Wall clock time and date at job start Mon Mar 30 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48494 * 109.47312 * 239.99992 * 3 2 1 5 5 H 1.48501 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47023 * 119.99791 * 3 2 1 7 7 C 1.37881 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99825 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99799 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.52300 * 60.13160 * 9 7 2 11 11 C 1.53120 * 109.52551 * 300.00195 * 9 7 2 12 12 C 1.53033 * 109.27837 * 182.37755 * 11 9 7 13 13 N 1.46848 * 109.52347 * 59.17872 * 12 11 9 14 14 C 1.46851 * 111.19675 * 298.25727 * 13 12 11 15 15 H 1.09002 * 109.46291 * 301.73445 * 14 13 12 16 16 C 1.50707 * 109.46055 * 181.76234 * 14 13 12 17 17 C 1.38163 * 120.02719 * 340.01682 * 16 14 13 18 18 C 1.38243 * 120.05442 * 179.97438 * 17 16 14 19 19 C 1.38289 * 120.11362 * 0.02562 * 18 17 16 20 20 C 1.38125 * 120.05159 * 359.97438 * 19 18 17 21 21 C 1.38708 * 120.02781 * 160.00074 * 16 14 13 22 22 O 1.35898 * 120.05505 * 0.04281 * 21 16 14 23 23 C 1.53029 * 109.52395 * 61.74432 * 14 13 12 24 24 H 0.96992 * 119.99831 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.50228 * 62.43124 * 11 9 7 26 26 H 1.08998 * 109.53365 * 302.33611 * 11 9 7 27 27 H 1.09006 * 109.46040 * 299.16182 * 12 11 9 28 28 H 1.08998 * 109.46462 * 179.19513 * 12 11 9 29 29 H 1.00900 * 111.00010 * 174.16297 * 13 12 11 30 30 H 1.08001 * 119.97035 * 359.97438 * 17 16 14 31 31 H 1.08004 * 119.94085 * 180.02562 * 18 17 16 32 32 H 1.07993 * 119.96940 * 180.27537 * 19 18 17 33 33 H 1.08000 * 120.02333 * 179.97438 * 20 19 18 34 34 H 0.96705 * 114.00232 * 269.97496 * 22 21 16 35 35 H 1.08996 * 109.50632 * 60.75816 * 23 14 13 36 36 H 1.09006 * 109.50434 * 180.88015 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6255 -2.5586 -0.8912 11 6 0.3707 -2.5818 1.2496 12 6 -0.3463 -3.9336 1.2741 13 7 0.6465 -5.0156 1.2803 14 6 1.4727 -4.9851 0.0666 15 1 0.8321 -5.0721 -0.8110 16 6 2.4466 -6.1349 0.0932 17 6 2.7526 -6.7543 1.2897 18 6 3.6455 -7.8094 1.3146 19 6 4.2350 -8.2472 0.1428 20 6 3.9324 -7.6313 -1.0559 21 6 3.0363 -6.5724 -1.0836 22 8 2.7374 -5.9644 -2.2617 23 6 2.2440 -3.6648 0.0060 24 1 -0.4849 0.8400 0.0004 25 1 -0.3664 -1.7792 1.2292 26 1 0.9918 -2.4831 2.1398 27 1 -0.9783 -4.0256 0.3908 28 1 -0.9629 -4.0014 2.1704 29 1 0.2014 -5.9142 1.3922 30 1 2.2938 -6.4139 2.2062 31 1 3.8830 -8.2925 2.2509 32 1 4.9289 -9.0745 0.1643 33 1 4.3934 -7.9734 -1.9707 34 1 1.9847 -6.3553 -2.7262 35 1 2.8950 -3.5833 0.8763 36 1 2.8451 -3.6359 -0.9029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260440042.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:21 Heat of formation + Delta-G solvation = -46.893174 kcal Electronic energy + Delta-G solvation = -18052.984736 eV Core-core repulsion = 15307.552765 eV Total energy + Delta-G solvation = -2745.431971 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07601 -39.05277 -37.48562 -35.35514 -33.10030 -32.45534 -30.80923 -29.52449 -27.40414 -24.57751 -23.82132 -23.00398 -21.90461 -20.32264 -19.25954 -18.43297 -17.53043 -16.72814 -16.64346 -16.38354 -15.97263 -15.04469 -14.89516 -14.65416 -14.53368 -14.35083 -14.06855 -13.40367 -13.10706 -12.88279 -12.86117 -12.67852 -12.47284 -12.37145 -12.07441 -11.91796 -11.45036 -11.41653 -10.86641 -10.68511 -10.40714 -9.70860 -9.48063 -9.29292 -8.09859 -6.23624 0.37441 0.47703 1.39307 1.40996 1.48800 2.42224 2.79639 3.16019 3.23584 3.39043 3.84856 4.14637 4.21588 4.30792 4.36575 4.43252 4.59200 4.61316 4.73616 4.81973 4.91371 4.98497 5.03588 5.17876 5.19508 5.27954 5.49101 5.54726 5.58864 5.64597 5.65160 5.98790 5.99437 6.03406 6.26594 6.38478 6.63051 6.86384 6.88866 7.43679 8.94363 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.030625 B = 0.005994 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.052039 B = 4670.191638 C = 5040.454955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.044 0.956 9 C 0.047 3.953 10 H -0.013 1.013 11 C -0.098 4.098 12 C 0.069 3.931 13 N -0.676 5.676 14 C 0.146 3.854 15 H 0.031 0.969 16 C -0.120 4.120 17 C -0.095 4.095 18 C -0.132 4.132 19 C -0.107 4.107 20 C -0.155 4.155 21 C 0.091 3.909 22 O -0.511 6.511 23 C -0.075 4.075 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.029 0.971 27 H 0.016 0.984 28 H 0.084 0.916 29 H 0.347 0.653 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.401 0.599 35 H 0.039 0.961 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 -17.445 1.004 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.062 0.938 9 C 0.029 3.971 10 H 0.005 0.995 11 C -0.136 4.136 12 C -0.060 4.060 13 N -0.308 5.308 14 C 0.036 3.964 15 H 0.048 0.952 16 C -0.121 4.121 17 C -0.113 4.113 18 C -0.150 4.150 19 C -0.124 4.124 20 C -0.173 4.173 21 C 0.046 3.954 22 O -0.323 6.323 23 C -0.113 4.113 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.102 0.898 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.259 0.741 35 H 0.058 0.942 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.174 -16.598 1.511 17.181 hybrid contribution -0.789 0.794 -1.078 1.554 sum 3.385 -15.804 0.433 16.168 Atomic orbital electron populations 1.69990 1.07018 1.27219 1.51239 1.25708 0.95744 1.02214 0.94655 0.85696 0.78530 0.79204 0.78742 1.19915 1.20417 1.19713 1.21504 0.92739 0.92448 1.50878 0.93785 1.18638 0.93022 0.92208 0.93247 0.99485 1.21445 0.99151 0.95360 0.97692 1.21904 0.92718 0.91691 0.99676 1.60278 1.25471 1.06835 1.38248 1.20020 0.92784 0.92766 0.90790 0.95168 1.20308 0.99819 0.97551 0.94411 1.21184 0.97544 0.95278 0.97314 1.21518 0.96886 0.96975 0.99630 1.21384 0.99538 1.00082 0.91438 1.21588 0.99616 0.95717 1.00371 1.18587 0.97922 0.93690 0.85180 1.84847 1.54909 1.59513 1.33036 1.21400 0.97620 0.93305 0.98992 0.92925 0.91781 0.95239 0.96596 0.89797 0.83412 0.84477 0.83236 0.82751 0.84037 0.74101 0.94176 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.15 11.35 21.45 0.24 -53.91 16 2 C 0.02 0.89 5.30 84.66 0.45 1.34 16 3 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.54 -31.62 8.57 25.60 0.22 -31.40 16 8 H 0.04 2.59 7.75 -2.91 -0.02 2.57 16 9 C 0.05 2.54 2.17 -11.46 -0.02 2.51 16 10 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 11 C -0.10 -4.84 5.12 30.65 0.16 -4.69 16 12 C 0.07 2.66 6.55 86.32 0.57 3.22 16 13 N -0.68 -22.97 5.25 -495.55 -2.60 -25.58 16 14 C 0.15 5.41 2.30 44.19 0.10 5.52 16 15 H 0.03 1.16 7.86 -2.39 -0.02 1.15 16 16 C -0.12 -3.77 5.03 -19.77 -0.10 -3.87 16 17 C -0.10 -2.56 9.14 22.25 0.20 -2.36 16 18 C -0.13 -2.79 10.04 22.28 0.22 -2.56 16 19 C -0.11 -2.09 10.04 22.25 0.22 -1.87 16 20 C -0.15 -3.60 9.99 22.36 0.22 -3.38 16 21 C 0.09 2.66 6.67 22.50 0.15 2.81 16 22 O -0.51 -15.18 12.65 -92.40 -1.17 -16.35 16 23 C -0.08 -3.49 4.58 30.64 0.14 -3.35 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.06 3.52 6.15 -2.39 -0.01 3.50 16 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.35 9.52 8.49 -89.69 -0.76 8.76 16 30 H 0.14 3.66 7.10 -2.91 -0.02 3.64 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.40 8.04 9.06 -74.05 -0.67 7.37 16 35 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.04 1.85 8.05 -2.38 -0.02 1.83 16 Total: -1.00 -67.76 293.27 0.68 -67.07 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.35 Total: 19.53 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 2.53 Total: -38.07 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -2.36 Total: -79.49 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.17 Total: -16.35 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.76 0.68 -67.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440042.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.180 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds