 1.38735 * 119.94446 * 0.55581 * 18 17 16 20 20 O 1.35896 * 120.05570 * 179.74726 * 19 18 17 21 21 C 1.38733 * 119.88621 * 359.71693 * 19 18 17 22 22 C 1.38147 * 119.94567 * 0.02562 * 21 19 18 23 23 N 1.46840 * 109.52994 * 59.17458 * 14 13 12 24 24 H 0.97005 * 120.00146 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50283 * 300.89215 * 11 9 7 26 26 H 1.09003 * 109.50113 * 180.81402 * 11 9 7 27 27 H 1.08998 * 109.52405 * 177.54026 * 12 11 9 28 28 H 1.09007 * 109.52681 * 297.73305 * 12 11 9 29 29 H 1.09005 * 109.49488 * 62.28510 * 13 12 11 30 30 H 1.08998 * 109.50470 * 182.40590 * 13 12 11 31 31 H 1.07997 * 119.97601 * 0.02562 * 17 16 14 32 32 H 1.08000 * 120.02525 * 180.27310 * 18 17 16 33 33 H 0.96700 * 113.99784 * 269.97077 * 20 19 18 34 34 H 1.08001 * 120.02402 * 180.02562 * 21 19 18 35 35 H 1.08000 * 119.97079 * 180.02562 * 22 21 19 36 36 H 1.00905 * 110.99633 * 62.35061 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5114 -1.1943 0.0000 10 1 3.8742 -0.6813 0.8908 11 6 4.0212 -2.6372 -0.0001 12 6 3.5268 -3.3488 -1.2624 13 6 4.0099 -2.5794 -2.4951 14 6 3.4996 -1.1384 -2.4231 15 1 2.4096 -1.1392 -2.4125 16 6 3.9893 -0.3718 -3.6246 17 6 5.2785 0.1274 -3.6463 18 6 5.7316 0.8256 -4.7489 19 6 4.8882 1.0356 -5.8302 20 8 5.3299 1.7265 -6.9139 21 6 3.5932 0.5385 -5.8035 22 6 3.1466 -0.1636 -4.7008 23 7 4.0003 -0.5009 -1.1986 24 1 -0.4850 0.8401 0.0004 25 1 3.6447 -3.1563 0.8814 26 1 5.1111 -2.6381 0.0149 27 1 3.9240 -4.3636 -1.2878 28 1 2.4373 -3.3831 -1.2584 29 1 5.0996 -2.5787 -2.5195 30 1 3.6252 -3.0571 -3.3961 31 1 5.9334 -0.0328 -2.8026 32 1 6.7402 1.2115 -4.7672 33 1 5.1761 2.6797 -6.8620 34 1 2.9348 0.7004 -6.6442 35 1 2.1387 -0.5510 -4.6798 36 1 5.0082 -0.4531 -1.2021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260423822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:40 Heat of formation + Delta-G solvation = -46.693619 kcal Electronic energy + Delta-G solvation = -18317.469688 eV Core-core repulsion = 15572.046370 eV Total energy + Delta-G solvation = -2745.423318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01130 -39.64364 -37.48001 -34.53556 -33.00773 -32.43583 -31.86377 -29.33584 -27.34892 -24.65434 -23.69246 -23.28403 -21.88372 -20.66476 -19.31905 -18.50556 -17.48051 -16.64402 -16.26411 -16.24531 -15.83281 -15.39975 -14.98133 -14.71315 -14.41102 -14.32662 -14.16573 -13.86148 -13.20305 -12.99747 -12.87097 -12.68748 -12.40024 -12.23697 -11.86549 -11.70824 -11.55457 -11.33537 -11.18617 -10.90469 -10.63169 -9.90068 -9.44730 -8.86574 -8.18638 -6.26476 0.32114 0.44078 1.50350 1.58162 1.69845 2.55381 2.70437 3.14560 3.35505 3.63675 3.94745 3.97391 4.08547 4.17453 4.23839 4.43798 4.50485 4.55414 4.66626 4.73252 4.89834 4.91497 5.02593 5.03105 5.14542 5.27268 5.30239 5.41170 5.45529 5.47740 5.52954 5.71650 5.81691 5.94070 6.13344 6.53814 6.74956 6.87387 7.04497 7.47866 8.94070 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.008429 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.808991 B = 3321.058526 C = 3918.702055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.027 3.973 3 Si 0.986 3.014 4 H -0.283 1.283 5 H -0.331 1.331 6 H -0.254 1.254 7 C -0.499 4.499 8 H 0.035 0.965 9 C 0.176 3.824 10 H 0.041 0.959 11 C -0.129 4.129 12 C -0.107 4.107 13 C -0.126 4.126 14 C 0.139 3.861 15 H 0.062 0.938 16 C -0.083 4.083 17 C -0.098 4.098 18 C -0.145 4.145 19 C 0.090 3.910 20 O -0.507 6.507 21 C -0.149 4.149 22 C -0.115 4.115 23 N -0.683 5.683 24 H 0.260 0.740 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.408 0.592 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.114 0.916 -9.913 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.171 4.171 3 Si 0.817 3.183 4 H -0.209 1.209 5 H -0.262 1.262 6 H -0.178 1.178 7 C -0.538 4.538 8 H 0.053 0.947 9 C 0.068 3.932 10 H 0.059 0.941 11 C -0.168 4.168 12 C -0.145 4.145 13 C -0.165 4.165 14 C 0.030 3.970 15 H 0.080 0.920 16 C -0.083 4.083 17 C -0.116 4.116 18 C -0.164 4.164 19 C 0.046 3.954 20 O -0.320 6.320 21 C -0.167 4.167 22 C -0.134 4.134 23 N -0.314 5.314 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.166 0.834 33 H 0.266 0.734 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.669 0.933 -10.085 16.220 hybrid contribution -0.242 0.402 0.300 0.557 sum 12.427 1.335 -9.785 15.873 Atomic orbital electron populations 1.70098 1.08446 1.27623 1.53120 1.25743 0.94963 1.03129 0.93274 0.85034 0.78013 0.77449 0.77767 1.20914 1.26190 1.17787 1.21092 0.90687 0.92409 1.49586 0.94653 1.19572 0.93749 0.90628 0.89242 0.94148 1.21987 0.99437 0.97640 0.97772 1.21415 1.00130 0.98308 0.94631 1.22048 1.00793 0.95632 0.98018 1.20136 0.99342 0.90869 0.86702 0.92008 1.20087 0.94687 0.98463 0.95111 1.20998 0.95115 0.97289 0.98181 1.21585 1.01117 1.01137 0.92514 1.18503 0.91846 0.97710 0.87383 1.84749 1.83009 1.25247 1.38993 1.21514 0.95862 1.00508 0.98859 1.21059 0.99722 0.99087 0.93489 1.60719 1.13479 1.54980 1.02270 0.93193 0.93055 0.91384 0.91274 0.94208 0.90820 0.91876 0.84374 0.83443 0.73393 0.84248 0.86277 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.84 13.96 21.45 0.30 -59.55 16 2 C 0.03 1.56 5.47 84.65 0.46 2.03 16 3 Si 0.99 49.18 26.03 68.60 1.79 50.96 16 4 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.33 -16.95 7.11 99.48 0.71 -16.25 16 6 H -0.25 -11.70 6.54 99.48 0.65 -11.05 16 7 C -0.50 -27.31 7.05 25.60 0.18 -27.13 16 8 H 0.04 2.15 7.01 -2.91 -0.02 2.13 16 9 C 0.18 7.64 2.45 44.19 0.11 7.75 16 10 H 0.04 1.81 7.20 -2.39 -0.02 1.79 16 11 C -0.13 -4.65 5.55 30.64 0.17 -4.48 16 12 C -0.11 -3.72 5.75 30.67 0.18 -3.54 16 13 C -0.13 -4.02 5.34 30.65 0.16 -3.85 16 14 C 0.14 5.24 2.41 44.19 0.11 5.35 16 15 H 0.06 2.92 6.85 -2.38 -0.02 2.90 16 16 C -0.08 -2.76 4.96 -19.85 -0.10 -2.85 16 17 C -0.10 -2.74 9.28 22.26 0.21 -2.53 16 18 C -0.15 -3.63 9.99 22.37 0.22 -3.41 16 19 C 0.09 2.31 6.70 22.51 0.15 2.46 16 20 O -0.51 -10.77 13.50 -92.38 -1.25 -12.02 16 21 C -0.15 -4.13 9.99 22.37 0.22 -3.90 16 22 C -0.11 -3.71 9.66 22.25 0.21 -3.49 16 23 N -0.68 -26.65 3.68 -477.24 -1.76 -28.41 16 24 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.65 6.74 -2.38 -0.02 1.64 16 29 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.14 3.36 6.61 -2.91 -0.02 3.34 16 32 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.41 4.75 9.06 -74.06 -0.67 4.08 16 34 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 35 H 0.12 3.89 8.03 -2.91 -0.02 3.86 16 36 H 0.33 10.72 7.05 -89.69 -0.63 10.08 16 Total: -1.00 -67.91 286.21 1.10 -66.81 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.27 Total: 19.82 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 2.29 Total: -37.61 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.46 Total: -87.96 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -1.25 Total: -12.02 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.79 Total: 50.96 kcal Total: -67.91 1.10 -66.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.114 kcal (2) G-P(sol) polarization free energy of solvation -67.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds