Wall clock time and date at job start Mon Mar 30 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47243 * 300.00262 * 3 2 1 6 6 H 1.48503 * 109.46974 * 60.00081 * 3 2 1 7 7 C 1.37880 * 120.00402 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99909 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99801 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.45255 * 300.03088 * 9 7 2 11 11 C 1.53030 * 109.46254 * 180.02562 * 9 7 2 12 12 C 1.53123 * 109.28009 * 180.80258 * 11 9 7 13 13 C 1.53118 * 109.15585 * 57.65675 * 12 11 9 14 14 C 1.53036 * 109.28007 * 302.34276 * 13 12 11 15 15 H 1.08998 * 109.46728 * 299.16963 * 14 13 12 16 16 C 1.50699 * 109.46489 * 179.19698 * 14 13 12 17 17 C 1.38269 * 119.94619 * 279.67395 * 16 14 13 18 18 C 1.38140 * 120.05426 * 179.72102 * 17 16 14 19 19 C 1.38725 * 119.94605 * 0.53306 * 18 17 16 20 20 O 1.35904 * 120.05418 * 179.72472 * 19 18 17 21 21 C 1.38731 * 119.88841 * 359.74262 * 19 18 17 22 22 C 1.38143 * 119.94298 * 0.02562 * 21 19 18 23 23 N 1.46846 * 109.52162 * 59.18140 * 14 13 12 24 24 H 0.96995 * 120.00243 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.50272 * 60.86545 * 11 9 7 26 26 H 1.08997 * 109.53617 * 300.76528 * 11 9 7 27 27 H 1.08993 * 109.52379 * 297.75279 * 12 11 9 28 28 H 1.08997 * 109.57561 * 177.58911 * 12 11 9 29 29 H 1.09008 * 109.50062 * 182.40805 * 13 12 11 30 30 H 1.09000 * 109.50693 * 62.28496 * 13 12 11 31 31 H 1.07998 * 119.97017 * 359.97438 * 17 16 14 32 32 H 1.08009 * 120.02605 * 180.24864 * 18 17 16 33 33 H 0.96700 * 113.99955 * 270.01552 * 20 19 18 34 34 H 1.08002 * 120.02745 * 179.97438 * 21 19 18 35 35 H 1.07995 * 119.97006 * 179.97438 * 22 21 19 36 36 H 1.00904 * 111.00089 * 62.35801 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6246 -2.5566 0.8895 11 6 2.2458 -3.6621 -0.0005 12 6 1.4762 -4.9857 -0.0208 13 6 0.5677 -5.0199 -1.2529 14 6 -0.3784 -3.8175 -1.2166 15 1 -0.9969 -3.8689 -0.3206 16 6 -1.2612 -3.8362 -2.4377 17 6 -0.7782 -3.3685 -3.6459 18 6 -1.5836 -3.3900 -4.7680 19 6 -2.8818 -3.8710 -4.6795 20 8 -3.6779 -3.8879 -5.7808 21 6 -3.3660 -4.3344 -3.4649 22 6 -2.5550 -4.3153 -2.3467 23 7 0.4060 -2.5763 -1.1989 24 1 -0.4850 0.8400 0.0004 25 1 2.8625 -3.6136 0.8970 26 1 2.8821 -3.5976 -0.8832 27 1 0.8699 -5.0684 0.8812 28 1 2.1800 -5.8168 -0.0641 29 1 -0.0147 -5.9413 -1.2502 30 1 1.1770 -4.9763 -2.1556 31 1 0.2310 -2.9899 -3.7133 32 1 -1.2045 -3.0282 -5.7125 33 1 -4.1958 -3.0806 -5.9042 34 1 -4.3765 -4.7090 -3.3933 35 1 -2.9316 -4.6756 -1.4009 36 1 0.9593 -2.4861 -2.0380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260423826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:43 Heat of formation + Delta-G solvation = -27.518777 kcal Electronic energy + Delta-G solvation = -17927.485714 eV Core-core repulsion = 15182.893880 eV Total energy + Delta-G solvation = -2744.591834 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.64591 -38.01698 -36.17587 -32.81408 -31.44357 -30.74036 -30.13060 -27.91289 -25.07514 -23.23584 -22.44575 -21.53298 -20.32623 -19.27326 -18.19880 -16.62313 -15.55795 -15.37129 -14.97648 -14.43693 -14.17441 -13.79870 -13.57582 -13.44774 -13.05806 -12.58671 -12.46936 -11.92873 -11.74770 -11.66850 -11.09334 -10.91097 -10.82083 -10.57144 -10.46901 -10.22072 -10.15179 -9.84129 -9.56272 -8.86767 -8.66812 -8.39286 -8.12402 -6.77147 -5.85280 -3.99753 1.56083 1.67892 3.33078 3.41919 3.44753 3.92577 4.45173 4.49186 5.06649 5.21804 5.22591 5.33764 5.52700 5.57366 5.71256 5.72762 5.83628 6.02547 6.07138 6.12593 6.19798 6.28609 6.34591 6.51965 6.53123 6.66960 6.70956 6.79138 6.88900 7.01241 7.09795 7.14191 7.55784 7.80419 7.93082 8.25206 8.62429 8.91417 9.15333 9.68939 11.18350 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.006806 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.670789 B = 4113.233163 C = 4978.278547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.083 3.917 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.222 3.778 10 H 0.037 0.963 11 C -0.147 4.147 12 C -0.117 4.117 13 C -0.144 4.144 14 C 0.120 3.880 15 H 0.078 0.922 16 C -0.053 4.053 17 C -0.087 4.087 18 C -0.144 4.144 19 C 0.083 3.917 20 O -0.505 6.505 21 C -0.146 4.146 22 C -0.103 4.103 23 N -0.637 5.637 24 H 0.254 0.746 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.384 0.616 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 -7.948 -6.121 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.123 4.123 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.115 3.885 10 H 0.055 0.945 11 C -0.187 4.187 12 C -0.155 4.155 13 C -0.183 4.183 14 C 0.009 3.991 15 H 0.096 0.904 16 C -0.054 4.054 17 C -0.105 4.105 18 C -0.163 4.163 19 C 0.039 3.961 20 O -0.314 6.314 21 C -0.165 4.165 22 C -0.122 4.122 23 N -0.266 5.266 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.239 0.761 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.827 -8.002 -5.908 11.056 hybrid contribution 0.877 0.783 -0.243 1.200 sum -3.949 -7.219 -6.151 10.274 Atomic orbital electron populations 1.70115 1.05597 1.25468 1.46757 1.24968 0.94597 0.98508 0.94269 0.86768 0.80311 0.84703 0.77462 1.19959 1.21148 1.21183 1.21011 0.92311 0.90243 1.53975 0.92805 1.19109 0.88653 0.91123 0.89662 0.94474 1.22372 0.99740 0.95928 1.00637 1.21585 0.98102 0.98271 0.97535 1.22298 0.98552 0.99102 0.98394 1.20558 0.94170 0.90279 0.94142 0.90380 1.20067 0.94301 0.95759 0.95250 1.20877 1.00124 0.97898 0.91599 1.21338 0.94313 1.01517 0.99117 1.18396 0.90516 1.01246 0.85957 1.84800 1.59624 1.43248 1.43743 1.21271 1.00279 1.02805 0.92114 1.20891 0.93477 0.99864 0.97926 1.61175 1.30322 1.29630 1.05463 0.93583 0.92888 0.93471 0.92619 0.93593 0.93017 0.92635 0.85617 0.86009 0.76083 0.86088 0.85967 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.12 12.77 55.43 0.71 -23.41 16 2 C 0.08 2.28 5.39 -17.82 -0.10 2.18 16 3 Si 0.88 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.54 -14.38 8.71 -34.44 -0.30 -14.68 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.22 5.33 2.29 -68.88 -0.16 5.17 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 11 C -0.15 -2.96 5.30 -26.65 -0.14 -3.11 16 12 C -0.12 -2.01 6.00 -26.61 -0.16 -2.17 16 13 C -0.14 -2.39 5.34 -26.65 -0.14 -2.53 16 14 C 0.12 2.24 2.66 -68.88 -0.18 2.06 16 15 H 0.08 1.55 8.00 -51.93 -0.42 1.14 16 16 C -0.05 -0.92 4.96 -104.60 -0.52 -1.44 16 17 C -0.09 -1.45 9.28 -39.61 -0.37 -1.81 16 18 C -0.14 -2.20 9.99 -39.44 -0.39 -2.59 16 19 C 0.08 1.22 6.70 -39.22 -0.26 0.96 16 20 O -0.50 -6.45 13.50 -19.44 -0.26 -6.71 16 21 C -0.15 -2.12 9.99 -39.43 -0.39 -2.51 16 22 C -0.10 -1.61 9.66 -39.61 -0.38 -1.99 16 23 N -0.64 -14.27 5.29 -102.21 -0.54 -14.82 16 24 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.13 2.08 6.60 -52.49 -0.35 1.73 16 32 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 33 H 0.38 3.12 9.06 45.56 0.41 3.53 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.12 1.70 8.03 -52.49 -0.42 1.28 16 36 H 0.32 7.03 6.98 -39.29 -0.27 6.76 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -29.58 296.51 -8.54 -38.12 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.39 Total: 8.84 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -3.50 Total: -22.45 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.17 Total: -38.23 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.26 Total: -6.71 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.58 -8.54 -38.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.598 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds