Wall clock time and date at job start Mon Mar 30 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99930 * 2 1 4 4 H 1.48501 * 109.47124 * 240.00089 * 3 2 1 5 5 H 1.48501 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46612 * 120.00486 * 3 2 1 7 7 C 1.37879 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99852 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47439 * 60.00001 * 9 7 2 11 11 N 1.46905 * 109.47225 * 300.00049 * 9 7 2 12 12 C 1.50707 * 109.46928 * 180.02562 * 9 7 2 13 13 C 1.38231 * 119.99886 * 259.99901 * 12 9 7 14 14 C 1.38226 * 119.99754 * 179.97438 * 13 12 9 15 15 C 1.38235 * 120.00379 * 359.97438 * 14 13 12 16 16 C 1.50707 * 120.00172 * 180.02562 * 15 14 13 17 17 H 1.08991 * 110.75071 * 356.52419 * 16 15 14 18 18 C 1.55304 * 110.84582 * 119.99964 * 16 15 14 19 19 C 1.54944 * 100.97800 * 152.50393 * 18 16 15 20 20 O 1.43693 * 105.11450 * 323.61333 * 19 18 16 21 21 C 1.43240 * 109.99409 * 24.36003 * 20 19 18 22 22 C 1.38233 * 119.99664 * 0.27688 * 15 14 13 23 23 C 1.38233 * 120.00127 * 359.50983 * 22 15 14 24 24 H 0.97005 * 119.99880 * 359.97438 * 1 2 3 25 25 H 1.00892 * 110.99895 * 176.04843 * 11 9 7 26 26 H 1.00900 * 110.99757 * 300.00211 * 11 9 7 27 27 H 1.07999 * 119.99997 * 359.97438 * 13 12 9 28 28 H 1.08004 * 120.00201 * 180.02562 * 14 13 12 29 29 H 1.09002 * 111.12488 * 270.44368 * 18 16 15 30 30 H 1.08995 * 111.12730 * 34.56364 * 18 16 15 31 31 H 1.08996 * 110.31114 * 82.48962 * 19 18 16 32 32 H 1.09004 * 110.31323 * 204.65778 * 19 18 16 33 33 H 1.09001 * 109.83319 * 238.81565 * 21 20 19 34 34 H 1.08996 * 109.83048 * 117.84247 * 21 20 19 35 35 H 1.08010 * 120.00000 * 179.73207 * 22 15 14 36 36 H 1.08001 * 120.00059 * 180.27502 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8902 11 7 0.4069 -2.5773 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.5215 -4.3050 -1.1795 14 6 3.4202 -5.3553 -1.1795 15 6 4.0282 -5.7449 -0.0008 16 6 5.0084 -6.8896 -0.0010 17 1 5.0787 -7.3376 -0.9921 18 6 6.4040 -6.4222 0.4947 19 6 6.9644 -7.7408 1.0847 20 8 5.8322 -8.3963 1.6791 21 6 4.6235 -7.9484 1.0545 22 6 3.7331 -5.0878 1.1791 23 6 2.8377 -4.0346 1.1784 24 1 -0.4850 0.8401 0.0004 25 1 -0.1570 -3.4138 1.1907 26 1 0.9652 -2.5260 2.0381 27 1 2.0468 -4.0004 -2.1005 28 1 3.6480 -5.8711 -2.1007 29 1 7.0180 -6.0707 -0.3346 30 1 6.3113 -5.6558 1.2640 31 1 7.3870 -8.3599 0.2934 32 1 7.7187 -7.5261 1.8417 33 1 3.9643 -7.5044 1.8005 34 1 4.1241 -8.7880 0.5710 35 1 4.2049 -5.3950 2.1008 36 1 2.6106 -3.5184 2.0995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260423931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:24 Heat of formation + Delta-G solvation = -27.142095 kcal Electronic energy + Delta-G solvation = -17519.116781 eV Core-core repulsion = 14774.541280 eV Total energy + Delta-G solvation = -2744.575500 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.96156 -38.39264 -34.92313 -32.74159 -31.38622 -30.40267 -29.81079 -27.98955 -25.86075 -23.29323 -22.42434 -22.40334 -20.76124 -19.59715 -16.91978 -16.49005 -16.33409 -15.31898 -14.89813 -14.80717 -14.24409 -14.21600 -13.93068 -13.34390 -13.07697 -12.80822 -12.67497 -12.27318 -12.09407 -11.61932 -11.33152 -11.21853 -11.06005 -10.86775 -10.79607 -10.54548 -10.31228 -9.81129 -9.63049 -9.24860 -8.44479 -8.38919 -7.86285 -7.07742 -5.88960 -4.04189 1.89180 1.93757 3.34043 3.38898 3.41444 3.77384 4.20255 4.48007 4.58924 4.66996 4.90328 5.07599 5.12114 5.23513 5.34937 5.43326 5.45810 5.57094 5.67120 5.73671 5.82772 5.86107 5.96664 6.11616 6.18730 6.33694 6.52815 6.60773 6.86091 7.00248 7.04030 7.10521 7.58202 7.58690 7.88906 8.17372 8.61667 8.99003 9.13427 9.64477 11.15256 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.037687 B = 0.004886 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.778419 B = 5729.650422 C = 5974.797082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.252 3.748 10 H 0.046 0.954 11 N -0.810 5.810 12 C -0.069 4.069 13 C -0.121 4.121 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.074 4.074 17 H 0.086 0.914 18 C -0.149 4.149 19 C 0.050 3.950 20 O -0.388 6.388 21 C 0.056 3.944 22 C -0.116 4.116 23 C -0.119 4.119 24 H 0.256 0.744 25 H 0.298 0.702 26 H 0.317 0.683 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.603 -13.397 0.233 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.142 3.858 10 H 0.064 0.936 11 N -0.335 5.335 12 C -0.071 4.071 13 C -0.139 4.139 14 C -0.134 4.134 15 C -0.108 4.108 16 C -0.092 4.092 17 H 0.105 0.895 18 C -0.186 4.186 19 C -0.026 4.026 20 O -0.308 6.308 21 C -0.020 4.020 22 C -0.134 4.134 23 C -0.137 4.137 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.129 0.871 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.069 -12.735 0.135 15.634 hybrid contribution 1.087 0.284 -0.042 1.125 sum 10.156 -12.451 0.092 16.068 Atomic orbital electron populations 1.70094 1.05671 1.25836 1.46540 1.24947 0.94646 0.98523 0.94173 0.86812 0.79738 0.83657 0.78546 1.20376 1.21297 1.20347 1.20776 0.92144 0.89435 1.54629 0.92952 1.18227 0.87590 0.88978 0.90987 0.93606 1.59206 1.28059 1.41960 1.04307 1.21825 0.97025 0.96145 0.92138 1.21087 0.98644 0.95787 0.98416 1.20913 0.97744 0.98015 0.96715 1.19257 0.99469 0.98061 0.94034 1.21565 0.93834 0.94151 0.99674 0.89537 1.23388 0.95553 0.98051 1.01656 1.23389 0.89455 0.92274 0.97483 1.88386 1.14779 1.66634 1.60974 1.23309 0.87370 0.96306 0.95023 1.20840 0.98908 0.96760 0.96925 1.20963 0.97349 0.96723 0.98699 0.93364 0.89185 0.87010 0.86424 0.87148 0.89852 0.89858 0.92339 0.89836 0.90628 0.91487 0.87104 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.48 12.77 55.43 0.71 -23.77 16 2 C 0.08 2.33 5.39 -17.82 -0.10 2.23 16 3 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -14.43 8.70 -34.44 -0.30 -14.73 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.25 6.13 2.85 -70.01 -0.20 5.93 16 10 H 0.05 1.23 8.00 -51.93 -0.42 0.81 16 11 N -0.81 -18.73 8.36 -6.65 -0.06 -18.79 16 12 C -0.07 -1.42 4.88 -104.62 -0.51 -1.93 16 13 C -0.12 -2.24 9.67 -39.59 -0.38 -2.62 16 14 C -0.12 -1.82 9.68 -39.59 -0.38 -2.21 16 15 C -0.11 -1.60 4.97 -104.62 -0.52 -2.12 16 16 C -0.07 -0.88 3.21 -89.82 -0.29 -1.16 16 17 H 0.09 0.93 7.96 -51.93 -0.41 0.52 16 18 C -0.15 -1.60 6.55 -24.48 -0.16 -1.76 16 19 C 0.05 0.51 7.78 38.18 0.30 0.80 16 20 O -0.39 -4.96 11.36 -35.23 -0.40 -5.36 16 21 C 0.06 0.67 7.27 37.88 0.28 0.95 16 22 C -0.12 -1.85 8.11 -39.58 -0.32 -2.17 16 23 C -0.12 -2.21 9.29 -39.58 -0.37 -2.58 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.30 6.18 9.06 -39.30 -0.36 5.83 16 26 H 0.32 6.99 7.34 -39.29 -0.29 6.70 16 27 H 0.12 2.12 8.04 -52.49 -0.42 1.69 16 28 H 0.11 1.45 7.98 -52.48 -0.42 1.04 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.97 7.24 -51.93 -0.38 0.59 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.94 6.65 -51.93 -0.35 0.60 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.11 1.57 7.31 -52.48 -0.38 1.18 16 36 H 0.12 2.15 6.66 -52.49 -0.35 1.80 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -29.60 296.57 -8.26 -37.86 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.00 Total: 10.76 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -2.96 Total: -21.37 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.65 Total: -42.56 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.40 Total: -5.36 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.60 -8.26 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.715 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds