Wall clock time and date at job start Mon Mar 30 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29914 * 126.29710 * 2 1 4 4 O 1.41434 * 109.69029 * 180.02562 * 3 2 1 5 5 C 1.34379 * 109.30373 * 359.97438 * 4 3 2 6 6 C 1.39334 * 134.56534 * 180.02562 * 5 4 3 7 7 C 1.36678 * 119.19048 * 179.97438 * 6 5 4 8 8 N 1.32283 * 121.71330 * 359.97438 * 7 6 5 9 9 C 1.32362 * 122.08298 * 0.02562 * 8 7 6 10 10 N 1.38496 * 120.08500 * 179.97438 * 9 8 7 11 11 C 1.46504 * 119.99883 * 0.02562 * 10 9 8 12 12 C 1.52997 * 109.47281 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47158 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00107 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99986 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99858 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99844 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47254 * 89.99959 * 17 15 13 19 19 H 1.48499 * 109.46890 * 210.00333 * 17 15 13 20 20 H 1.48503 * 109.47163 * 329.99737 * 17 15 13 21 21 C 1.40329 * 119.83246 * 359.97438 * 9 8 7 22 22 H 1.09000 * 109.47162 * 89.98049 * 1 2 3 23 23 H 1.08994 * 109.47505 * 209.97784 * 1 2 3 24 24 H 1.09003 * 109.47744 * 329.98061 * 1 2 3 25 25 H 1.07996 * 120.40543 * 359.95440 * 6 5 4 26 26 H 1.08006 * 119.14645 * 179.97438 * 7 6 5 27 27 H 0.96997 * 120.00579 * 180.02562 * 10 9 8 28 28 H 1.09004 * 109.47001 * 299.99999 * 11 10 9 29 29 H 1.09001 * 109.47068 * 59.99876 * 11 10 9 30 30 H 1.09004 * 109.46951 * 299.99845 * 12 11 10 31 31 H 1.08993 * 109.47474 * 59.99563 * 12 11 10 32 32 H 0.97004 * 119.99544 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0471 0.0000 4 8 3.6314 0.6428 -0.0006 5 6 3.6946 -0.6995 -0.0004 6 6 4.7322 -1.6294 -0.0003 7 6 4.4322 -2.9629 0.0004 8 7 3.1817 -3.3943 0.0016 9 6 2.1514 -2.5635 0.0015 10 7 0.8587 -3.0605 0.0022 11 6 0.6304 -4.5077 0.0035 12 6 -0.8740 -4.7867 0.0034 13 6 -1.1088 -6.2753 0.0054 14 1 -0.2691 -6.9544 0.0062 15 6 -2.3957 -6.7702 0.0062 16 7 -2.6006 -8.0692 0.0074 17 14 -3.8481 -5.5955 0.0055 18 1 -4.2333 -5.2854 -1.3947 19 1 -4.9952 -6.2263 0.7065 20 1 -3.4703 -4.3408 0.7044 21 6 2.3721 -1.1776 0.0008 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3634 -0.8901 0.5134 24 1 -0.3635 0.8898 0.5141 25 1 5.7609 -1.3006 -0.0011 26 1 5.2371 -3.6831 0.0001 27 1 0.1045 -2.4506 0.0018 28 1 1.0811 -4.9474 -0.8862 29 1 1.0815 -4.9459 0.8938 30 1 -1.3251 -4.3469 0.8929 31 1 -1.3247 -4.3485 -0.8870 32 1 -3.5060 -8.4174 0.0076 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260457270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:46 Heat of formation + Delta-G solvation = 48.508089 kcal Electronic energy + Delta-G solvation = -17099.204989 eV Core-core repulsion = 14254.369583 eV Total energy + Delta-G solvation = -2844.835405 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.03758 -40.15067 -37.56651 -35.75686 -34.87153 -32.65342 -32.31644 -30.26137 -29.68784 -26.68355 -24.82298 -23.92356 -22.47322 -21.59510 -19.25603 -18.85382 -18.66722 -17.36670 -17.33733 -16.74890 -16.18857 -16.02674 -15.45574 -14.85453 -14.62075 -14.59067 -14.47243 -14.43150 -13.97660 -13.34139 -13.11181 -13.06124 -12.49712 -12.32961 -12.01874 -11.91493 -11.75245 -11.48250 -10.98832 -10.75171 -10.65667 -10.56010 -8.84070 -8.27966 -6.34547 -0.39589 0.27593 0.92409 1.36107 1.40171 1.42304 1.52898 2.06372 2.38005 2.72398 2.98203 3.04144 3.07540 3.52536 3.62205 3.98424 4.21799 4.31384 4.44258 4.49462 4.50575 4.52915 4.71823 4.79112 4.91727 5.05159 5.17262 5.38081 5.43174 5.58125 5.94291 6.07191 6.22100 6.31746 6.73544 7.14176 7.30016 8.88519 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032040 B = 0.005330 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.694348 B = 5252.412866 C = 6100.359552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.163 3.837 3 N -0.329 5.329 4 O -0.114 6.114 5 C 0.146 3.854 6 C -0.246 4.246 7 C 0.204 3.796 8 N -0.587 5.587 9 C 0.478 3.522 10 N -0.698 5.698 11 C 0.156 3.844 12 C -0.018 4.018 13 C -0.533 4.533 14 H 0.034 0.966 15 C 0.006 3.994 16 N -0.950 5.950 17 Si 0.952 3.048 18 H -0.266 1.266 19 H -0.289 1.289 20 H -0.236 1.236 21 C -0.336 4.336 22 H 0.119 0.881 23 H 0.094 0.906 24 H 0.111 0.889 25 H 0.174 0.826 26 H 0.207 0.793 27 H 0.415 0.585 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.769 16.500 -0.076 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.016 4.016 3 N -0.080 5.080 4 O -0.116 6.116 5 C 0.084 3.916 6 C -0.271 4.271 7 C 0.049 3.951 8 N -0.310 5.310 9 C 0.234 3.766 10 N -0.329 5.329 11 C 0.033 3.967 12 C -0.056 4.056 13 C -0.572 4.572 14 H 0.052 0.948 15 C -0.191 4.191 16 N -0.590 5.590 17 Si 0.775 3.225 18 H -0.191 1.191 19 H -0.215 1.215 20 H -0.159 1.159 21 C -0.347 4.347 22 H 0.137 0.863 23 H 0.113 0.887 24 H 0.129 0.871 25 H 0.191 0.809 26 H 0.224 0.776 27 H 0.255 0.745 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.625 16.645 -0.070 18.748 hybrid contribution -0.705 0.093 -0.009 0.711 sum 7.920 16.739 -0.078 18.518 Atomic orbital electron populations 1.20821 0.82055 1.06058 1.06458 1.24895 0.99327 0.88406 0.88991 1.79943 0.84468 1.18354 1.25236 1.89007 1.24033 1.17566 1.81036 1.20669 0.95290 0.84894 0.90718 1.20874 0.99230 0.90828 1.16131 1.22825 0.92531 0.93833 0.85876 1.67544 0.99940 1.37946 1.25523 1.18062 0.87195 0.85548 0.85830 1.45075 1.03404 1.08534 1.75905 1.21093 0.96908 0.77967 1.00781 1.19698 0.92670 0.95365 0.97856 1.21208 0.93032 0.91754 1.51195 0.94773 1.26018 1.02448 0.96815 0.93850 1.70066 1.22493 1.14343 1.52112 0.85633 0.77649 0.79937 0.79272 1.19091 1.21499 1.15900 1.21064 0.93474 0.94178 1.26021 0.86282 0.88736 0.87063 0.80855 0.77617 0.74505 0.92919 0.92938 0.94770 0.94875 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 9.85 71.23 0.70 -0.81 16 2 C 0.16 4.05 7.45 44.89 0.33 4.39 16 3 N -0.33 -9.38 12.82 -43.71 -0.56 -9.94 16 4 O -0.11 -3.39 12.05 34.09 0.41 -2.98 16 5 C 0.15 4.01 7.56 23.12 0.17 4.19 16 6 C -0.25 -5.26 10.08 22.17 0.22 -5.03 16 7 C 0.20 4.49 11.08 84.26 0.93 5.42 16 8 N -0.59 -17.60 9.57 -193.55 -1.85 -19.45 16 9 C 0.48 14.42 7.52 133.54 1.00 15.43 16 10 N -0.70 -21.01 5.69 -344.48 -1.96 -22.97 16 11 C 0.16 5.81 5.64 86.38 0.49 6.30 16 12 C -0.02 -0.76 4.16 29.85 0.12 -0.64 16 13 C -0.53 -29.11 9.66 25.60 0.25 -28.86 16 14 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 15 C 0.01 0.33 5.47 84.66 0.46 0.79 16 16 N -0.95 -57.79 13.96 21.45 0.30 -57.49 16 17 Si 0.95 40.92 27.47 68.60 1.88 42.80 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.24 -8.91 6.54 99.48 0.65 -8.26 16 21 C -0.34 -9.46 6.28 -20.14 -0.13 -9.59 16 22 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.09 1.38 5.99 -2.39 -0.01 1.36 16 24 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 26 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16 27 H 0.41 10.32 5.46 -92.71 -0.51 9.82 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 31 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 32 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -69.73 278.25 3.38 -66.35 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.59 Total: 12.08 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 4.57 Total: -8.42 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -4.07 Total: -109.84 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: 0.41 Total: -2.98 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.88 Total: 42.80 kcal Total: -69.73 3.38 -66.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260457270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.862 kcal (2) G-P(sol) polarization free energy of solvation -69.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds