Wall clock time and date at job start Mon Mar 30 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47243 * 300.00262 * 3 2 1 6 6 H 1.48503 * 109.46974 * 60.00081 * 3 2 1 7 7 C 1.37880 * 120.00402 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99909 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99801 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.45255 * 300.03088 * 9 7 2 11 11 C 1.53030 * 109.46254 * 180.02562 * 9 7 2 12 12 C 1.53123 * 109.28009 * 180.80258 * 11 9 7 13 13 C 1.53118 * 109.15585 * 57.65675 * 12 11 9 14 14 C 1.53036 * 109.28007 * 302.34276 * 13 12 11 15 15 H 1.08998 * 109.46728 * 299.16963 * 14 13 12 16 16 C 1.50699 * 109.46489 * 179.19698 * 14 13 12 17 17 C 1.38269 * 119.94619 * 279.67395 * 16 14 13 18 18 C 1.38140 * 120.05426 * 179.72102 * 17 16 14 19 19 C 1.38725 * 119.94605 * 0.53306 * 18 17 16 20 20 O 1.35904 * 120.05418 * 179.72472 * 19 18 17 21 21 C 1.38731 * 119.88841 * 359.74262 * 19 18 17 22 22 C 1.38143 * 119.94298 * 0.02562 * 21 19 18 23 23 N 1.46846 * 109.52162 * 59.18140 * 14 13 12 24 24 H 0.96995 * 120.00243 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.50272 * 60.86545 * 11 9 7 26 26 H 1.08997 * 109.53617 * 300.76528 * 11 9 7 27 27 H 1.08993 * 109.52379 * 297.75279 * 12 11 9 28 28 H 1.08997 * 109.57561 * 177.58911 * 12 11 9 29 29 H 1.09008 * 109.50062 * 182.40805 * 13 12 11 30 30 H 1.09000 * 109.50693 * 62.28496 * 13 12 11 31 31 H 1.07998 * 119.97017 * 359.97438 * 17 16 14 32 32 H 1.08009 * 120.02605 * 180.24864 * 18 17 16 33 33 H 0.96700 * 113.99955 * 270.01552 * 20 19 18 34 34 H 1.08002 * 120.02745 * 179.97438 * 21 19 18 35 35 H 1.07995 * 119.97006 * 179.97438 * 22 21 19 36 36 H 1.00904 * 111.00089 * 62.35801 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6246 -2.5566 0.8895 11 6 2.2458 -3.6621 -0.0005 12 6 1.4762 -4.9857 -0.0208 13 6 0.5677 -5.0199 -1.2529 14 6 -0.3784 -3.8175 -1.2166 15 1 -0.9969 -3.8689 -0.3206 16 6 -1.2612 -3.8362 -2.4377 17 6 -0.7782 -3.3685 -3.6459 18 6 -1.5836 -3.3900 -4.7680 19 6 -2.8818 -3.8710 -4.6795 20 8 -3.6779 -3.8879 -5.7808 21 6 -3.3660 -4.3344 -3.4649 22 6 -2.5550 -4.3153 -2.3467 23 7 0.4060 -2.5763 -1.1989 24 1 -0.4850 0.8400 0.0004 25 1 2.8625 -3.6136 0.8970 26 1 2.8821 -3.5976 -0.8832 27 1 0.8699 -5.0684 0.8812 28 1 2.1800 -5.8168 -0.0641 29 1 -0.0147 -5.9413 -1.2502 30 1 1.1770 -4.9763 -2.1556 31 1 0.2310 -2.9899 -3.7133 32 1 -1.2045 -3.0282 -5.7125 33 1 -4.1958 -3.0806 -5.9042 34 1 -4.3765 -4.7090 -3.3933 35 1 -2.9316 -4.6756 -1.4009 36 1 0.9593 -2.4861 -2.0380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260423826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:43 Heat of formation + Delta-G solvation = -46.923126 kcal Electronic energy + Delta-G solvation = -17928.327150 eV Core-core repulsion = 15182.893880 eV Total energy + Delta-G solvation = -2745.433270 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89060 -39.41945 -37.39542 -34.73651 -32.89935 -32.06606 -31.72392 -29.31057 -26.98539 -24.63619 -23.67735 -23.12600 -21.75249 -20.85250 -19.28105 -18.51414 -16.99334 -16.61868 -16.41747 -16.08569 -15.61606 -15.31456 -15.01622 -14.85575 -14.33441 -14.17782 -14.04916 -13.37826 -13.26190 -12.94401 -12.83636 -12.59782 -12.43619 -12.16513 -12.13413 -11.72879 -11.47269 -11.39897 -11.27255 -10.74992 -10.49386 -9.85267 -9.35545 -8.46141 -7.92429 -6.14386 0.37345 0.49046 1.42674 1.45750 1.55305 2.48999 2.75253 3.26772 3.39463 3.77832 4.00094 4.03750 4.12196 4.15089 4.24948 4.44581 4.54339 4.55275 4.66967 4.75507 4.90885 4.94966 5.03819 5.11398 5.17539 5.26652 5.32362 5.37126 5.47008 5.51855 5.64901 5.83551 5.84082 5.97342 6.26767 6.71241 6.90063 7.15486 7.19950 7.58051 9.09073 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.006806 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.670789 B = 4113.233163 C = 4978.278547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.037 3.963 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.552 4.552 8 H 0.049 0.951 9 C 0.223 3.777 10 H -0.001 1.001 11 C -0.140 4.140 12 C -0.112 4.112 13 C -0.135 4.135 14 C 0.124 3.876 15 H 0.060 0.940 16 C -0.075 4.075 17 C -0.099 4.099 18 C -0.151 4.151 19 C 0.088 3.912 20 O -0.508 6.508 21 C -0.146 4.146 22 C -0.108 4.108 23 N -0.654 5.654 24 H 0.253 0.747 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.407 0.593 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -8.779 -7.224 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.167 4.167 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.591 4.591 8 H 0.067 0.933 9 C 0.115 3.885 10 H 0.017 0.983 11 C -0.180 4.180 12 C -0.149 4.149 13 C -0.174 4.174 14 C 0.013 3.987 15 H 0.078 0.922 16 C -0.076 4.076 17 C -0.118 4.118 18 C -0.169 4.169 19 C 0.044 3.956 20 O -0.321 6.321 21 C -0.164 4.164 22 C -0.127 4.127 23 N -0.283 5.283 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.156 0.844 33 H 0.265 0.735 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.179 -8.831 -7.017 12.411 hybrid contribution 0.918 1.023 0.057 1.376 sum -4.261 -7.808 -6.960 11.294 Atomic orbital electron populations 1.70246 1.06922 1.26002 1.48064 1.25645 0.95331 1.01598 0.94104 0.85775 0.79220 0.80796 0.77279 1.19428 1.21007 1.20992 1.21375 0.92334 0.91862 1.53479 0.93295 1.18888 0.88861 0.91750 0.88991 0.98260 1.22209 0.99003 0.96290 1.00449 1.21546 0.98372 0.97201 0.97803 1.22191 0.98130 0.98922 0.98159 1.20464 0.94105 0.89715 0.94382 0.92183 1.20000 0.95049 0.97762 0.94741 1.20891 1.00253 0.98514 0.92129 1.21517 0.94588 1.01530 0.99266 1.18485 0.90519 1.00116 0.86479 1.84743 1.59610 1.44896 1.42811 1.21527 1.01181 1.02161 0.91553 1.21071 0.92871 0.99635 0.99074 1.60883 1.30258 1.32569 1.04573 0.93817 0.93207 0.93416 0.92763 0.90850 0.90778 0.92332 0.86337 0.84441 0.73451 0.83641 0.84735 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.19 12.77 21.45 0.27 -50.91 16 2 C 0.04 2.05 5.39 84.65 0.46 2.51 16 3 Si 0.94 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.55 -30.18 8.71 25.60 0.22 -29.96 16 8 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 9 C 0.22 11.01 2.29 44.19 0.10 11.11 16 10 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 11 C -0.14 -5.63 5.30 30.65 0.16 -5.47 16 12 C -0.11 -3.67 6.00 30.67 0.18 -3.49 16 13 C -0.13 -4.29 5.34 30.65 0.16 -4.13 16 14 C 0.12 4.68 2.66 44.19 0.12 4.79 16 15 H 0.06 2.44 8.00 -2.39 -0.02 2.43 16 16 C -0.08 -2.57 4.96 -19.85 -0.10 -2.66 16 17 C -0.10 -3.28 9.28 22.25 0.21 -3.07 16 18 C -0.15 -4.35 9.99 22.36 0.22 -4.13 16 19 C 0.09 2.39 6.70 22.50 0.15 2.54 16 20 O -0.51 -11.43 13.50 -92.47 -1.25 -12.68 16 21 C -0.15 -3.88 9.99 22.37 0.22 -3.65 16 22 C -0.11 -3.23 9.66 22.25 0.21 -3.01 16 23 N -0.65 -29.99 5.29 -477.29 -2.52 -32.51 16 24 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.12 3.97 6.60 -2.91 -0.02 3.95 16 32 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.41 5.29 9.06 -74.06 -0.67 4.62 16 34 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 35 H 0.13 3.57 8.03 -2.91 -0.02 3.55 16 36 H 0.32 14.39 6.98 -89.69 -0.63 13.76 16 Total: -1.00 -63.44 296.51 0.64 -62.79 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.21 Total: 26.22 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 2.33 Total: -38.62 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -2.25 Total: -83.42 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.25 Total: -12.68 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -63.44 0.64 -62.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.871 kcal (2) G-P(sol) polarization free energy of solvation -63.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds