Wall clock time and date at job start Mon Mar 30 2020 06:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00038 * 2 1 4 4 H 1.48494 * 109.47150 * 239.99766 * 3 2 1 5 5 H 1.48494 * 109.47304 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46839 * 120.00007 * 3 2 1 7 7 C 1.37878 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99773 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.57437 * 60.15786 * 9 7 2 11 11 C 1.53126 * 109.52204 * 299.99977 * 9 7 2 12 12 C 1.53037 * 109.27801 * 297.75540 * 11 9 7 13 13 N 1.46854 * 109.51886 * 300.81620 * 12 11 9 14 14 C 1.46844 * 111.19703 * 61.74789 * 13 12 11 15 15 H 1.09002 * 109.46133 * 58.27161 * 14 13 12 16 16 C 1.50703 * 109.45988 * 178.23997 * 14 13 12 17 17 C 1.38163 * 120.03212 * 24.72360 * 16 14 13 18 18 C 1.38240 * 120.05964 * 179.79310 * 17 16 14 19 19 C 1.38291 * 120.10700 * 0.46396 * 18 17 16 20 20 C 1.38127 * 120.05934 * 359.78693 * 19 18 17 21 21 C 1.38718 * 120.02256 * 204.99961 * 16 14 13 22 22 O 1.35900 * 120.05872 * 359.95411 * 21 16 14 23 23 C 1.53035 * 109.52494 * 298.25280 * 14 13 12 24 24 H 0.97004 * 119.99867 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.49775 * 57.69458 * 11 9 7 26 26 H 1.08992 * 109.50023 * 177.81157 * 11 9 7 27 27 H 1.08994 * 109.46593 * 60.83220 * 12 11 9 28 28 H 1.09004 * 109.46132 * 180.80891 * 12 11 9 29 29 H 1.00903 * 110.99384 * 185.83968 * 13 12 11 30 30 H 1.08004 * 119.96977 * 0.02562 * 17 16 14 31 31 H 1.07998 * 119.94834 * 180.20946 * 18 17 16 32 32 H 1.08000 * 119.96960 * 179.77346 * 19 18 17 33 33 H 1.07993 * 120.02544 * 180.02562 * 20 19 18 34 34 H 0.96695 * 113.99629 * 90.00198 * 22 21 16 35 35 H 1.08999 * 109.50365 * 299.24296 * 23 14 13 36 36 H 1.08993 * 109.50781 * 179.11969 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6255 -2.5597 -0.8911 11 6 0.3707 -2.5817 1.2497 12 6 1.2590 -2.5575 2.4956 13 7 2.1912 -3.6915 2.4557 14 6 3.0788 -3.6083 1.2889 15 1 3.6338 -2.6707 1.3208 16 6 4.0452 -4.7645 1.3098 17 6 3.7152 -5.9296 1.9750 18 6 4.5994 -6.9922 1.9909 19 6 5.8201 -6.8884 1.3495 20 6 6.1570 -5.7239 0.6874 21 6 5.2693 -4.6578 0.6659 22 8 5.5982 -3.5112 0.0148 23 6 2.2450 -3.6639 0.0069 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3106 -1.7311 1.2718 26 1 -0.2033 -3.5080 1.2299 27 1 1.8225 -1.6248 2.5218 28 1 0.6361 -2.6306 3.3872 29 1 2.7231 -3.7525 3.3110 30 1 2.7639 -6.0117 2.4799 31 1 4.3381 -7.9033 2.5086 32 1 6.5107 -7.7186 1.3664 33 1 7.1103 -5.6437 0.1863 34 1 6.0555 -2.8626 0.5673 35 1 1.7003 -4.6073 -0.0323 36 1 2.9027 -3.5865 -0.8588 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260440046.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:25 Heat of formation + Delta-G solvation = -24.429019 kcal Electronic energy + Delta-G solvation = -18365.154564 eV Core-core repulsion = 15620.696712 eV Total energy + Delta-G solvation = -2744.457852 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81749 -37.49053 -36.32271 -33.23906 -31.48991 -30.52588 -29.65102 -28.03867 -25.13957 -23.26670 -22.41326 -21.64170 -20.45682 -18.53936 -18.01829 -16.28816 -15.70371 -15.49578 -15.18805 -14.71868 -14.51928 -13.62561 -13.33958 -13.28934 -12.80250 -12.34166 -12.26527 -11.98379 -11.80513 -11.49448 -11.21750 -11.03598 -10.90022 -10.58495 -10.30151 -10.08999 -9.81260 -9.30026 -8.99411 -8.78549 -8.58754 -8.35190 -8.20705 -7.57060 -5.95183 -3.99859 1.47217 1.57692 3.30463 3.36259 3.38507 3.87666 4.44919 4.49706 4.82091 5.09926 5.24709 5.25862 5.35341 5.61497 5.79572 6.01461 6.07644 6.16645 6.28984 6.40555 6.50269 6.52207 6.65657 6.73139 6.79403 6.82729 7.04006 7.06147 7.13249 7.28088 7.55829 7.68309 7.77687 7.93110 7.97283 8.19009 8.22798 8.51455 9.02984 9.63200 11.10534 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.007164 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.851754 B = 3907.294991 C = 4482.265001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.504 4.504 8 H 0.054 0.946 9 C 0.043 3.957 10 H 0.026 0.974 11 C -0.106 4.106 12 C 0.074 3.926 13 N -0.687 5.687 14 C 0.142 3.858 15 H 0.056 0.944 16 C -0.095 4.095 17 C -0.088 4.088 18 C -0.137 4.137 19 C -0.118 4.118 20 C -0.152 4.152 21 C 0.106 3.894 22 O -0.490 6.490 23 C -0.087 4.087 24 H 0.259 0.741 25 H 0.093 0.907 26 H 0.022 0.978 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.322 0.678 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.385 0.615 35 H 0.039 0.961 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.033 -9.656 5.438 14.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.713 3.287 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.025 3.975 10 H 0.044 0.956 11 C -0.145 4.145 12 C -0.055 4.055 13 N -0.318 5.318 14 C 0.033 3.967 15 H 0.073 0.927 16 C -0.096 4.096 17 C -0.106 4.106 18 C -0.155 4.155 19 C -0.137 4.137 20 C -0.171 4.171 21 C 0.061 3.939 22 O -0.300 6.300 23 C -0.125 4.125 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.241 0.759 35 H 0.058 0.942 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.143 -10.192 4.629 13.843 hybrid contribution 1.382 1.905 0.623 2.434 sum 9.524 -8.288 5.252 13.674 Atomic orbital electron populations 1.69858 1.05790 1.26283 1.51061 1.24943 0.94771 0.98761 0.95478 0.86773 0.79688 0.83728 0.78465 1.20331 1.21375 1.20600 1.21153 0.92706 0.90541 1.49808 0.92807 1.18734 0.92709 0.91794 0.94276 0.95613 1.21573 0.98262 1.00014 0.94613 1.21820 0.94298 0.90868 0.98478 1.60466 1.21126 1.46250 1.03921 1.20187 0.90903 0.92985 0.92627 0.92655 1.20633 0.94876 0.97475 0.96662 1.21101 0.99794 0.91647 0.98066 1.21169 0.94514 0.98913 1.00889 1.20921 0.97082 0.97225 0.98426 1.21325 0.99784 0.94344 1.01623 1.18389 0.92811 0.87681 0.95022 1.84888 1.79695 1.26559 1.38825 1.21556 0.97823 0.99085 0.94066 0.93083 0.88863 0.95894 0.94303 0.93505 0.86215 0.84447 0.86327 0.86364 0.86020 0.75935 0.94184 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 11.31 55.43 0.63 -24.58 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.50 -13.54 6.74 -34.44 -0.23 -13.77 16 8 H 0.05 1.45 6.88 -52.49 -0.36 1.09 16 9 C 0.04 1.09 2.61 -91.64 -0.24 0.86 16 10 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 11 C -0.11 -2.53 5.41 -26.65 -0.14 -2.67 16 12 C 0.07 1.54 6.34 -3.83 -0.02 1.51 16 13 N -0.69 -12.66 5.30 -107.98 -0.57 -13.24 16 14 C 0.14 2.76 2.15 -68.88 -0.15 2.61 16 15 H 0.06 1.18 6.34 -51.93 -0.33 0.85 16 16 C -0.10 -1.61 4.99 -104.47 -0.52 -2.13 16 17 C -0.09 -1.31 9.20 -39.61 -0.36 -1.68 16 18 C -0.14 -1.74 10.04 -39.56 -0.40 -2.13 16 19 C -0.12 -1.45 10.04 -39.60 -0.40 -1.85 16 20 C -0.15 -2.06 9.99 -39.43 -0.39 -2.46 16 21 C 0.11 1.69 6.68 -39.21 -0.26 1.43 16 22 O -0.49 -7.87 12.64 -19.43 -0.25 -8.11 16 23 C -0.09 -1.94 4.82 -26.65 -0.13 -2.07 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.09 2.46 6.02 -51.93 -0.31 2.15 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.89 7.31 -51.93 -0.38 0.51 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.32 5.19 8.63 -39.29 -0.34 4.85 16 30 H 0.14 2.03 7.25 -52.48 -0.38 1.65 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.39 4.51 9.06 45.56 0.41 4.93 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 289.11 15.07 4.36 4.36 Total: -1.00 -29.40 289.11 -8.41 -37.81 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.21 Total: 8.39 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -3.35 Total: -20.77 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.05 Total: -37.81 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.25 Total: -8.11 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.40 -8.41 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440046.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.378 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds