Wall clock time and date at job start Mon Mar 30 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48498 * 109.46733 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47197 * 299.99961 * 3 2 1 6 6 H 1.48495 * 109.47016 * 60.00113 * 3 2 1 7 7 C 1.37875 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00295 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.52169 * 299.87445 * 9 7 2 11 11 C 1.53120 * 109.52160 * 60.00257 * 9 7 2 12 12 C 1.53032 * 109.27759 * 62.31353 * 11 9 7 13 13 N 1.46851 * 109.52817 * 59.17748 * 12 11 9 14 14 C 1.46843 * 111.19818 * 298.26040 * 13 12 11 15 15 H 1.09001 * 109.45895 * 301.73263 * 14 13 12 16 16 C 1.50699 * 109.46616 * 181.75546 * 14 13 12 17 17 C 1.38165 * 120.02194 * 340.20759 * 16 14 13 18 18 C 1.38247 * 120.05172 * 180.24969 * 17 16 14 19 19 C 1.38289 * 120.11155 * 359.74987 * 18 17 16 20 20 C 1.38119 * 120.05481 * 0.02562 * 19 18 17 21 21 C 1.38701 * 120.02999 * 159.97626 * 16 14 13 22 22 O 1.35905 * 120.05928 * 0.02593 * 21 16 14 23 23 C 1.53044 * 109.51806 * 61.74026 * 14 13 12 24 24 H 0.97002 * 120.00254 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.50409 * 302.37388 * 11 9 7 26 26 H 1.08994 * 109.49889 * 182.25229 * 11 9 7 27 27 H 1.08998 * 109.46668 * 299.16086 * 12 11 9 28 28 H 1.08998 * 109.46527 * 179.19370 * 12 11 9 29 29 H 1.00898 * 111.00209 * 174.16003 * 13 12 11 30 30 H 1.07998 * 119.97726 * 0.02562 * 17 16 14 31 31 H 1.08001 * 119.94724 * 179.72298 * 18 17 16 32 32 H 1.08000 * 119.96757 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.02464 * 179.97438 * 20 19 18 34 34 H 0.96701 * 113.99759 * 269.72858 * 22 21 16 35 35 H 1.09000 * 109.49811 * 60.75902 * 23 14 13 36 36 H 1.09000 * 109.50572 * 180.87736 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6260 -2.5590 0.8905 11 6 0.3697 -2.5812 -1.2501 12 6 1.2572 -2.5581 -2.4966 13 7 2.1886 -3.6929 -2.4572 14 6 3.0770 -3.6103 -1.2909 15 1 3.6326 -2.6731 -1.3233 16 6 4.0424 -4.7673 -1.3121 17 6 3.7561 -5.8928 -2.0606 18 6 4.6389 -6.9567 -2.0764 19 6 5.8126 -6.8952 -1.3476 20 6 6.1054 -5.7704 -0.6015 21 6 5.2212 -4.7012 -0.5842 22 8 5.5070 -3.5935 0.1495 23 6 2.2437 -3.6649 -0.0084 24 1 -0.4850 0.8400 0.0004 25 1 -0.3107 -1.7301 -1.2720 26 1 -0.2051 -3.5071 -1.2297 27 1 1.8215 -1.6260 -2.5235 28 1 0.6338 -2.6309 -3.3877 29 1 2.7198 -3.7546 -3.3128 30 1 2.8404 -5.9431 -2.6308 31 1 4.4113 -7.8375 -2.6584 32 1 6.5003 -7.7278 -1.3613 33 1 7.0220 -5.7230 -0.0323 34 1 6.0037 -2.9190 -0.3338 35 1 1.6983 -4.6078 0.0312 36 1 2.9020 -3.5880 0.8569 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260440037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:18 Heat of formation + Delta-G solvation = -43.780572 kcal Electronic energy + Delta-G solvation = -18372.216252 eV Core-core repulsion = 15626.919253 eV Total energy + Delta-G solvation = -2745.296999 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06097 -39.11008 -37.45825 -35.12533 -32.98479 -32.42628 -30.77594 -29.47537 -27.20567 -24.71464 -23.92156 -23.03288 -21.85374 -20.41737 -19.19828 -17.76992 -17.65119 -16.75062 -16.59380 -16.31265 -15.96080 -15.07223 -14.87311 -14.67172 -14.56111 -14.00777 -13.99839 -13.36140 -13.21864 -12.94452 -12.85685 -12.67475 -12.47039 -12.38984 -12.06814 -11.76348 -11.39953 -11.15679 -10.87221 -10.71587 -10.38746 -9.68417 -9.44139 -9.17811 -8.06623 -6.17832 0.39777 0.49825 1.37037 1.39900 1.49866 2.42660 2.81491 3.20663 3.33380 3.42768 3.92670 4.17168 4.26868 4.38669 4.47430 4.52646 4.63850 4.68458 4.75369 4.90373 4.96260 5.03373 5.18819 5.21380 5.25608 5.38419 5.52591 5.58851 5.61578 5.65763 5.67538 5.84106 6.01909 6.06017 6.34728 6.41876 6.70364 6.89807 6.91233 7.48109 8.98613 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.007154 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.889352 B = 3913.134073 C = 4477.067131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.049 0.951 9 C 0.037 3.963 10 H -0.015 1.015 11 C -0.101 4.101 12 C 0.084 3.916 13 N -0.675 5.675 14 C 0.156 3.844 15 H 0.032 0.968 16 C -0.121 4.121 17 C -0.095 4.095 18 C -0.132 4.132 19 C -0.107 4.107 20 C -0.155 4.155 21 C 0.089 3.911 22 O -0.511 6.511 23 C -0.077 4.077 24 H 0.259 0.741 25 H 0.065 0.935 26 H 0.027 0.973 27 H 0.016 0.984 28 H 0.072 0.928 29 H 0.342 0.658 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.399 0.601 35 H 0.039 0.961 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.052 -11.163 -6.691 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.019 3.981 10 H 0.003 0.997 11 C -0.139 4.139 12 C -0.045 4.045 13 N -0.307 5.307 14 C 0.046 3.954 15 H 0.050 0.950 16 C -0.122 4.122 17 C -0.113 4.113 18 C -0.150 4.150 19 C -0.125 4.125 20 C -0.173 4.173 21 C 0.044 3.956 22 O -0.322 6.322 23 C -0.115 4.115 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.090 0.910 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.257 0.743 35 H 0.058 0.942 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.157 -11.734 -5.934 16.615 hybrid contribution 0.802 2.325 -0.138 2.463 sum 10.959 -9.409 -6.072 15.668 Atomic orbital electron populations 1.70014 1.07070 1.26804 1.51896 1.25655 0.95545 1.01951 0.95251 0.85687 0.79193 0.80382 0.77519 1.19260 1.20559 1.21006 1.21365 0.92526 0.91405 1.49381 0.93249 1.18737 0.93145 0.92888 0.93353 0.99680 1.21411 0.98129 0.98923 0.95460 1.21619 0.94362 0.90732 0.97819 1.60376 1.21107 1.44498 1.04711 1.19838 0.90650 0.93578 0.91303 0.95044 1.20432 0.95513 0.97642 0.98651 1.21188 1.00160 0.92008 0.97987 1.21518 0.94249 0.98957 1.00231 1.21370 0.97614 0.97744 0.95789 1.21580 1.00084 0.94275 1.01395 1.18626 0.93842 0.89134 0.93949 1.84839 1.78135 1.28865 1.40405 1.21367 0.97156 0.97438 0.95545 0.93172 0.91635 0.95448 0.96568 0.90996 0.83999 0.84398 0.83169 0.82763 0.84189 0.74341 0.94234 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.43 11.31 21.45 0.24 -53.19 16 2 C 0.01 0.78 5.30 84.65 0.45 1.23 16 3 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 7 C -0.51 -28.16 6.74 25.60 0.17 -27.99 16 8 H 0.05 2.74 6.88 -2.91 -0.02 2.72 16 9 C 0.04 1.97 2.60 -11.46 -0.03 1.94 16 10 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 11 C -0.10 -4.94 5.41 30.65 0.17 -4.77 16 12 C 0.08 3.47 6.34 86.32 0.55 4.02 16 13 N -0.68 -24.33 5.25 -495.56 -2.60 -26.93 16 14 C 0.16 6.08 2.09 44.19 0.09 6.18 16 15 H 0.03 1.37 6.50 -2.39 -0.02 1.36 16 16 C -0.12 -3.97 5.04 -19.77 -0.10 -4.07 16 17 C -0.10 -2.61 9.14 22.25 0.20 -2.41 16 18 C -0.13 -2.82 10.04 22.28 0.22 -2.59 16 19 C -0.11 -2.16 10.04 22.25 0.22 -1.94 16 20 C -0.15 -3.77 9.99 22.37 0.22 -3.55 16 21 C 0.09 2.75 6.67 22.50 0.15 2.90 16 22 O -0.51 -16.47 12.65 -92.48 -1.17 -17.64 16 23 C -0.08 -3.52 4.82 30.65 0.15 -3.38 16 24 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.07 3.58 6.02 -2.39 -0.01 3.57 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.02 0.74 7.31 -2.39 -0.02 0.72 16 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.34 10.37 8.48 -89.70 -0.76 9.61 16 30 H 0.14 3.71 7.10 -2.91 -0.02 3.69 16 31 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.40 9.54 9.06 -74.06 -0.67 8.87 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.85 8.05 -2.39 -0.02 1.83 16 Total: -1.00 -64.89 288.76 0.63 -64.26 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.34 Total: 21.98 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 2.47 Total: -34.44 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -2.36 Total: -80.12 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -1.17 Total: -17.64 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.89 0.63 -64.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.479 kcal (2) G-P(sol) polarization free energy of solvation -64.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds