Wall clock time and date at job start Mon Mar 30 2020 06:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99930 * 2 1 4 4 H 1.48501 * 109.47124 * 240.00089 * 3 2 1 5 5 H 1.48501 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46612 * 120.00486 * 3 2 1 7 7 C 1.37879 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99852 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47439 * 60.00001 * 9 7 2 11 11 N 1.46905 * 109.47225 * 300.00049 * 9 7 2 12 12 C 1.50707 * 109.46928 * 180.02562 * 9 7 2 13 13 C 1.38231 * 119.99886 * 259.99901 * 12 9 7 14 14 C 1.38226 * 119.99754 * 179.97438 * 13 12 9 15 15 C 1.38235 * 120.00379 * 359.97438 * 14 13 12 16 16 C 1.50707 * 120.00172 * 180.02562 * 15 14 13 17 17 H 1.08991 * 110.75071 * 356.52419 * 16 15 14 18 18 C 1.55304 * 110.84582 * 119.99964 * 16 15 14 19 19 C 1.54944 * 100.97800 * 152.50393 * 18 16 15 20 20 O 1.43693 * 105.11450 * 323.61333 * 19 18 16 21 21 C 1.43240 * 109.99409 * 24.36003 * 20 19 18 22 22 C 1.38233 * 119.99664 * 0.27688 * 15 14 13 23 23 C 1.38233 * 120.00127 * 359.50983 * 22 15 14 24 24 H 0.97005 * 119.99880 * 359.97438 * 1 2 3 25 25 H 1.00892 * 110.99895 * 176.04843 * 11 9 7 26 26 H 1.00900 * 110.99757 * 300.00211 * 11 9 7 27 27 H 1.07999 * 119.99997 * 359.97438 * 13 12 9 28 28 H 1.08004 * 120.00201 * 180.02562 * 14 13 12 29 29 H 1.09002 * 111.12488 * 270.44368 * 18 16 15 30 30 H 1.08995 * 111.12730 * 34.56364 * 18 16 15 31 31 H 1.08996 * 110.31114 * 82.48962 * 19 18 16 32 32 H 1.09004 * 110.31323 * 204.65778 * 19 18 16 33 33 H 1.09001 * 109.83319 * 238.81565 * 21 20 19 34 34 H 1.08996 * 109.83048 * 117.84247 * 21 20 19 35 35 H 1.08010 * 120.00000 * 179.73207 * 22 15 14 36 36 H 1.08001 * 120.00059 * 180.27502 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8902 11 7 0.4069 -2.5773 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.5215 -4.3050 -1.1795 14 6 3.4202 -5.3553 -1.1795 15 6 4.0282 -5.7449 -0.0008 16 6 5.0084 -6.8896 -0.0010 17 1 5.0787 -7.3376 -0.9921 18 6 6.4040 -6.4222 0.4947 19 6 6.9644 -7.7408 1.0847 20 8 5.8322 -8.3963 1.6791 21 6 4.6235 -7.9484 1.0545 22 6 3.7331 -5.0878 1.1791 23 6 2.8377 -4.0346 1.1784 24 1 -0.4850 0.8401 0.0004 25 1 -0.1570 -3.4138 1.1907 26 1 0.9652 -2.5260 2.0381 27 1 2.0468 -4.0004 -2.1005 28 1 3.6480 -5.8711 -2.1007 29 1 7.0180 -6.0707 -0.3346 30 1 6.3113 -5.6558 1.2640 31 1 7.3870 -8.3599 0.2934 32 1 7.7187 -7.5261 1.8417 33 1 3.9643 -7.5044 1.8005 34 1 4.1241 -8.7880 0.5710 35 1 4.2049 -5.3950 2.1008 36 1 2.6106 -3.5184 2.0995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260423931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:23 Heat of formation + Delta-G solvation = -46.162040 kcal Electronic energy + Delta-G solvation = -17519.941547 eV Core-core repulsion = 14774.541280 eV Total energy + Delta-G solvation = -2745.400267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04211 -39.61328 -36.56835 -34.22609 -33.10734 -31.73956 -30.86312 -29.28320 -27.78990 -24.75475 -23.79144 -23.26886 -22.14692 -20.93983 -18.49522 -17.95600 -17.36843 -16.78870 -16.40534 -16.06839 -15.81442 -15.53228 -15.40371 -14.44846 -14.32397 -14.19691 -14.07379 -13.81072 -13.44773 -13.04296 -12.79069 -12.69906 -12.43544 -12.27997 -12.09168 -11.99636 -11.59892 -11.52958 -11.22099 -10.55988 -10.49734 -9.74437 -9.34072 -8.86231 -7.99095 -6.21117 0.52913 0.57653 1.42686 1.43341 1.51047 2.45004 2.87087 2.98138 3.24372 3.60623 3.74765 3.96008 4.10259 4.17706 4.26532 4.29494 4.33975 4.37916 4.45759 4.69363 4.73772 4.80549 4.86585 4.92932 4.99849 5.11901 5.18996 5.23479 5.37697 5.61502 5.70630 5.74547 5.96020 6.02447 6.13146 6.24431 6.64331 7.08798 7.25240 7.51361 9.03926 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.037687 B = 0.004886 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.778419 B = 5729.650422 C = 5974.797082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.948 3.052 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.043 0.957 9 C 0.257 3.743 10 H 0.010 0.990 11 N -0.820 5.820 12 C -0.097 4.097 13 C -0.136 4.136 14 C -0.110 4.110 15 C -0.093 4.093 16 C -0.072 4.072 17 H 0.107 0.893 18 C -0.147 4.147 19 C 0.049 3.951 20 O -0.408 6.408 21 C 0.056 3.944 22 C -0.112 4.112 23 C -0.129 4.129 24 H 0.256 0.744 25 H 0.310 0.690 26 H 0.323 0.677 27 H 0.113 0.887 28 H 0.143 0.857 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.130 0.870 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.791 -14.766 0.058 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.168 4.168 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.062 0.938 9 C 0.147 3.853 10 H 0.027 0.973 11 N -0.347 5.347 12 C -0.099 4.099 13 C -0.155 4.155 14 C -0.128 4.128 15 C -0.093 4.093 16 C -0.090 4.090 17 H 0.125 0.875 18 C -0.185 4.185 19 C -0.027 4.027 20 O -0.328 6.328 21 C -0.020 4.020 22 C -0.130 4.130 23 C -0.147 4.147 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.161 0.839 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.148 0.852 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.272 -14.114 -0.041 18.063 hybrid contribution 0.461 0.595 0.013 0.753 sum 11.733 -13.519 -0.028 17.900 Atomic orbital electron populations 1.70221 1.07038 1.26469 1.47861 1.25682 0.95429 1.01777 0.93952 0.85813 0.78515 0.79708 0.78636 1.19851 1.20914 1.19895 1.21078 0.91908 0.91120 1.54046 0.93850 1.17869 0.87808 0.89805 0.89833 0.97260 1.59015 1.28497 1.42977 1.04211 1.21425 0.98120 0.96415 0.93964 1.21165 0.99775 0.96969 0.97546 1.21204 0.96303 0.96810 0.98471 1.19601 0.98691 0.97964 0.93078 1.21622 0.93465 0.92953 1.00960 0.87467 1.23390 0.95010 0.98201 1.01888 1.23556 0.88905 0.91887 0.98338 1.88372 1.15564 1.67140 1.61694 1.23299 0.87274 0.96669 0.94744 1.21030 0.97900 0.95687 0.98402 1.20950 0.98232 0.97828 0.97707 0.93528 0.87854 0.86431 0.86935 0.83914 0.88338 0.90983 0.90553 0.88645 0.91601 0.90302 0.85171 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.08 12.77 21.45 0.27 -51.81 16 2 C 0.04 1.98 5.39 84.66 0.46 2.44 16 3 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -30.27 8.70 25.60 0.22 -30.05 16 8 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 9 C 0.26 12.98 2.85 43.42 0.12 13.10 16 10 H 0.01 0.54 8.00 -2.39 -0.02 0.52 16 11 N -0.82 -39.20 8.36 -174.94 -1.46 -40.66 16 12 C -0.10 -4.06 4.88 -19.86 -0.10 -4.16 16 13 C -0.14 -5.03 9.67 22.27 0.22 -4.82 16 14 C -0.11 -3.21 9.68 22.27 0.22 -2.99 16 15 C -0.09 -2.51 4.97 -19.86 -0.10 -2.61 16 16 C -0.07 -1.44 3.21 -10.28 -0.03 -1.47 16 17 H 0.11 1.78 7.96 -2.39 -0.02 1.76 16 18 C -0.15 -2.65 6.55 32.05 0.21 -2.44 16 19 C 0.05 0.81 7.78 72.65 0.57 1.38 16 20 O -0.41 -9.23 11.36 -148.98 -1.69 -10.92 16 21 C 0.06 1.18 7.27 72.45 0.53 1.71 16 22 C -0.11 -3.39 8.11 22.27 0.18 -3.21 16 23 C -0.13 -4.77 9.29 22.27 0.21 -4.57 16 24 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 25 H 0.31 13.31 9.06 -89.70 -0.81 12.50 16 26 H 0.32 14.63 7.34 -89.69 -0.66 13.97 16 27 H 0.11 4.16 8.04 -2.91 -0.02 4.13 16 28 H 0.14 3.22 7.98 -2.91 -0.02 3.19 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.47 7.24 -2.39 -0.02 1.45 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.07 1.49 6.65 -2.39 -0.02 1.48 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.13 3.40 7.31 -2.91 -0.02 3.38 16 36 H 0.11 4.15 6.66 -2.91 -0.02 4.13 16 Total: -1.00 -64.18 296.57 1.46 -62.72 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: -0.38 Total: 32.20 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 2.69 Total: -37.68 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -1.19 Total: -92.47 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.69 Total: -10.92 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -64.18 1.46 -62.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.563 kcal (2) G-P(sol) polarization free energy of solvation -64.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds