Wall clock time and date at job start Mon Mar 30 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99858 * 2 1 4 4 H 1.48502 * 109.47299 * 270.00666 * 3 2 1 5 5 H 1.48493 * 109.47191 * 30.00314 * 3 2 1 6 6 H 1.48500 * 109.47111 * 150.00730 * 3 2 1 7 7 C 1.37882 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99967 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.45722 * 60.03076 * 9 7 2 11 11 C 1.53039 * 109.46167 * 179.97438 * 9 7 2 12 12 C 1.53123 * 109.31189 * 179.17569 * 11 9 7 13 13 C 1.53129 * 109.15931 * 302.40768 * 12 11 9 14 14 C 1.53036 * 109.30712 * 57.59477 * 13 12 11 15 15 H 1.08995 * 109.46584 * 60.85899 * 14 13 12 16 16 C 1.50702 * 109.45138 * 180.83553 * 14 13 12 17 17 C 1.38264 * 119.94620 * 79.77245 * 16 14 13 18 18 C 1.38146 * 120.05353 * 179.72634 * 17 16 14 19 19 C 1.38734 * 119.94255 * 0.54845 * 18 17 16 20 20 O 1.35899 * 120.05741 * 179.74892 * 19 18 17 21 21 C 1.38728 * 119.89052 * 359.72492 * 19 18 17 22 22 C 1.38146 * 119.94331 * 359.97438 * 21 19 18 23 23 N 1.46842 * 109.46675 * 300.05090 * 9 7 2 24 24 H 0.96999 * 119.99810 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50563 * 299.13901 * 11 9 7 26 26 H 1.09003 * 109.50107 * 59.21883 * 11 9 7 27 27 H 1.09000 * 109.52057 * 62.27355 * 12 11 9 28 28 H 1.08995 * 109.52240 * 182.46183 * 12 11 9 29 29 H 1.09000 * 109.46579 * 297.65836 * 13 12 11 30 30 H 1.08997 * 109.53656 * 177.57437 * 13 12 11 31 31 H 1.07996 * 119.97096 * 0.02562 * 17 16 14 32 32 H 1.07992 * 120.03053 * 180.27250 * 18 17 16 33 33 H 0.96700 * 114.00200 * 269.97914 * 20 19 18 34 34 H 1.08004 * 120.03434 * 180.02562 * 21 19 18 35 35 H 1.08000 * 119.97222 * 180.02562 * 22 21 19 36 36 H 1.00898 * 111.00242 * 302.34579 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6245 -2.5567 -0.8907 11 6 2.2458 -3.6622 -0.0018 12 6 1.4768 -4.9862 0.0190 13 6 0.5684 -5.0205 1.2512 14 6 -0.3776 -3.8180 1.2161 15 1 -0.9968 -3.8691 0.3205 16 6 -1.2594 -3.8373 2.4380 17 6 -0.7715 -3.3808 3.6485 18 6 -1.5797 -3.3922 4.7688 19 6 -2.8782 -3.8728 4.6811 20 8 -3.6736 -3.8899 5.7829 21 6 -3.3635 -4.3356 3.4667 22 6 -2.5533 -4.3163 2.3479 23 7 0.4064 -2.5765 1.1982 24 1 -0.4850 0.8401 0.0004 25 1 2.8618 -3.6132 -0.8997 26 1 2.8826 -3.5974 0.8805 27 1 0.8699 -5.0691 -0.8827 28 1 2.1818 -5.8162 0.0622 29 1 1.1784 -4.9773 2.1535 30 1 -0.0139 -5.9418 1.2493 31 1 0.2407 -3.0105 3.7171 32 1 -1.1996 -3.0315 5.7131 33 1 -3.6165 -4.7071 6.2966 34 1 -4.3741 -4.7099 3.3956 35 1 -2.9308 -4.6760 1.4021 36 1 0.9599 -2.4866 2.0370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260423832.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:46 Heat of formation + Delta-G solvation = -47.139559 kcal Electronic energy + Delta-G solvation = -17925.916507 eV Core-core repulsion = 15180.473852 eV Total energy + Delta-G solvation = -2745.442655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89150 -39.42086 -37.40183 -34.73878 -32.89851 -32.06443 -31.72549 -29.31193 -26.98473 -24.63571 -23.67689 -23.12948 -21.75236 -20.84645 -19.29106 -18.51105 -17.01220 -16.61774 -16.43147 -16.06259 -15.58357 -15.32489 -15.01499 -14.84748 -14.28045 -14.17574 -14.14716 -13.49614 -13.12477 -12.87226 -12.78814 -12.61294 -12.48201 -12.20770 -12.13341 -11.73973 -11.46376 -11.40037 -11.26946 -10.75533 -10.48925 -9.85137 -9.35755 -8.45463 -7.92668 -6.14922 0.37646 0.48825 1.43416 1.45273 1.53902 2.48708 2.77094 3.26743 3.36275 3.78006 4.00209 4.03266 4.13419 4.15880 4.25620 4.44960 4.54521 4.55346 4.67422 4.75969 4.91098 4.95471 5.04828 5.11914 5.17958 5.27025 5.32704 5.37601 5.47223 5.51925 5.64687 5.83390 5.83821 5.98530 6.26416 6.70977 6.92937 7.15879 7.19970 7.57740 9.08542 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.006779 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.312416 B = 4129.151185 C = 4983.042627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.036 3.964 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.050 0.950 9 C 0.223 3.777 10 H -0.002 1.002 11 C -0.140 4.140 12 C -0.112 4.112 13 C -0.133 4.133 14 C 0.124 3.876 15 H 0.059 0.941 16 C -0.075 4.075 17 C -0.100 4.100 18 C -0.151 4.151 19 C 0.089 3.911 20 O -0.508 6.508 21 C -0.146 4.146 22 C -0.108 4.108 23 N -0.656 5.656 24 H 0.252 0.748 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.408 0.592 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 -12.058 8.036 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.168 4.168 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.591 4.591 8 H 0.068 0.932 9 C 0.115 3.885 10 H 0.016 0.984 11 C -0.179 4.179 12 C -0.149 4.149 13 C -0.173 4.173 14 C 0.013 3.987 15 H 0.077 0.923 16 C -0.075 4.075 17 C -0.118 4.118 18 C -0.169 4.169 19 C 0.045 3.955 20 O -0.321 6.321 21 C -0.165 4.165 22 C -0.127 4.127 23 N -0.285 5.285 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.156 0.844 33 H 0.266 0.734 34 H 0.164 0.836 35 H 0.152 0.848 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.376 -11.005 7.568 14.054 hybrid contribution 1.217 0.166 0.135 1.235 sum -3.159 -10.839 7.703 13.667 Atomic orbital electron populations 1.70244 1.06992 1.26063 1.48014 1.25661 0.95314 1.01671 0.94109 0.85823 0.78878 0.80415 0.77933 1.20426 1.21471 1.19416 1.21354 0.92354 0.91869 1.53557 0.93217 1.18880 0.88864 0.91782 0.88932 0.98365 1.22209 0.98985 0.96294 1.00457 1.21552 0.98383 0.97163 0.97847 1.22182 0.98079 0.98856 0.98161 1.20466 0.94141 0.89765 0.94319 0.92305 1.20001 0.95084 0.97780 0.94671 1.20891 1.00227 0.98520 0.92180 1.21521 0.93552 1.02173 0.99670 1.18491 0.89436 1.00139 0.87475 1.84777 1.64745 1.44658 1.37918 1.21528 1.00970 1.01626 0.92331 1.21069 0.92868 0.99686 0.99070 1.60867 1.30314 1.32702 1.04588 0.93857 0.93219 0.93378 0.92832 0.90747 0.92213 0.90599 0.86329 0.84430 0.73365 0.83645 0.84758 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.06 12.77 21.45 0.27 -51.79 16 2 C 0.04 2.03 5.39 84.66 0.46 2.48 16 3 Si 0.94 44.16 29.54 68.60 2.03 46.19 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.55 -30.43 8.71 25.60 0.22 -30.21 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 9 C 0.22 11.08 2.29 44.19 0.10 11.19 16 10 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 11 C -0.14 -5.62 5.30 30.65 0.16 -5.45 16 12 C -0.11 -3.64 6.01 30.68 0.18 -3.46 16 13 C -0.13 -4.17 5.33 30.65 0.16 -4.01 16 14 C 0.12 4.67 2.66 44.19 0.12 4.79 16 15 H 0.06 2.41 8.00 -2.39 -0.02 2.39 16 16 C -0.07 -2.56 4.95 -19.85 -0.10 -2.66 16 17 C -0.10 -3.28 9.27 22.25 0.21 -3.08 16 18 C -0.15 -4.35 9.99 22.37 0.22 -4.13 16 19 C 0.09 2.40 6.70 22.51 0.15 2.56 16 20 O -0.51 -11.42 13.50 -92.42 -1.25 -12.67 16 21 C -0.15 -3.89 9.99 22.37 0.22 -3.66 16 22 C -0.11 -3.24 9.66 22.25 0.22 -3.03 16 23 N -0.66 -30.35 5.30 -477.28 -2.53 -32.88 16 24 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.12 3.96 6.63 -2.91 -0.02 3.94 16 32 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.41 4.61 9.06 -74.06 -0.67 3.94 16 34 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.13 3.57 8.03 -2.91 -0.02 3.55 16 36 H 0.32 14.50 6.99 -89.70 -0.63 13.87 16 Total: -1.00 -64.95 296.54 0.64 -64.32 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.22 Total: 25.49 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 2.33 Total: -38.66 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -2.25 Total: -84.67 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -1.25 Total: -12.67 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -64.95 0.64 -64.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423832.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.176 kcal (2) G-P(sol) polarization free energy of solvation -64.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds