Wall clock time and date at job start Mon Mar 30 2020 06:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00038 * 2 1 4 4 H 1.48494 * 109.47150 * 239.99766 * 3 2 1 5 5 H 1.48494 * 109.47304 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46839 * 120.00007 * 3 2 1 7 7 C 1.37878 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99773 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.57437 * 60.15786 * 9 7 2 11 11 C 1.53126 * 109.52204 * 299.99977 * 9 7 2 12 12 C 1.53037 * 109.27801 * 297.75540 * 11 9 7 13 13 N 1.46854 * 109.51886 * 300.81620 * 12 11 9 14 14 C 1.46844 * 111.19703 * 61.74789 * 13 12 11 15 15 H 1.09002 * 109.46133 * 58.27161 * 14 13 12 16 16 C 1.50703 * 109.45988 * 178.23997 * 14 13 12 17 17 C 1.38163 * 120.03212 * 24.72360 * 16 14 13 18 18 C 1.38240 * 120.05964 * 179.79310 * 17 16 14 19 19 C 1.38291 * 120.10700 * 0.46396 * 18 17 16 20 20 C 1.38127 * 120.05934 * 359.78693 * 19 18 17 21 21 C 1.38718 * 120.02256 * 204.99961 * 16 14 13 22 22 O 1.35900 * 120.05872 * 359.95411 * 21 16 14 23 23 C 1.53035 * 109.52494 * 298.25280 * 14 13 12 24 24 H 0.97004 * 119.99867 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.49775 * 57.69458 * 11 9 7 26 26 H 1.08992 * 109.50023 * 177.81157 * 11 9 7 27 27 H 1.08994 * 109.46593 * 60.83220 * 12 11 9 28 28 H 1.09004 * 109.46132 * 180.80891 * 12 11 9 29 29 H 1.00903 * 110.99384 * 185.83968 * 13 12 11 30 30 H 1.08004 * 119.96977 * 0.02562 * 17 16 14 31 31 H 1.07998 * 119.94834 * 180.20946 * 18 17 16 32 32 H 1.08000 * 119.96960 * 179.77346 * 19 18 17 33 33 H 1.07993 * 120.02544 * 180.02562 * 20 19 18 34 34 H 0.96695 * 113.99629 * 90.00198 * 22 21 16 35 35 H 1.08999 * 109.50365 * 299.24296 * 23 14 13 36 36 H 1.08993 * 109.50781 * 179.11969 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6255 -2.5597 -0.8911 11 6 0.3707 -2.5817 1.2497 12 6 1.2590 -2.5575 2.4956 13 7 2.1912 -3.6915 2.4557 14 6 3.0788 -3.6083 1.2889 15 1 3.6338 -2.6707 1.3208 16 6 4.0452 -4.7645 1.3098 17 6 3.7152 -5.9296 1.9750 18 6 4.5994 -6.9922 1.9909 19 6 5.8201 -6.8884 1.3495 20 6 6.1570 -5.7239 0.6874 21 6 5.2693 -4.6578 0.6659 22 8 5.5982 -3.5112 0.0148 23 6 2.2450 -3.6639 0.0069 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3106 -1.7311 1.2718 26 1 -0.2033 -3.5080 1.2299 27 1 1.8225 -1.6248 2.5218 28 1 0.6361 -2.6306 3.3872 29 1 2.7231 -3.7525 3.3110 30 1 2.7639 -6.0117 2.4799 31 1 4.3381 -7.9033 2.5086 32 1 6.5107 -7.7186 1.3664 33 1 7.1103 -5.6437 0.1863 34 1 6.0555 -2.8626 0.5673 35 1 1.7003 -4.6073 -0.0323 36 1 2.9027 -3.5865 -0.8588 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260440046.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:24 Heat of formation + Delta-G solvation = -44.169824 kcal Electronic energy + Delta-G solvation = -18366.010590 eV Core-core repulsion = 15620.696712 eV Total energy + Delta-G solvation = -2745.313878 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05775 -39.11558 -37.46252 -35.11918 -32.98723 -32.42090 -30.77978 -29.48044 -27.19756 -24.70928 -23.88952 -23.08765 -21.85488 -20.40844 -19.19894 -17.76145 -17.64844 -16.76885 -16.59978 -16.31734 -15.94724 -15.05940 -14.87279 -14.66186 -14.56570 -14.02883 -13.99420 -13.35048 -13.22023 -12.94765 -12.81588 -12.68096 -12.49882 -12.44272 -12.05443 -11.75703 -11.40470 -11.15248 -10.88475 -10.72465 -10.38205 -9.68518 -9.43371 -9.18748 -8.06381 -6.17722 0.39386 0.49684 1.38608 1.40285 1.47346 2.42714 2.81311 3.20671 3.33732 3.42269 3.92580 4.17295 4.26838 4.38487 4.47394 4.52851 4.63661 4.68250 4.74950 4.89791 4.95813 5.03547 5.18698 5.21146 5.25072 5.38522 5.52348 5.58395 5.61583 5.65657 5.67833 5.83829 6.01775 6.05873 6.34611 6.41810 6.70337 6.89446 6.90836 7.48057 8.98410 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.007164 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.851754 B = 3907.294991 C = 4482.265001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.049 0.951 9 C 0.038 3.962 10 H -0.015 1.015 11 C -0.101 4.101 12 C 0.084 3.916 13 N -0.675 5.675 14 C 0.155 3.845 15 H 0.032 0.968 16 C -0.121 4.121 17 C -0.093 4.093 18 C -0.132 4.132 19 C -0.107 4.107 20 C -0.155 4.155 21 C 0.089 3.911 22 O -0.511 6.511 23 C -0.078 4.078 24 H 0.259 0.741 25 H 0.065 0.935 26 H 0.027 0.973 27 H 0.015 0.985 28 H 0.072 0.928 29 H 0.342 0.658 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.399 0.601 35 H 0.041 0.959 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.910 -11.236 6.760 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.020 3.980 10 H 0.004 0.996 11 C -0.139 4.139 12 C -0.045 4.045 13 N -0.306 5.306 14 C 0.046 3.954 15 H 0.050 0.950 16 C -0.122 4.122 17 C -0.112 4.112 18 C -0.150 4.150 19 C -0.125 4.125 20 C -0.173 4.173 21 C 0.044 3.956 22 O -0.323 6.323 23 C -0.116 4.116 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.158 0.842 34 H 0.257 0.743 35 H 0.060 0.940 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.039 -11.780 5.969 16.588 hybrid contribution 0.818 2.310 0.179 2.457 sum 10.857 -9.470 6.148 15.664 Atomic orbital electron populations 1.70000 1.07043 1.26945 1.51691 1.25647 0.95546 1.01909 0.95206 0.85801 0.78532 0.79802 0.78655 1.20141 1.21012 1.19626 1.21312 0.92505 0.91469 1.49692 0.93313 1.18727 0.93117 0.92826 0.93380 0.99645 1.21412 0.98113 0.98948 0.95420 1.21620 0.94349 0.90725 0.97832 1.60375 1.21047 1.44518 1.04668 1.19847 0.90656 0.93636 0.91284 0.95015 1.20425 0.95062 0.97352 0.99400 1.21169 1.00383 0.91717 0.97896 1.21516 0.94020 0.99130 1.00309 1.21373 0.97266 0.97442 0.96379 1.21579 1.00093 0.93998 1.01654 1.18637 0.93222 0.88319 0.95388 1.84836 1.80099 1.27411 1.39945 1.21371 0.97144 0.97575 0.95476 0.93143 0.91631 0.95386 0.96640 0.90999 0.84054 0.84552 0.83186 0.82746 0.84169 0.74309 0.94038 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.38 11.31 21.45 0.24 -53.14 16 2 C 0.02 0.84 5.30 84.65 0.45 1.29 16 3 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.51 -28.40 6.74 25.60 0.17 -28.22 16 8 H 0.05 2.70 6.88 -2.91 -0.02 2.68 16 9 C 0.04 2.00 2.61 -11.46 -0.03 1.97 16 10 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 11 C -0.10 -4.91 5.41 30.65 0.17 -4.75 16 12 C 0.08 3.48 6.34 86.32 0.55 4.03 16 13 N -0.67 -24.32 5.30 -495.55 -2.63 -26.95 16 14 C 0.16 6.06 2.15 44.19 0.10 6.16 16 15 H 0.03 1.39 6.34 -2.39 -0.02 1.37 16 16 C -0.12 -3.97 4.99 -19.77 -0.10 -4.07 16 17 C -0.09 -2.57 9.20 22.25 0.20 -2.37 16 18 C -0.13 -2.83 10.04 22.28 0.22 -2.60 16 19 C -0.11 -2.15 10.04 22.26 0.22 -1.92 16 20 C -0.15 -3.76 9.99 22.37 0.22 -3.53 16 21 C 0.09 2.74 6.68 22.51 0.15 2.89 16 22 O -0.51 -16.39 12.64 -92.43 -1.17 -17.56 16 23 C -0.08 -3.55 4.82 30.65 0.15 -3.40 16 24 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 25 H 0.07 3.58 6.02 -2.39 -0.01 3.56 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 27 H 0.02 0.71 7.31 -2.39 -0.02 0.69 16 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.34 10.42 8.63 -89.69 -0.77 9.64 16 30 H 0.14 3.72 7.25 -2.91 -0.02 3.70 16 31 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.40 9.40 9.06 -74.06 -0.67 8.73 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -64.83 289.11 0.60 -64.23 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.35 Total: 21.91 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 2.47 Total: -34.53 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -2.39 Total: -80.08 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.17 Total: -17.56 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -64.83 0.60 -64.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440046.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.063 kcal (2) G-P(sol) polarization free energy of solvation -64.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds