Wall clock time and date at job start Mon Mar 30 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48494 * 109.47312 * 239.99992 * 3 2 1 5 5 H 1.48501 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47023 * 119.99791 * 3 2 1 7 7 C 1.37881 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99825 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99799 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.52300 * 60.13160 * 9 7 2 11 11 C 1.53120 * 109.52551 * 300.00195 * 9 7 2 12 12 C 1.53033 * 109.27837 * 182.37755 * 11 9 7 13 13 N 1.46848 * 109.52347 * 59.17872 * 12 11 9 14 14 C 1.46851 * 111.19675 * 298.25727 * 13 12 11 15 15 H 1.09002 * 109.46291 * 301.73445 * 14 13 12 16 16 C 1.50707 * 109.46055 * 181.76234 * 14 13 12 17 17 C 1.38163 * 120.02719 * 340.01682 * 16 14 13 18 18 C 1.38243 * 120.05442 * 179.97438 * 17 16 14 19 19 C 1.38289 * 120.11362 * 0.02562 * 18 17 16 20 20 C 1.38125 * 120.05159 * 359.97438 * 19 18 17 21 21 C 1.38708 * 120.02781 * 160.00074 * 16 14 13 22 22 O 1.35898 * 120.05505 * 0.04281 * 21 16 14 23 23 C 1.53029 * 109.52395 * 61.74432 * 14 13 12 24 24 H 0.96992 * 119.99831 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.50228 * 62.43124 * 11 9 7 26 26 H 1.08998 * 109.53365 * 302.33611 * 11 9 7 27 27 H 1.09006 * 109.46040 * 299.16182 * 12 11 9 28 28 H 1.08998 * 109.46462 * 179.19513 * 12 11 9 29 29 H 1.00900 * 111.00010 * 174.16297 * 13 12 11 30 30 H 1.08001 * 119.97035 * 359.97438 * 17 16 14 31 31 H 1.08004 * 119.94085 * 180.02562 * 18 17 16 32 32 H 1.07993 * 119.96940 * 180.27537 * 19 18 17 33 33 H 1.08000 * 120.02333 * 179.97438 * 20 19 18 34 34 H 0.96705 * 114.00232 * 269.97496 * 22 21 16 35 35 H 1.08996 * 109.50632 * 60.75816 * 23 14 13 36 36 H 1.09006 * 109.50434 * 180.88015 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6255 -2.5586 -0.8912 11 6 0.3707 -2.5818 1.2496 12 6 -0.3463 -3.9336 1.2741 13 7 0.6465 -5.0156 1.2803 14 6 1.4727 -4.9851 0.0666 15 1 0.8321 -5.0721 -0.8110 16 6 2.4466 -6.1349 0.0932 17 6 2.7526 -6.7543 1.2897 18 6 3.6455 -7.8094 1.3146 19 6 4.2350 -8.2472 0.1428 20 6 3.9324 -7.6313 -1.0559 21 6 3.0363 -6.5724 -1.0836 22 8 2.7374 -5.9644 -2.2617 23 6 2.2440 -3.6648 0.0060 24 1 -0.4849 0.8400 0.0004 25 1 -0.3664 -1.7792 1.2292 26 1 0.9918 -2.4831 2.1398 27 1 -0.9783 -4.0256 0.3908 28 1 -0.9629 -4.0014 2.1704 29 1 0.2014 -5.9142 1.3922 30 1 2.2938 -6.4139 2.2062 31 1 3.8830 -8.2925 2.2509 32 1 4.9289 -9.0745 0.1643 33 1 4.3934 -7.9734 -1.9707 34 1 1.9847 -6.3553 -2.7262 35 1 2.8950 -3.5833 0.8763 36 1 2.8451 -3.6359 -0.9029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260440042.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:22 Heat of formation + Delta-G solvation = -26.133468 kcal Electronic energy + Delta-G solvation = -18052.084528 eV Core-core repulsion = 15307.552765 eV Total energy + Delta-G solvation = -2744.531763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.90006 -37.48557 -36.40939 -33.41915 -31.66861 -30.54120 -29.72080 -28.13307 -25.38150 -23.15037 -22.46409 -21.48987 -20.49709 -18.56813 -18.11245 -16.60699 -15.92063 -15.55900 -15.26641 -14.85815 -14.45844 -13.69495 -13.50765 -13.29912 -12.78528 -12.52961 -12.33688 -12.10755 -11.88631 -11.57887 -11.30438 -10.89406 -10.78408 -10.52597 -10.29969 -10.18480 -9.96295 -9.41487 -9.07951 -8.69827 -8.62906 -8.35483 -8.24388 -7.82481 -5.93107 -3.97969 1.40438 1.51208 3.36528 3.40240 3.43979 3.80989 4.39486 4.49126 4.64945 5.02492 5.15628 5.18211 5.36986 5.53233 5.70424 5.85758 5.92965 6.03105 6.14754 6.20385 6.30250 6.45516 6.58519 6.63234 6.67916 6.74684 6.91700 7.00730 7.15826 7.19886 7.52541 7.62919 7.82276 7.84209 7.95303 8.10434 8.20206 8.53177 9.05185 9.65986 11.13054 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.030625 B = 0.005994 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.052039 B = 4670.191638 C = 5040.454955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.050 3.950 10 H 0.020 0.980 11 C -0.107 4.107 12 C 0.059 3.941 13 N -0.683 5.683 14 C 0.135 3.865 15 H 0.039 0.961 16 C -0.094 4.094 17 C -0.088 4.088 18 C -0.135 4.135 19 C -0.117 4.117 20 C -0.151 4.151 21 C 0.105 3.895 22 O -0.491 6.491 23 C -0.089 4.089 24 H 0.259 0.741 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.324 0.676 30 H 0.139 0.861 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.384 0.616 35 H 0.054 0.946 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 -15.580 0.317 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.031 3.969 10 H 0.038 0.962 11 C -0.145 4.145 12 C -0.069 4.069 13 N -0.314 5.314 14 C 0.025 3.975 15 H 0.056 0.944 16 C -0.095 4.095 17 C -0.106 4.106 18 C -0.153 4.153 19 C -0.135 4.135 20 C -0.169 4.169 21 C 0.061 3.939 22 O -0.300 6.300 23 C -0.126 4.126 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.239 0.761 35 H 0.072 0.928 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.201 -14.704 0.827 15.071 hybrid contribution -0.515 0.263 -0.836 1.016 sum 2.687 -14.441 -0.009 14.689 Atomic orbital electron populations 1.69862 1.05849 1.26354 1.51213 1.24951 0.94838 0.98949 0.95222 0.86691 0.79627 0.83273 0.78601 1.20352 1.21365 1.20323 1.21161 0.92872 0.90619 1.50012 0.92840 1.18677 0.92651 0.91610 0.93913 0.96209 1.21682 1.00196 0.93241 0.99384 1.22104 0.92784 0.93534 0.98505 1.60414 1.25979 1.06191 1.38828 1.20338 0.92594 0.93813 0.90752 0.94354 1.20477 0.98806 0.97253 0.92968 1.21104 0.96791 0.94543 0.98172 1.21181 0.98120 0.97981 0.98008 1.20941 1.00184 1.00033 0.92362 1.21322 1.00339 0.96449 0.98811 1.18348 0.97188 0.92866 0.85542 1.84903 1.53818 1.58543 1.32748 1.21656 0.98482 0.91879 1.00633 0.93093 0.88968 0.93872 0.96270 0.92461 0.85959 0.84313 0.86199 0.86248 0.85913 0.76082 0.92756 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 11.35 55.43 0.63 -25.14 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.39 8.57 -34.44 -0.30 -14.69 16 8 H 0.05 1.51 7.75 -52.48 -0.41 1.11 16 9 C 0.05 1.28 2.17 -91.65 -0.20 1.08 16 10 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 11 C -0.11 -2.56 5.12 -26.65 -0.14 -2.69 16 12 C 0.06 1.15 6.55 -3.84 -0.03 1.12 16 13 N -0.68 -11.87 5.25 -107.98 -0.57 -12.44 16 14 C 0.13 2.47 2.30 -68.87 -0.16 2.31 16 15 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 16 C -0.09 -1.51 5.03 -104.47 -0.53 -2.04 16 17 C -0.09 -1.27 9.14 -39.61 -0.36 -1.63 16 18 C -0.13 -1.66 10.04 -39.56 -0.40 -2.06 16 19 C -0.12 -1.38 10.04 -39.60 -0.40 -1.78 16 20 C -0.15 -1.95 9.99 -39.43 -0.39 -2.35 16 21 C 0.11 1.60 6.67 -39.22 -0.26 1.33 16 22 O -0.49 -7.29 12.65 -19.42 -0.25 -7.54 16 23 C -0.09 -1.98 4.58 -26.65 -0.12 -2.10 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 26 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.32 4.75 8.49 -39.29 -0.33 4.42 16 30 H 0.14 1.98 7.10 -52.49 -0.37 1.61 16 31 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.38 3.85 9.06 45.56 0.41 4.26 16 35 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.05 1.27 8.05 -51.93 -0.42 0.85 16 LS Contribution 293.27 15.07 4.42 4.42 Total: -1.00 -30.52 293.27 -8.52 -39.04 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.36 Total: 6.77 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -3.37 Total: -21.86 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.06 Total: -37.58 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.25 Total: -7.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.52 -8.52 -39.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440042.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.906 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds