Wall clock time and date at job start Mon Mar 30 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00423 * 2 1 4 4 H 1.48500 * 109.47252 * 240.00322 * 3 2 1 5 5 H 1.48507 * 109.46747 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47409 * 119.99726 * 3 2 1 7 7 C 1.37880 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00131 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00060 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.52123 * 299.87544 * 9 7 2 11 11 C 1.53117 * 109.52144 * 59.99602 * 9 7 2 12 12 C 1.53042 * 109.27834 * 177.56277 * 11 9 7 13 13 N 1.46849 * 109.52046 * 300.82118 * 12 11 9 14 14 C 1.46851 * 111.19801 * 61.74184 * 13 12 11 15 15 H 1.09007 * 109.45886 * 58.26279 * 14 13 12 16 16 C 1.50701 * 109.46245 * 178.23712 * 14 13 12 17 17 C 1.38163 * 120.02776 * 25.32819 * 16 14 13 18 18 C 1.38241 * 120.05692 * 180.29514 * 17 16 14 19 19 C 1.38292 * 120.10853 * 359.67667 * 18 17 16 20 20 C 1.38119 * 120.05538 * 359.97438 * 19 18 17 21 21 C 1.38712 * 120.02731 * 204.99791 * 16 14 13 22 22 O 1.35896 * 120.05761 * 0.02562 * 21 16 14 23 23 C 1.53033 * 109.52486 * 298.25677 * 14 13 12 24 24 H 0.97005 * 119.99850 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.49983 * 57.62275 * 11 9 7 26 26 H 1.09000 * 109.54115 * 297.52464 * 11 9 7 27 27 H 1.09001 * 109.45963 * 180.80914 * 12 11 9 28 28 H 1.08992 * 109.46396 * 60.83677 * 12 11 9 29 29 H 1.00901 * 110.99922 * 185.83884 * 13 12 11 30 30 H 1.08004 * 119.97440 * 359.97438 * 17 16 14 31 31 H 1.08000 * 119.95005 * 179.69764 * 18 17 16 32 32 H 1.07997 * 119.97028 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.02777 * 179.97438 * 20 19 18 34 34 H 0.96700 * 114.00170 * 269.72567 * 22 21 16 35 35 H 1.09000 * 109.50340 * 179.11803 * 23 14 13 36 36 H 1.08998 * 109.50404 * 299.23717 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6254 -2.5586 0.8911 11 6 0.3707 -2.5818 -1.2495 12 6 -0.3452 -3.9342 -1.2750 13 7 0.6485 -5.0153 -1.2819 14 6 1.4747 -4.9849 -0.0683 15 1 0.8342 -5.0730 0.8094 16 6 2.4497 -6.1338 -0.0956 17 6 2.8407 -6.6802 -1.3029 18 6 3.7302 -7.7381 -1.3284 19 6 4.2361 -8.2477 -0.1466 20 6 3.8539 -7.7003 1.0625 21 6 2.9605 -6.6391 1.0909 22 8 2.5822 -6.0994 2.2793 23 6 2.2449 -3.6640 -0.0068 24 1 -0.4850 0.8401 0.0004 25 1 0.9922 -2.4822 -2.1395 26 1 -0.3672 -1.7798 -1.2294 27 1 -0.9618 -4.0019 -2.1713 28 1 -0.9770 -4.0273 -0.3918 29 1 0.2041 -5.9142 -1.3944 30 1 2.4470 -6.2839 -2.2273 31 1 4.0309 -8.1670 -2.2729 32 1 4.9313 -9.0739 -0.1691 33 1 4.2489 -8.0990 1.9853 34 1 3.1471 -5.3743 2.5796 35 1 2.8460 -3.6351 0.9020 36 1 2.8958 -3.5814 -0.8771 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260440034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:15 Heat of formation + Delta-G solvation = -47.470082 kcal Electronic energy + Delta-G solvation = -18053.755849 eV Core-core repulsion = 15308.298861 eV Total energy + Delta-G solvation = -2745.456988 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07441 -39.04330 -37.47786 -35.33967 -33.10452 -32.44348 -30.80453 -29.54253 -27.39152 -24.56440 -23.74873 -23.10821 -21.91541 -20.28946 -19.20707 -18.41333 -17.54735 -16.79755 -16.57790 -16.45396 -15.89235 -15.05246 -14.90512 -14.69112 -14.53826 -14.32811 -14.09057 -13.37892 -13.12291 -12.88253 -12.84544 -12.68538 -12.50918 -12.33768 -12.07668 -11.90347 -11.44789 -11.42117 -10.86335 -10.69280 -10.40095 -9.71311 -9.47365 -9.30669 -8.08591 -6.22765 0.36240 0.48025 1.41204 1.42459 1.50134 2.43081 2.77118 3.17690 3.23837 3.42625 3.84489 4.13943 4.23573 4.31346 4.37582 4.42869 4.57096 4.59947 4.72018 4.81122 4.89118 4.97765 5.03410 5.17324 5.20386 5.27674 5.49131 5.54142 5.59105 5.63967 5.65899 5.97783 6.00031 6.02123 6.25787 6.38028 6.59321 6.83396 6.88141 7.45036 8.95669 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.030624 B = 0.005966 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.109494 B = 4692.326184 C = 5029.871819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.046 3.954 10 H -0.014 1.014 11 C -0.098 4.098 12 C 0.068 3.932 13 N -0.674 5.674 14 C 0.141 3.859 15 H 0.026 0.974 16 C -0.118 4.118 17 C -0.093 4.093 18 C -0.132 4.132 19 C -0.106 4.106 20 C -0.154 4.154 21 C 0.090 3.910 22 O -0.513 6.513 23 C -0.077 4.077 24 H 0.261 0.739 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.011 0.989 29 H 0.344 0.656 30 H 0.135 0.865 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.402 0.598 35 H 0.046 0.954 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.423 -15.178 -1.322 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.028 3.972 10 H 0.004 0.996 11 C -0.136 4.136 12 C -0.061 4.061 13 N -0.306 5.306 14 C 0.031 3.969 15 H 0.044 0.956 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.150 4.150 19 C -0.124 4.124 20 C -0.172 4.172 21 C 0.045 3.955 22 O -0.325 6.325 23 C -0.115 4.115 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.030 0.970 29 H 0.162 0.838 30 H 0.153 0.847 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.260 0.740 35 H 0.065 0.935 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.266 -15.101 -1.715 16.439 hybrid contribution -0.231 1.386 0.961 1.702 sum 6.035 -13.715 -0.753 15.003 Atomic orbital electron populations 1.70010 1.07172 1.27175 1.51307 1.25734 0.95676 1.02332 0.94740 0.85685 0.78454 0.79147 0.78810 1.19677 1.20865 1.19683 1.21507 0.92908 0.92134 1.50703 0.93166 1.18643 0.93078 0.92412 0.93113 0.99605 1.21448 0.99216 0.94976 0.97982 1.21916 0.92801 0.91978 0.99432 1.60321 1.25398 1.06723 1.38143 1.20090 0.92969 0.93047 0.90768 0.95639 1.20286 1.00250 0.97498 0.93889 1.21160 0.96858 0.95814 0.97315 1.21517 0.97303 0.96480 0.99680 1.21384 0.99626 1.00110 0.91263 1.21587 0.98000 0.97479 1.00132 1.18594 0.96770 0.95736 0.84408 1.84715 1.57898 1.54552 1.35339 1.21429 0.97652 0.92765 0.99628 0.93026 0.95003 0.91915 0.89960 0.97033 0.83767 0.84693 0.83262 0.82709 0.83985 0.74032 0.93499 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.69 11.35 21.45 0.24 -53.45 16 2 C 0.01 0.77 5.30 84.66 0.45 1.22 16 3 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.53 -30.16 8.57 25.60 0.22 -29.94 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.39 2.17 -11.46 -0.02 2.36 16 10 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 11 C -0.10 -4.78 5.12 30.65 0.16 -4.63 16 12 C 0.07 2.66 6.55 86.33 0.57 3.23 16 13 N -0.67 -23.50 5.31 -495.55 -2.63 -26.14 16 14 C 0.14 5.24 2.36 44.19 0.10 5.34 16 15 H 0.03 1.05 7.69 -2.38 -0.02 1.04 16 16 C -0.12 -3.72 4.99 -19.77 -0.10 -3.82 16 17 C -0.09 -2.53 9.21 22.25 0.21 -2.32 16 18 C -0.13 -2.78 10.04 22.28 0.22 -2.56 16 19 C -0.11 -2.06 10.04 22.25 0.22 -1.84 16 20 C -0.15 -3.56 9.99 22.36 0.22 -3.33 16 21 C 0.09 2.61 6.68 22.51 0.15 2.77 16 22 O -0.51 -15.18 12.64 -92.38 -1.17 -16.35 16 23 C -0.08 -3.32 4.58 30.64 0.14 -3.18 16 24 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 25 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 3.43 6.15 -2.39 -0.01 3.42 16 27 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.34 10.18 8.64 -89.69 -0.78 9.40 16 30 H 0.14 3.69 7.27 -2.91 -0.02 3.67 16 31 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.40 9.30 9.06 -74.06 -0.67 8.63 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -64.78 293.66 0.65 -64.13 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.36 Total: 22.37 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 2.54 Total: -36.70 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -2.39 Total: -79.58 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.17 Total: -16.35 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -64.78 0.65 -64.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.663 kcal (2) G-P(sol) polarization free energy of solvation -64.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds