Wall clock time and date at job start Mon Mar 30 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00357 * 2 1 4 4 H 1.48503 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46666 * 299.99688 * 3 2 1 6 6 H 1.48493 * 109.47397 * 59.99719 * 3 2 1 7 7 C 1.37880 * 119.99558 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99670 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00315 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46901 * 299.99862 * 9 7 2 11 11 N 1.46904 * 109.47083 * 59.99613 * 9 7 2 12 12 C 1.50702 * 109.47247 * 179.97438 * 9 7 2 13 13 C 1.38232 * 119.99974 * 99.99909 * 12 9 7 14 14 C 1.38237 * 119.99957 * 179.97438 * 13 12 9 15 15 C 1.38232 * 119.99829 * 359.97290 * 14 13 12 16 16 C 1.50706 * 119.99870 * 180.02562 * 15 14 13 17 17 H 1.08993 * 110.74995 * 356.53426 * 16 15 14 18 18 C 1.55304 * 110.84438 * 120.00415 * 16 15 14 19 19 C 1.54944 * 100.97800 * 152.30294 * 18 16 15 20 20 O 1.43693 * 105.11450 * 323.61333 * 19 18 16 21 21 C 1.43240 * 109.99409 * 24.36003 * 20 19 18 22 22 C 1.38235 * 119.99991 * 0.28110 * 15 14 13 23 23 C 1.38234 * 120.00253 * 359.53267 * 22 15 14 24 24 H 0.97006 * 120.00079 * 0.02562 * 1 2 3 25 25 H 1.00902 * 110.99971 * 60.00168 * 11 9 7 26 26 H 1.00902 * 110.99847 * 183.95627 * 11 9 7 27 27 H 1.08000 * 120.00170 * 359.97438 * 13 12 9 28 28 H 1.07997 * 120.00187 * 179.97438 * 14 13 12 29 29 H 1.09002 * 111.12488 * 270.24270 * 18 16 15 30 30 H 1.08995 * 111.12730 * 34.36265 * 18 16 15 31 31 H 1.08996 * 110.31114 * 82.48962 * 19 18 16 32 32 H 1.09004 * 110.31323 * 204.65778 * 19 18 16 33 33 H 1.09001 * 109.83319 * 238.81565 * 21 20 19 34 34 H 1.08996 * 109.83048 * 117.84247 * 21 20 19 35 35 H 1.08003 * 119.99835 * 179.72060 * 22 15 14 36 36 H 1.08000 * 120.00339 * 180.23167 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 0.4067 -2.5773 -1.1992 12 6 2.2301 -3.6447 0.0005 13 6 2.5212 -4.3052 1.1795 14 6 3.4191 -5.3562 1.1794 15 6 4.0254 -5.7472 0.0002 16 6 5.0038 -6.8935 0.0000 17 1 5.1667 -7.2623 1.0126 18 6 4.5165 -8.0358 -0.9325 19 6 5.8658 -8.6768 -1.3438 20 8 6.7823 -7.5765 -1.4634 21 6 6.3365 -6.4781 -0.6594 22 6 3.7382 -5.0834 -1.1778 23 6 2.8375 -4.0348 -1.1784 24 1 -0.4850 0.8401 -0.0004 25 1 0.9650 -2.5260 -2.0381 26 1 -0.1573 -3.4139 -1.1907 27 1 2.0472 -4.0000 2.1007 28 1 3.6469 -5.8720 2.1005 29 1 3.8930 -8.7466 -0.3903 30 1 3.9903 -7.6373 -1.7999 31 1 6.2057 -9.3697 -0.5741 32 1 5.7646 -9.1915 -2.2993 33 1 6.1810 -5.6001 -1.2863 34 1 7.0769 -6.2584 0.1097 35 1 4.2153 -5.3859 -2.0983 36 1 2.6103 -3.5185 -2.0994 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260423927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:21 Heat of formation + Delta-G solvation = -46.270160 kcal Electronic energy + Delta-G solvation = -17520.296547 eV Core-core repulsion = 14774.891592 eV Total energy + Delta-G solvation = -2745.404955 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04489 -39.61263 -36.57053 -34.22888 -33.10884 -31.73891 -30.85887 -29.28542 -27.79165 -24.75768 -23.79406 -23.26642 -22.14663 -20.94010 -18.50392 -17.95650 -17.36754 -16.79143 -16.40328 -16.06738 -15.81188 -15.54642 -15.40741 -14.43744 -14.35066 -14.19934 -14.06228 -13.74909 -13.46879 -13.14515 -12.78719 -12.65211 -12.45147 -12.25790 -12.04507 -12.01037 -11.60049 -11.54508 -11.20555 -10.57465 -10.49950 -9.74339 -9.33845 -8.86334 -7.99757 -6.21458 0.52974 0.57698 1.40333 1.42800 1.53273 2.44670 2.87451 2.97461 3.23888 3.62106 3.74485 3.94550 4.10539 4.17329 4.27344 4.30186 4.33820 4.38108 4.45748 4.69267 4.73734 4.80880 4.86635 4.92968 5.00058 5.11959 5.19207 5.23669 5.37713 5.61596 5.70691 5.74812 5.95977 6.02572 6.13059 6.24454 6.64391 7.08869 7.25260 7.51112 9.03605 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.038217 B = 0.004878 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.478604 B = 5738.620494 C = 5987.814504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.043 0.957 9 C 0.256 3.744 10 H 0.010 0.990 11 N -0.820 5.820 12 C -0.097 4.097 13 C -0.136 4.136 14 C -0.110 4.110 15 C -0.093 4.093 16 C -0.071 4.071 17 H 0.107 0.893 18 C -0.144 4.144 19 C 0.047 3.953 20 O -0.408 6.408 21 C 0.055 3.945 22 C -0.112 4.112 23 C -0.129 4.129 24 H 0.256 0.744 25 H 0.323 0.677 26 H 0.311 0.689 27 H 0.113 0.887 28 H 0.143 0.857 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.562 -16.658 -0.557 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.168 4.168 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.061 0.939 9 C 0.147 3.853 10 H 0.028 0.972 11 N -0.347 5.347 12 C -0.099 4.099 13 C -0.155 4.155 14 C -0.128 4.128 15 C -0.094 4.094 16 C -0.090 4.090 17 H 0.125 0.875 18 C -0.182 4.182 19 C -0.028 4.028 20 O -0.328 6.328 21 C -0.021 4.021 22 C -0.130 4.130 23 C -0.147 4.147 24 H 0.065 0.935 25 H 0.136 0.864 26 H 0.122 0.878 27 H 0.131 0.869 28 H 0.161 0.839 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.227 -15.857 -0.418 18.350 hybrid contribution 0.368 0.525 -0.036 0.643 sum 9.595 -15.331 -0.455 18.092 Atomic orbital electron populations 1.70234 1.07005 1.26327 1.48029 1.25673 0.95428 1.01758 0.93972 0.85698 0.78968 0.80366 0.77621 1.19674 1.20638 1.20517 1.21139 0.91906 0.91139 1.53813 0.93906 1.17875 0.87816 0.89793 0.89861 0.97219 1.59014 1.28486 1.42984 1.04197 1.21424 0.98150 0.96393 0.93965 1.21169 0.99774 0.96966 0.97548 1.21206 0.96425 0.96734 0.98425 1.19605 0.98949 0.97737 0.93072 1.21627 0.92580 0.93229 1.01556 0.87455 1.23380 0.98119 0.97126 0.99568 1.23580 0.87337 0.89207 1.02718 1.88376 1.50072 1.25215 1.69153 1.23300 0.94940 0.89715 0.94188 1.21030 0.97822 0.95743 0.98431 1.20952 0.98155 0.97902 0.97717 0.93535 0.86424 0.87834 0.86917 0.83904 0.88054 0.90775 0.90600 0.88550 0.91820 0.90566 0.85175 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.05 12.77 21.45 0.27 -51.78 16 2 C 0.04 1.99 5.39 84.66 0.46 2.44 16 3 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.54 -30.27 8.70 25.60 0.22 -30.05 16 8 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 9 C 0.26 12.95 2.85 43.42 0.12 13.08 16 10 H 0.01 0.56 8.01 -2.39 -0.02 0.54 16 11 N -0.82 -39.08 8.36 -174.94 -1.46 -40.54 16 12 C -0.10 -4.06 4.88 -19.87 -0.10 -4.16 16 13 C -0.14 -5.03 9.67 22.27 0.22 -4.81 16 14 C -0.11 -3.21 9.69 22.27 0.22 -2.99 16 15 C -0.09 -2.52 4.96 -19.86 -0.10 -2.61 16 16 C -0.07 -1.44 3.22 -10.28 -0.03 -1.47 16 17 H 0.11 1.79 7.96 -2.39 -0.02 1.77 16 18 C -0.14 -2.44 6.56 32.05 0.21 -2.23 16 19 C 0.05 0.77 7.78 72.65 0.57 1.33 16 20 O -0.41 -9.41 11.36 -148.98 -1.69 -11.11 16 21 C 0.05 1.20 7.26 72.45 0.53 1.73 16 22 C -0.11 -3.40 8.10 22.27 0.18 -3.21 16 23 C -0.13 -4.78 9.29 22.27 0.21 -4.57 16 24 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 25 H 0.32 14.59 7.34 -89.69 -0.66 13.93 16 26 H 0.31 13.25 9.06 -89.69 -0.81 12.43 16 27 H 0.11 4.16 8.04 -2.91 -0.02 4.13 16 28 H 0.14 3.22 7.98 -2.91 -0.02 3.19 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.40 7.24 -2.39 -0.02 1.38 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.06 1.55 6.62 -2.39 -0.02 1.53 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.13 3.41 7.30 -2.91 -0.02 3.39 16 36 H 0.11 4.15 6.66 -2.91 -0.02 4.13 16 Total: -1.00 -64.53 296.53 1.46 -63.07 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.38 Total: 31.52 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 2.69 Total: -37.53 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -1.19 Total: -92.32 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -1.69 Total: -11.11 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -64.53 1.46 -63.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.796 kcal (2) G-P(sol) polarization free energy of solvation -64.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds