Wall clock time and date at job start Mon Mar 30 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29914 * 126.29710 * 2 1 4 4 O 1.41434 * 109.69029 * 180.02562 * 3 2 1 5 5 C 1.34379 * 109.30373 * 359.97438 * 4 3 2 6 6 C 1.39334 * 134.56534 * 180.02562 * 5 4 3 7 7 C 1.36678 * 119.19048 * 179.97438 * 6 5 4 8 8 N 1.32283 * 121.71330 * 359.97438 * 7 6 5 9 9 C 1.32362 * 122.08298 * 0.02562 * 8 7 6 10 10 N 1.38496 * 120.08500 * 179.97438 * 9 8 7 11 11 C 1.46504 * 119.99883 * 0.02562 * 10 9 8 12 12 C 1.52997 * 109.47281 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47158 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00107 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99986 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99858 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99844 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47254 * 89.99959 * 17 15 13 19 19 H 1.48499 * 109.46890 * 210.00333 * 17 15 13 20 20 H 1.48503 * 109.47163 * 329.99737 * 17 15 13 21 21 C 1.40329 * 119.83246 * 359.97438 * 9 8 7 22 22 H 1.09000 * 109.47162 * 89.98049 * 1 2 3 23 23 H 1.08994 * 109.47505 * 209.97784 * 1 2 3 24 24 H 1.09003 * 109.47744 * 329.98061 * 1 2 3 25 25 H 1.07996 * 120.40543 * 359.95440 * 6 5 4 26 26 H 1.08006 * 119.14645 * 179.97438 * 7 6 5 27 27 H 0.96997 * 120.00579 * 180.02562 * 10 9 8 28 28 H 1.09004 * 109.47001 * 299.99999 * 11 10 9 29 29 H 1.09001 * 109.47068 * 59.99876 * 11 10 9 30 30 H 1.09004 * 109.46951 * 299.99845 * 12 11 10 31 31 H 1.08993 * 109.47474 * 59.99563 * 12 11 10 32 32 H 0.97004 * 119.99544 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0471 0.0000 4 8 3.6314 0.6428 -0.0006 5 6 3.6946 -0.6995 -0.0004 6 6 4.7322 -1.6294 -0.0003 7 6 4.4322 -2.9629 0.0004 8 7 3.1817 -3.3943 0.0016 9 6 2.1514 -2.5635 0.0015 10 7 0.8587 -3.0605 0.0022 11 6 0.6304 -4.5077 0.0035 12 6 -0.8740 -4.7867 0.0034 13 6 -1.1088 -6.2753 0.0054 14 1 -0.2691 -6.9544 0.0062 15 6 -2.3957 -6.7702 0.0062 16 7 -2.6006 -8.0692 0.0074 17 14 -3.8481 -5.5955 0.0055 18 1 -4.2333 -5.2854 -1.3947 19 1 -4.9952 -6.2263 0.7065 20 1 -3.4703 -4.3408 0.7044 21 6 2.3721 -1.1776 0.0008 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3634 -0.8901 0.5134 24 1 -0.3635 0.8898 0.5141 25 1 5.7609 -1.3006 -0.0011 26 1 5.2371 -3.6831 0.0001 27 1 0.1045 -2.4506 0.0018 28 1 1.0811 -4.9474 -0.8862 29 1 1.0815 -4.9459 0.8938 30 1 -1.3251 -4.3469 0.8929 31 1 -1.3247 -4.3485 -0.8870 32 1 -3.5060 -8.4174 0.0076 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260457270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:46 Heat of formation + Delta-G solvation = 69.382026 kcal Electronic energy + Delta-G solvation = -17098.299827 eV Core-core repulsion = 14254.369583 eV Total energy + Delta-G solvation = -2843.930244 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.97910 -39.04017 -36.30057 -34.58929 -33.06957 -31.30546 -30.98931 -29.15988 -28.60314 -25.02755 -23.76299 -22.64498 -20.85602 -20.52224 -18.03762 -17.63767 -16.98090 -16.26180 -16.13714 -15.62141 -14.60970 -14.40941 -14.18668 -13.80986 -13.70259 -13.43860 -13.26865 -13.16776 -12.67769 -12.05209 -11.62373 -11.54248 -11.45839 -10.99117 -10.58615 -10.20837 -10.04880 -9.70888 -9.58128 -9.45696 -9.39228 -8.68112 -7.68297 -6.17340 -4.17959 0.64866 1.36599 1.92609 2.39782 3.19843 3.25353 3.27196 3.28772 3.78432 3.91138 4.06436 4.31583 4.51935 4.65083 5.00584 5.10389 5.13195 5.15488 5.20083 5.39531 5.58392 5.82203 5.90583 5.98341 6.11565 6.26507 6.46076 6.87915 7.09496 7.12794 7.19563 7.43297 7.60234 8.21040 8.37987 8.86697 9.42505 10.95571 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032040 B = 0.005330 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.694348 B = 5252.412866 C = 6100.359552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.157 3.843 3 N -0.309 5.309 4 O -0.096 6.096 5 C 0.165 3.835 6 C -0.261 4.261 7 C 0.207 3.793 8 N -0.558 5.558 9 C 0.490 3.510 10 N -0.699 5.699 11 C 0.135 3.865 12 C -0.025 4.025 13 C -0.523 4.523 14 H 0.077 0.923 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.267 1.267 21 C -0.325 4.325 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.142 0.858 26 H 0.170 0.830 27 H 0.404 0.596 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.017 0.983 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.003 14.327 -0.049 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.023 4.023 3 N -0.058 5.058 4 O -0.100 6.100 5 C 0.103 3.897 6 C -0.286 4.286 7 C 0.051 3.949 8 N -0.281 5.281 9 C 0.245 3.755 10 N -0.327 5.327 11 C 0.013 3.987 12 C -0.062 4.062 13 C -0.561 4.561 14 H 0.095 0.905 15 C -0.132 4.132 16 N -0.535 5.535 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.337 4.337 22 H 0.118 0.882 23 H 0.106 0.894 24 H 0.111 0.889 25 H 0.160 0.840 26 H 0.187 0.813 27 H 0.242 0.758 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.797 14.434 -0.043 16.904 hybrid contribution -0.950 0.823 -0.014 1.257 sum 7.847 15.257 -0.057 17.157 Atomic orbital electron populations 1.20583 0.84833 1.04892 1.04903 1.24306 0.97749 0.89490 0.90746 1.79969 0.84561 1.17545 1.23694 1.89042 1.23414 1.17131 1.80450 1.20222 0.94489 0.84858 0.90095 1.20440 0.98143 0.91420 1.18640 1.22176 0.92846 0.92832 0.87086 1.67526 0.98628 1.36955 1.24961 1.17996 0.87311 0.85138 0.85073 1.45434 1.02666 1.10035 1.74591 1.21637 0.98998 0.75969 1.02140 1.19829 0.90635 0.98976 0.96809 1.20861 0.94100 0.89244 1.51909 0.90484 1.24987 0.98858 0.95004 0.94316 1.69893 1.21642 1.11759 1.50168 0.86780 0.82400 0.81527 0.78540 1.20174 1.21188 1.19141 1.20911 0.92709 0.94263 1.25819 0.88212 0.89379 0.88863 0.84046 0.81339 0.75753 0.91444 0.91428 0.96056 0.96465 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.85 36.00 0.35 -0.52 16 2 C 0.16 2.08 7.45 -80.24 -0.60 1.48 16 3 N -0.31 -4.59 12.82 34.83 0.45 -4.14 16 4 O -0.10 -1.48 12.05 8.87 0.11 -1.37 16 5 C 0.17 2.39 7.56 -38.27 -0.29 2.10 16 6 C -0.26 -3.10 10.08 -39.74 -0.40 -3.50 16 7 C 0.21 2.51 11.08 -17.92 -0.20 2.31 16 8 N -0.56 -8.70 9.57 -12.53 -0.12 -8.82 16 9 C 0.49 7.69 7.52 -155.09 -1.17 6.52 16 10 N -0.70 -11.03 5.69 -60.23 -0.34 -11.37 16 11 C 0.13 2.53 5.64 -4.04 -0.02 2.51 16 12 C -0.02 -0.54 4.16 -27.88 -0.12 -0.65 16 13 C -0.52 -14.05 9.66 -34.44 -0.33 -14.38 16 14 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -26.58 13.96 55.43 0.77 -25.81 16 17 Si 0.88 20.37 27.47 -169.99 -4.67 15.70 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -5.78 6.54 56.52 0.37 -5.42 16 21 C -0.33 -4.81 6.28 -105.05 -0.66 -5.47 16 22 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.09 0.78 5.99 -51.93 -0.31 0.47 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 26 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 27 H 0.40 5.51 5.46 -40.82 -0.22 5.29 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 31 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 278.25 15.07 4.19 4.19 Total: -1.00 -31.40 278.25 -6.56 -37.96 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -3.42 Total: 1.38 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -3.53 Total: -7.73 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.76 Total: -50.13 kcal Atomic # 8 Polarization: -1.48 SS G_CDS: 0.11 Total: -1.37 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.40 -6.56 -37.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260457270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.345 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds